data_4RF2 # _model_server_result.job_id baHGggSvkdihSfKBFs-x3Q _model_server_result.datetime_utc '2025-03-05 21:22:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":302}' # _entry.id 4RF2 # _exptl.entry_id 4RF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RF2 _cell.length_a 164.13 _cell.length_b 164.13 _cell.length_c 85.42 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 85.42 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 272 A GLN 252 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 D MG MG . A MG 302 1_555 H O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 E MG MG . A MG 303 1_555 H O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 E MG MG . A MG 303 1_555 H O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc5 E MG MG . A MG 303 1_555 H O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RF2 _atom_sites.fract_transf_matrix[1][1] 0.006093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 2 NAP NAP . D 3 MG A 1 302 1 MG MG . E 3 MG A 1 303 2 MG MG . F 2 NAP B 1 301 1 NAP NAP . G 3 MG B 1 302 3 MG MG . H 4 HOH A 1 401 5 HOH HOH . H 4 HOH A 2 402 6 HOH HOH . H 4 HOH A 3 403 8 HOH HOH . H 4 HOH A 4 404 11 HOH HOH . H 4 HOH A 5 405 12 HOH HOH . H 4 HOH A 6 406 15 HOH HOH . H 4 HOH A 7 407 18 HOH HOH . H 4 HOH A 8 408 21 HOH HOH . H 4 HOH A 9 409 22 HOH HOH . H 4 HOH A 10 410 23 HOH HOH . H 4 HOH A 11 411 24 HOH HOH . H 4 HOH A 12 412 26 HOH HOH . H 4 HOH A 13 413 29 HOH HOH . H 4 HOH A 14 414 30 HOH HOH . H 4 HOH A 15 415 33 HOH HOH . H 4 HOH A 16 416 34 HOH HOH . H 4 HOH A 17 417 35 HOH HOH . H 4 HOH A 18 418 36 HOH HOH . H 4 HOH A 19 419 37 HOH HOH . H 4 HOH A 20 420 39 HOH HOH . H 4 HOH A 21 421 42 HOH HOH . H 4 HOH A 22 422 43 HOH HOH . H 4 HOH A 23 423 44 HOH HOH . H 4 HOH A 24 424 45 HOH HOH . H 4 HOH A 25 425 47 HOH HOH . H 4 HOH A 26 426 49 HOH HOH . H 4 HOH A 27 427 51 HOH HOH . H 4 HOH A 28 428 54 HOH HOH . H 4 HOH A 29 429 58 HOH HOH . H 4 HOH A 30 430 59 HOH HOH . H 4 HOH A 31 431 60 HOH HOH . H 4 HOH A 32 432 61 HOH HOH . H 4 HOH A 33 433 62 HOH HOH . H 4 HOH A 34 434 64 HOH HOH . H 4 HOH A 35 435 65 HOH HOH . H 4 HOH A 36 436 67 HOH HOH . H 4 HOH A 37 437 69 HOH HOH . H 4 HOH A 38 438 70 HOH HOH . H 4 HOH A 39 439 71 HOH HOH . H 4 HOH A 40 440 74 HOH HOH . H 4 HOH A 41 441 75 HOH HOH . H 4 HOH A 42 442 77 HOH HOH . H 4 HOH A 43 443 83 HOH HOH . H 4 HOH A 44 444 85 HOH HOH . H 4 HOH A 45 445 88 HOH HOH . H 4 HOH A 46 446 89 HOH HOH . H 4 HOH A 47 447 90 HOH HOH . H 4 HOH A 48 448 92 HOH HOH . H 4 HOH A 49 449 93 HOH HOH . H 4 HOH A 50 450 94 HOH HOH . H 4 HOH A 51 451 95 HOH HOH . H 4 HOH A 52 452 99 HOH HOH . H 4 HOH A 53 453 101 HOH HOH . H 4 HOH A 54 454 104 HOH HOH . H 4 HOH A 55 455 105 HOH HOH . H 4 HOH A 56 456 107 HOH HOH . H 4 HOH A 57 457 112 HOH HOH . H 4 HOH A 58 458 113 HOH HOH . H 4 HOH A 59 459 114 HOH HOH . H 4 HOH A 60 460 116 HOH HOH . H 4 HOH A 61 461 118 HOH HOH . H 4 HOH A 62 462 119 HOH HOH . H 4 HOH A 63 463 123 HOH HOH . H 4 HOH A 64 464 124 HOH HOH . H 4 HOH A 65 465 125 HOH HOH . H 4 HOH A 66 466 126 HOH HOH . H 4 HOH A 67 467 127 HOH HOH . H 4 HOH A 68 468 128 HOH HOH . I 4 HOH B 1 401 1 HOH HOH . I 4 HOH B 2 402 2 HOH HOH . I 4 HOH B 3 403 3 HOH HOH . I 4 HOH B 4 404 4 HOH HOH . I 4 HOH B 5 405 7 HOH HOH . I 4 HOH B 6 406 9 HOH HOH . I 4 HOH B 7 407 10 HOH HOH . I 4 HOH B 8 408 13 HOH HOH . I 4 HOH B 9 409 14 HOH HOH . I 4 HOH B 10 410 16 HOH HOH . I 4 HOH B 11 411 17 HOH HOH . I 4 HOH B 12 412 19 HOH HOH . I 4 HOH B 13 413 20 HOH HOH . I 4 HOH B 14 414 25 HOH HOH . I 4 HOH B 15 415 27 HOH HOH . I 4 HOH B 16 416 28 HOH HOH . I 4 HOH B 17 417 31 HOH HOH . I 4 HOH B 18 418 32 HOH HOH . I 4 HOH B 19 419 38 HOH HOH . I 4 HOH B 20 420 40 HOH HOH . I 4 HOH B 21 421 41 HOH HOH . I 4 HOH B 22 422 46 HOH HOH . I 4 HOH B 23 423 48 HOH HOH . I 4 HOH B 24 424 50 HOH HOH . I 4 HOH B 25 425 52 HOH HOH . I 4 HOH B 26 426 53 HOH HOH . I 4 HOH B 27 427 55 HOH HOH . I 4 HOH B 28 428 56 HOH HOH . I 4 HOH B 29 429 57 HOH HOH . I 4 HOH B 30 430 63 HOH HOH . I 4 HOH B 31 431 66 HOH HOH . I 4 HOH B 32 432 68 HOH HOH . I 4 HOH B 33 433 72 HOH HOH . I 4 HOH B 34 434 73 HOH HOH . I 4 HOH B 35 435 76 HOH HOH . I 4 HOH B 36 436 78 HOH HOH . I 4 HOH B 37 437 79 HOH HOH . I 4 HOH B 38 438 80 HOH HOH . I 4 HOH B 39 439 81 HOH HOH . I 4 HOH B 40 440 82 HOH HOH . I 4 HOH B 41 441 84 HOH HOH . I 4 HOH B 42 442 86 HOH HOH . I 4 HOH B 43 443 87 HOH HOH . I 4 HOH B 44 444 91 HOH HOH . I 4 HOH B 45 445 96 HOH HOH . I 4 HOH B 46 446 97 HOH HOH . I 4 HOH B 47 447 98 HOH HOH . I 4 HOH B 48 448 100 HOH HOH . I 4 HOH B 49 449 102 HOH HOH . I 4 HOH B 50 450 103 HOH HOH . I 4 HOH B 51 451 106 HOH HOH . I 4 HOH B 52 452 108 HOH HOH . I 4 HOH B 53 453 109 HOH HOH . I 4 HOH B 54 454 110 HOH HOH . I 4 HOH B 55 455 111 HOH HOH . I 4 HOH B 56 456 115 HOH HOH . I 4 HOH B 57 457 117 HOH HOH . I 4 HOH B 58 458 120 HOH HOH . I 4 HOH B 59 459 121 HOH HOH . I 4 HOH B 60 460 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 52.145 _atom_site.Cartn_y -52.145 _atom_site.Cartn_z 42.71 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 61.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #