data_4RFM # _model_server_result.job_id xAxcJlmStesXNvCHOXe2cg _model_server_result.datetime_utc '2024-11-25 16:11:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4RFM # _exptl.entry_id 4RFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.575 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4aS,5aR)-N-{1-[(R)-[(2R)-1,1-dioxidotetrahydro-2H-thiopyran-2-yl](phenyl)methyl]-1H-pyrazol-4-yl}-5,5-difluoro-5a-methyl-1,4,4a,5,5a,6-hexahydrocyclopropa[f]indazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.39 _cell.angle_gamma 90 _cell.entry_id 4RFM _cell.length_a 40.006 _cell.length_b 69.561 _cell.length_c 47.347 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H27 F2 N5 O3 S' _chem_comp.formula_weight 515.575 _chem_comp.id 3P6 _chem_comp.mon_nstd_flag . _chem_comp.name (4aS,5aR)-N-{1-[(R)-[(2R)-1,1-dioxidotetrahydro-2H-thiopyran-2-yl](phenyl)methyl]-1H-pyrazol-4-yl}-5,5-difluoro-5a-methyl-1,4,4a,5,5a,6-hexahydrocyclopropa[f]indazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F35 C34 3P6 sing 1 n n F36 C34 3P6 sing 2 n n C29 C28 3P6 doub 3 n y C29 C30 3P6 sing 4 n y C34 C33 3P6 sing 5 n n C34 C2 3P6 sing 6 n n C28 C27 3P6 sing 7 n y C30 C25 3P6 doub 8 n y C33 C32 3P6 sing 9 n n C33 C2 3P6 sing 10 n n C32 C31 3P6 sing 11 n n C2 C3 3P6 sing 12 n n C2 C1 3P6 sing 13 n n O9 C8 3P6 doub 14 n n C27 C26 3P6 doub 15 n y C3 C4 3P6 sing 16 n n C31 C4 3P6 doub 17 n y C31 C7 3P6 sing 18 n y C4 N5 3P6 sing 19 n y C8 C7 3P6 sing 20 n n C8 N10 3P6 sing 21 n n C12 N13 3P6 doub 22 n y C12 C11 3P6 sing 23 n y C7 N6 3P6 doub 24 n y N13 N14 3P6 sing 25 n y C25 C26 3P6 sing 26 n y C25 C16 3P6 sing 27 n n N5 N6 3P6 sing 28 n y C11 N10 3P6 sing 29 n n C11 C15 3P6 doub 30 n y N14 C15 3P6 sing 31 n y N14 C16 3P6 sing 32 n n C16 C17 3P6 sing 33 n n C17 C18 3P6 sing 34 n n C17 S22 3P6 sing 35 n n C19 C18 3P6 sing 36 n n C19 C20 3P6 sing 37 n n O24 S22 3P6 doub 38 n n S22 C21 3P6 sing 39 n n S22 O23 3P6 doub 40 n n C20 C21 3P6 sing 41 n n C1 H1 3P6 sing 42 n n C1 H2 3P6 sing 43 n n C1 H3 3P6 sing 44 n n C3 H4 3P6 sing 45 n n C3 H5 3P6 sing 46 n n N5 H6 3P6 sing 47 n n N10 H7 3P6 sing 48 n n C12 H8 3P6 sing 49 n n C15 H9 3P6 sing 50 n n C16 H10 3P6 sing 51 n n C17 H11 3P6 sing 52 n n C18 H12 3P6 sing 53 n n C18 H13 3P6 sing 54 n n C19 H14 3P6 sing 55 n n C19 H15 3P6 sing 56 n n C20 H16 3P6 sing 57 n n C20 H17 3P6 sing 58 n n C21 H18 3P6 sing 59 n n C21 H19 3P6 sing 60 n n C26 H20 3P6 sing 61 n n C27 H21 3P6 sing 62 n n C28 H22 3P6 sing 63 n n C29 H23 3P6 sing 64 n n C30 H24 3P6 sing 65 n n C32 H25 3P6 sing 66 n n C32 H26 3P6 sing 67 n n C33 H27 3P6 sing 68 n n # _atom_sites.entry_id 4RFM _atom_sites.fract_transf_matrix[1][1] 0.024996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3P6 A 1 701 1 3P6 3P6 . C 3 HOH A 1 801 1 HOH HOH . C 3 HOH A 2 802 2 HOH HOH . C 3 HOH A 3 803 3 HOH HOH . C 3 HOH A 4 804 4 HOH HOH . C 3 HOH A 5 805 5 HOH HOH . C 3 HOH A 6 806 6 HOH HOH . C 3 HOH A 7 807 7 HOH HOH . C 3 HOH A 8 808 8 HOH HOH . C 3 HOH A 9 809 9 HOH HOH . C 3 HOH A 10 810 10 HOH HOH . C 3 HOH A 11 811 11 HOH HOH . C 3 HOH A 12 812 12 HOH HOH . C 3 HOH A 13 813 13 HOH HOH . C 3 HOH A 14 814 14 HOH HOH . C 3 HOH A 15 815 15 HOH HOH . C 3 HOH A 16 816 16 HOH HOH . C 3 HOH A 17 817 17 HOH HOH . C 3 HOH A 18 818 18 HOH HOH . C 3 HOH A 19 819 19 HOH HOH . C 3 HOH A 20 820 20 HOH HOH . C 3 HOH A 21 821 21 HOH HOH . C 3 HOH A 22 822 22 HOH HOH . C 3 HOH A 23 823 23 HOH HOH . C 3 HOH A 24 824 24 HOH HOH . C 3 HOH A 25 825 25 HOH HOH . C 3 HOH A 26 826 26 HOH HOH . C 3 HOH A 27 827 28 HOH HOH . C 3 HOH A 28 828 29 HOH HOH . C 3 HOH A 29 829 30 HOH HOH . C 3 HOH A 30 830 31 HOH HOH . C 3 HOH A 31 831 32 HOH HOH . C 3 HOH A 32 832 33 HOH HOH . C 3 HOH A 33 833 34 HOH HOH . C 3 HOH A 34 834 35 HOH HOH . C 3 HOH A 35 835 36 HOH HOH . C 3 HOH A 36 836 37 HOH HOH . C 3 HOH A 37 837 38 HOH HOH . C 3 HOH A 38 838 40 HOH HOH . C 3 HOH A 39 839 41 HOH HOH . C 3 HOH A 40 840 42 HOH HOH . C 3 HOH A 41 841 43 HOH HOH . C 3 HOH A 42 842 45 HOH HOH . C 3 HOH A 43 843 46 HOH HOH . C 3 HOH A 44 844 47 HOH HOH . C 3 HOH A 45 845 49 HOH HOH . C 3 HOH A 46 846 50 HOH HOH . C 3 HOH A 47 847 51 HOH HOH . C 3 HOH A 48 848 52 HOH HOH . C 3 HOH A 49 849 53 HOH HOH . C 3 HOH A 50 850 54 HOH HOH . C 3 HOH A 51 851 55 HOH HOH . C 3 HOH A 52 852 56 HOH HOH . C 3 HOH A 53 853 58 HOH HOH . C 3 HOH A 54 854 59 HOH HOH . C 3 HOH A 55 855 60 HOH HOH . C 3 HOH A 56 856 61 HOH HOH . C 3 HOH A 57 857 62 HOH HOH . C 3 HOH A 58 858 63 HOH HOH . C 3 HOH A 59 859 64 HOH HOH . C 3 HOH A 60 860 65 HOH HOH . C 3 HOH A 61 861 66 HOH HOH . C 3 HOH A 62 862 67 HOH HOH . C 3 HOH A 63 863 68 HOH HOH . C 3 HOH A 64 864 69 HOH HOH . C 3 HOH A 65 865 70 HOH HOH . C 3 HOH A 66 866 72 HOH HOH . C 3 HOH A 67 867 73 HOH HOH . C 3 HOH A 68 868 74 HOH HOH . C 3 HOH A 69 869 75 HOH HOH . C 3 HOH A 70 870 77 HOH HOH . C 3 HOH A 71 871 78 HOH HOH . C 3 HOH A 72 872 79 HOH HOH . C 3 HOH A 73 873 80 HOH HOH . C 3 HOH A 74 874 81 HOH HOH . C 3 HOH A 75 875 82 HOH HOH . C 3 HOH A 76 876 83 HOH HOH . C 3 HOH A 77 877 84 HOH HOH . C 3 HOH A 78 878 85 HOH HOH . C 3 HOH A 79 879 86 HOH HOH . C 3 HOH A 80 880 87 HOH HOH . C 3 HOH A 81 881 88 HOH HOH . C 3 HOH A 82 882 89 HOH HOH . C 3 HOH A 83 883 91 HOH HOH . C 3 HOH A 84 884 92 HOH HOH . C 3 HOH A 85 885 94 HOH HOH . C 3 HOH A 86 886 95 HOH HOH . C 3 HOH A 87 887 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3P6 . . . B 2 13.351 3.113 5.766 1 27.89 ? C1 3P6 701 A 1 HETATM 2 C C2 3P6 . . . B 2 14.707 2.965 5.165 1 27.82 ? C2 3P6 701 A 1 HETATM 3 C C3 3P6 . . . B 2 15.734 4.008 5.582 1 28.22 ? C3 3P6 701 A 1 HETATM 4 C C4 3P6 . . . B 2 17.08 3.429 5.816 1 27.69 ? C4 3P6 701 A 1 HETATM 5 N N5 3P6 . . . B 2 18.165 4.084 6.312 1 27.94 ? N5 3P6 701 A 1 HETATM 6 N N6 3P6 . . . B 2 19.243 3.262 6.391 1 29.86 ? N6 3P6 701 A 1 HETATM 7 C C7 3P6 . . . B 2 18.852 2.056 5.937 1 27.64 ? C7 3P6 701 A 1 HETATM 8 C C8 3P6 . . . B 2 19.76 0.907 5.869 1 28.84 ? C8 3P6 701 A 1 HETATM 9 O O9 3P6 . . . B 2 19.523 -0.134 5.274 1 27.22 ? O9 3P6 701 A 1 HETATM 10 N N10 3P6 . . . B 2 20.935 1.078 6.562 1 29.88 ? N10 3P6 701 A 1 HETATM 11 C C11 3P6 . . . B 2 21.984 0.172 6.491 1 29.02 ? C11 3P6 701 A 1 HETATM 12 C C12 3P6 . . . B 2 22.087 -1.12 5.907 1 31.3 ? C12 3P6 701 A 1 HETATM 13 N N13 3P6 . . . B 2 23.29 -1.675 6.042 1 29.75 ? N13 3P6 701 A 1 HETATM 14 N N14 3P6 . . . B 2 23.946 -0.728 6.738 1 30.35 ? N14 3P6 701 A 1 HETATM 15 C C15 3P6 . . . B 2 23.216 0.391 7.024 1 27.93 ? C15 3P6 701 A 1 HETATM 16 C C16 3P6 . . . B 2 25.345 -0.884 7.103 1 33 ? C16 3P6 701 A 1 HETATM 17 C C17 3P6 . . . B 2 25.793 -2.326 7.26 1 32.37 ? C17 3P6 701 A 1 HETATM 18 C C18 3P6 . . . B 2 27.3 -2.398 7.519 1 32.82 ? C18 3P6 701 A 1 HETATM 19 C C19 3P6 . . . B 2 27.781 -3.86 7.501 1 31.44 ? C19 3P6 701 A 1 HETATM 20 C C20 3P6 . . . B 2 27.343 -4.609 8.711 1 29.93 ? C20 3P6 701 A 1 HETATM 21 C C21 3P6 . . . B 2 25.818 -4.663 8.767 1 35.83 ? C21 3P6 701 A 1 HETATM 22 S S22 3P6 . . . B 2 24.981 -3.061 8.679 1 33.1 ? S22 3P6 701 A 1 HETATM 23 O O23 3P6 . . . B 2 25.343 -2.302 9.866 1 28.31 ? O23 3P6 701 A 1 HETATM 24 O O24 3P6 . . . B 2 23.596 -3.335 8.34 1 31.45 ? O24 3P6 701 A 1 HETATM 25 C C25 3P6 . . . B 2 26.177 -0.169 6.067 1 36.72 ? C25 3P6 701 A 1 HETATM 26 C C26 3P6 . . . B 2 27.082 0.804 6.452 1 37.32 ? C26 3P6 701 A 1 HETATM 27 C C27 3P6 . . . B 2 27.857 1.449 5.5 1 38.4 ? C27 3P6 701 A 1 HETATM 28 C C28 3P6 . . . B 2 27.721 1.15 4.158 1 40.72 ? C28 3P6 701 A 1 HETATM 29 C C29 3P6 . . . B 2 26.815 0.179 3.765 1 41.15 ? C29 3P6 701 A 1 HETATM 30 C C30 3P6 . . . B 2 26.048 -0.475 4.724 1 38.97 ? C30 3P6 701 A 1 HETATM 31 C C31 3P6 . . . B 2 17.485 2.143 5.589 1 28 ? C31 3P6 701 A 1 HETATM 32 C C32 3P6 . . . B 2 16.588 1.114 5.051 1 30.16 ? C32 3P6 701 A 1 HETATM 33 C C33 3P6 . . . B 2 15.154 1.532 4.947 1 27.15 ? C33 3P6 701 A 1 HETATM 34 C C34 3P6 . . . B 2 14.792 2.405 3.794 1 29.19 ? C34 3P6 701 A 1 HETATM 35 F F35 3P6 . . . B 2 15.748 3.001 2.969 1 27.45 ? F35 3P6 701 A 1 HETATM 36 F F36 3P6 . . . B 2 13.624 2.203 3.085 1 30.91 ? F36 3P6 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #