data_4RF5 # _model_server_result.job_id KJm9Fz4BLeHDd8siIK99Rw _model_server_result.datetime_utc '2025-02-20 15:35:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 4RF5 # _exptl.entry_id 4RF5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RF5 _cell.length_a 66.14 _cell.length_b 110.34 _cell.length_c 69.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 66.14 220.68 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 45 A ASP 25 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A O GLN 272 A GLN 252 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 C MG MG . A MG 301 1_555 G O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 C MG MG . A MG 301 1_555 G O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 C MG MG . A MG 301 1_555 G O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc6 C MG MG . A MG 301 1_555 G O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc7 D MG MG . A MG 302 1_555 G O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 D MG MG . A MG 302 1_555 G O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc9 D MG MG . A MG 302 1_555 G O HOH . A HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 D MG MG . A MG 302 1_555 G O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc11 D MG MG . A MG 302 1_555 G O HOH . A HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4RF5 _atom_sites.fract_transf_matrix[1][1] 0.015119 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 1 MG MG . D 2 MG A 1 302 2 MG MG . E 3 GOL A 1 303 1 GOL GOL . F 3 GOL A 1 304 2 GOL GOL . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 2 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 4 HOH HOH . G 4 HOH A 5 405 5 HOH HOH . G 4 HOH A 6 406 6 HOH HOH . G 4 HOH A 7 407 7 HOH HOH . G 4 HOH A 8 408 10 HOH HOH . G 4 HOH A 9 409 11 HOH HOH . G 4 HOH A 10 410 12 HOH HOH . G 4 HOH A 11 411 15 HOH HOH . G 4 HOH A 12 412 16 HOH HOH . G 4 HOH A 13 413 17 HOH HOH . G 4 HOH A 14 414 19 HOH HOH . G 4 HOH A 15 415 20 HOH HOH . G 4 HOH A 16 416 21 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 26 HOH HOH . G 4 HOH A 19 419 28 HOH HOH . G 4 HOH A 20 420 30 HOH HOH . G 4 HOH A 21 421 31 HOH HOH . G 4 HOH A 22 422 32 HOH HOH . G 4 HOH A 23 423 33 HOH HOH . G 4 HOH A 24 424 35 HOH HOH . G 4 HOH A 25 425 38 HOH HOH . G 4 HOH A 26 426 39 HOH HOH . G 4 HOH A 27 427 41 HOH HOH . G 4 HOH A 28 428 43 HOH HOH . G 4 HOH A 29 429 44 HOH HOH . G 4 HOH A 30 430 45 HOH HOH . G 4 HOH A 31 431 47 HOH HOH . G 4 HOH A 32 432 48 HOH HOH . G 4 HOH A 33 433 50 HOH HOH . G 4 HOH A 34 434 51 HOH HOH . G 4 HOH A 35 435 53 HOH HOH . G 4 HOH A 36 436 54 HOH HOH . G 4 HOH A 37 437 56 HOH HOH . G 4 HOH A 38 438 60 HOH HOH . G 4 HOH A 39 439 64 HOH HOH . G 4 HOH A 40 440 65 HOH HOH . G 4 HOH A 41 441 67 HOH HOH . G 4 HOH A 42 442 70 HOH HOH . G 4 HOH A 43 443 71 HOH HOH . G 4 HOH A 44 444 72 HOH HOH . G 4 HOH A 45 445 74 HOH HOH . G 4 HOH A 46 446 75 HOH HOH . G 4 HOH A 47 447 76 HOH HOH . G 4 HOH A 48 448 77 HOH HOH . G 4 HOH A 49 449 78 HOH HOH . G 4 HOH A 50 450 81 HOH HOH . G 4 HOH A 51 451 82 HOH HOH . G 4 HOH A 52 452 83 HOH HOH . G 4 HOH A 53 453 84 HOH HOH . G 4 HOH A 54 454 85 HOH HOH . G 4 HOH A 55 455 86 HOH HOH . G 4 HOH A 56 456 89 HOH HOH . G 4 HOH A 57 457 91 HOH HOH . G 4 HOH A 58 458 92 HOH HOH . G 4 HOH A 59 459 96 HOH HOH . G 4 HOH A 60 460 97 HOH HOH . G 4 HOH A 61 461 99 HOH HOH . G 4 HOH A 62 462 100 HOH HOH . G 4 HOH A 63 463 101 HOH HOH . G 4 HOH A 64 464 105 HOH HOH . G 4 HOH A 65 465 107 HOH HOH . G 4 HOH A 66 466 108 HOH HOH . G 4 HOH A 67 467 109 HOH HOH . G 4 HOH A 68 468 110 HOH HOH . G 4 HOH A 69 469 112 HOH HOH . G 4 HOH A 70 470 113 HOH HOH . G 4 HOH A 71 471 114 HOH HOH . G 4 HOH A 72 472 115 HOH HOH . G 4 HOH A 73 473 116 HOH HOH . G 4 HOH A 74 474 117 HOH HOH . G 4 HOH A 75 475 118 HOH HOH . G 4 HOH A 76 476 119 HOH HOH . G 4 HOH A 77 477 120 HOH HOH . G 4 HOH A 78 478 122 HOH HOH . G 4 HOH A 79 479 123 HOH HOH . G 4 HOH A 80 480 124 HOH HOH . G 4 HOH A 81 481 125 HOH HOH . G 4 HOH A 82 482 127 HOH HOH . G 4 HOH A 83 483 129 HOH HOH . G 4 HOH A 84 484 130 HOH HOH . G 4 HOH A 85 485 131 HOH HOH . G 4 HOH A 86 486 135 HOH HOH . G 4 HOH A 87 487 136 HOH HOH . G 4 HOH A 88 488 137 HOH HOH . G 4 HOH A 89 489 138 HOH HOH . G 4 HOH A 90 490 139 HOH HOH . G 4 HOH A 91 491 140 HOH HOH . G 4 HOH A 92 492 141 HOH HOH . G 4 HOH A 93 493 142 HOH HOH . G 4 HOH A 94 494 143 HOH HOH . G 4 HOH A 95 495 144 HOH HOH . G 4 HOH A 96 496 148 HOH HOH . G 4 HOH A 97 497 149 HOH HOH . G 4 HOH A 98 498 151 HOH HOH . G 4 HOH A 99 499 154 HOH HOH . G 4 HOH A 100 500 156 HOH HOH . G 4 HOH A 101 501 158 HOH HOH . G 4 HOH A 102 502 159 HOH HOH . G 4 HOH A 103 503 160 HOH HOH . G 4 HOH A 104 504 161 HOH HOH . G 4 HOH A 105 505 165 HOH HOH . G 4 HOH A 106 506 166 HOH HOH . G 4 HOH A 107 507 168 HOH HOH . G 4 HOH A 108 508 169 HOH HOH . G 4 HOH A 109 509 171 HOH HOH . G 4 HOH A 110 510 172 HOH HOH . G 4 HOH A 111 511 173 HOH HOH . G 4 HOH A 112 512 178 HOH HOH . G 4 HOH A 113 513 185 HOH HOH . G 4 HOH A 114 514 187 HOH HOH . G 4 HOH A 115 515 188 HOH HOH . G 4 HOH A 116 516 191 HOH HOH . G 4 HOH A 117 517 204 HOH HOH . G 4 HOH A 118 518 205 HOH HOH . G 4 HOH A 119 519 206 HOH HOH . G 4 HOH A 120 520 207 HOH HOH . G 4 HOH A 121 521 212 HOH HOH . G 4 HOH A 122 522 213 HOH HOH . G 4 HOH A 123 523 214 HOH HOH . G 4 HOH A 124 524 215 HOH HOH . G 4 HOH A 125 525 216 HOH HOH . G 4 HOH A 126 526 217 HOH HOH . G 4 HOH A 127 527 220 HOH HOH . G 4 HOH A 128 528 221 HOH HOH . G 4 HOH A 129 529 222 HOH HOH . G 4 HOH A 130 530 223 HOH HOH . G 4 HOH A 131 531 224 HOH HOH . G 4 HOH A 132 532 225 HOH HOH . G 4 HOH A 133 533 227 HOH HOH . G 4 HOH A 134 534 233 HOH HOH . G 4 HOH A 135 535 234 HOH HOH . G 4 HOH A 136 536 235 HOH HOH . G 4 HOH A 137 537 236 HOH HOH . G 4 HOH A 138 538 238 HOH HOH . G 4 HOH A 139 539 239 HOH HOH . G 4 HOH A 140 540 242 HOH HOH . G 4 HOH A 141 541 245 HOH HOH . G 4 HOH A 142 542 246 HOH HOH . G 4 HOH A 143 543 250 HOH HOH . G 4 HOH A 144 544 253 HOH HOH . H 4 HOH B 1 301 8 HOH HOH . H 4 HOH B 2 302 9 HOH HOH . H 4 HOH B 3 303 13 HOH HOH . H 4 HOH B 4 304 14 HOH HOH . H 4 HOH B 5 305 18 HOH HOH . H 4 HOH B 6 306 23 HOH HOH . H 4 HOH B 7 307 24 HOH HOH . H 4 HOH B 8 308 25 HOH HOH . H 4 HOH B 9 309 27 HOH HOH . H 4 HOH B 10 310 29 HOH HOH . H 4 HOH B 11 311 34 HOH HOH . H 4 HOH B 12 312 36 HOH HOH . H 4 HOH B 13 313 37 HOH HOH . H 4 HOH B 14 314 40 HOH HOH . H 4 HOH B 15 315 42 HOH HOH . H 4 HOH B 16 316 46 HOH HOH . H 4 HOH B 17 317 55 HOH HOH . H 4 HOH B 18 318 57 HOH HOH . H 4 HOH B 19 319 58 HOH HOH . H 4 HOH B 20 320 59 HOH HOH . H 4 HOH B 21 321 61 HOH HOH . H 4 HOH B 22 322 62 HOH HOH . H 4 HOH B 23 323 63 HOH HOH . H 4 HOH B 24 324 66 HOH HOH . H 4 HOH B 25 325 68 HOH HOH . H 4 HOH B 26 326 69 HOH HOH . H 4 HOH B 27 327 79 HOH HOH . H 4 HOH B 28 328 80 HOH HOH . H 4 HOH B 29 329 87 HOH HOH . H 4 HOH B 30 330 88 HOH HOH . H 4 HOH B 31 331 93 HOH HOH . H 4 HOH B 32 332 95 HOH HOH . H 4 HOH B 33 333 98 HOH HOH . H 4 HOH B 34 334 102 HOH HOH . H 4 HOH B 35 335 103 HOH HOH . H 4 HOH B 36 336 106 HOH HOH . H 4 HOH B 37 337 111 HOH HOH . H 4 HOH B 38 338 121 HOH HOH . H 4 HOH B 39 339 126 HOH HOH . H 4 HOH B 40 340 128 HOH HOH . H 4 HOH B 41 341 132 HOH HOH . H 4 HOH B 42 342 133 HOH HOH . H 4 HOH B 43 343 134 HOH HOH . H 4 HOH B 44 344 145 HOH HOH . H 4 HOH B 45 345 147 HOH HOH . H 4 HOH B 46 346 150 HOH HOH . H 4 HOH B 47 347 152 HOH HOH . H 4 HOH B 48 348 153 HOH HOH . H 4 HOH B 49 349 155 HOH HOH . H 4 HOH B 50 350 157 HOH HOH . H 4 HOH B 51 351 162 HOH HOH . H 4 HOH B 52 352 163 HOH HOH . H 4 HOH B 53 353 164 HOH HOH . H 4 HOH B 54 354 167 HOH HOH . H 4 HOH B 55 355 170 HOH HOH . H 4 HOH B 56 356 174 HOH HOH . H 4 HOH B 57 357 175 HOH HOH . H 4 HOH B 58 358 176 HOH HOH . H 4 HOH B 59 359 177 HOH HOH . H 4 HOH B 60 360 179 HOH HOH . H 4 HOH B 61 361 180 HOH HOH . H 4 HOH B 62 362 181 HOH HOH . H 4 HOH B 63 363 182 HOH HOH . H 4 HOH B 64 364 183 HOH HOH . H 4 HOH B 65 365 184 HOH HOH . H 4 HOH B 66 366 186 HOH HOH . H 4 HOH B 67 367 189 HOH HOH . H 4 HOH B 68 368 190 HOH HOH . H 4 HOH B 69 369 192 HOH HOH . H 4 HOH B 70 370 193 HOH HOH . H 4 HOH B 71 371 194 HOH HOH . H 4 HOH B 72 372 195 HOH HOH . H 4 HOH B 73 373 196 HOH HOH . H 4 HOH B 74 374 197 HOH HOH . H 4 HOH B 75 375 198 HOH HOH . H 4 HOH B 76 376 199 HOH HOH . H 4 HOH B 77 377 200 HOH HOH . H 4 HOH B 78 378 202 HOH HOH . H 4 HOH B 79 379 203 HOH HOH . H 4 HOH B 80 380 208 HOH HOH . H 4 HOH B 81 381 211 HOH HOH . H 4 HOH B 82 382 218 HOH HOH . H 4 HOH B 83 383 226 HOH HOH . H 4 HOH B 84 384 228 HOH HOH . H 4 HOH B 85 385 229 HOH HOH . H 4 HOH B 86 386 230 HOH HOH . H 4 HOH B 87 387 231 HOH HOH . H 4 HOH B 88 388 232 HOH HOH . H 4 HOH B 89 389 237 HOH HOH . H 4 HOH B 90 390 240 HOH HOH . H 4 HOH B 91 391 241 HOH HOH . H 4 HOH B 92 392 243 HOH HOH . H 4 HOH B 93 393 244 HOH HOH . H 4 HOH B 94 394 247 HOH HOH . H 4 HOH B 95 395 249 HOH HOH . H 4 HOH B 96 396 251 HOH HOH . H 4 HOH B 97 397 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 41.809 131.501 40.526 1 30.51 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . E 3 42.002 132.5 41.502 1 27.14 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . E 3 42.585 131.787 39.243 1 32.11 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . E 3 43.625 132.717 39.472 1 28.76 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . E 3 43.087 130.468 38.645 1 29.5 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . E 3 44.358 130.596 38.039 1 31.95 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #