data_4RFP # _model_server_result.job_id ySrpqSfWqmcEaKXIT9tXnA _model_server_result.datetime_utc '2024-11-09 02:04:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 4RFP # _exptl.entry_id 4RFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RFP _cell.length_a 72.177 _cell.length_b 85.712 _cell.length_c 38.888 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 A SG CYS 57 A CYS 57 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf7 A SG CYS 75 A CYS 75 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf8 B SG CYS 26 B CYS 26 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf9 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf10 B SG CYS 43 B CYS 43 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 B SG CYS 49 B CYS 49 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf12 B SG CYS 50 B CYS 50 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 B SG CYS 57 B CYS 57 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 75 B CYS 75 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 4RFP _atom_sites.fract_transf_matrix[1][1] 0.013855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 201 1 PEG PEG . D 2 PEG B 1 201 1 PEG PEG . E 2 PEG B 1 202 1 PEG PEG . F 2 PEG B 1 203 1 PEG PEG . G 3 HOH A 1 301 3 HOH HOH . G 3 HOH A 2 302 4 HOH HOH . G 3 HOH A 3 303 8 HOH HOH . G 3 HOH A 4 304 9 HOH HOH . G 3 HOH A 5 305 10 HOH HOH . G 3 HOH A 6 306 11 HOH HOH . G 3 HOH A 7 307 13 HOH HOH . G 3 HOH A 8 308 20 HOH HOH . G 3 HOH A 9 309 21 HOH HOH . G 3 HOH A 10 310 24 HOH HOH . G 3 HOH A 11 311 25 HOH HOH . G 3 HOH A 12 312 26 HOH HOH . G 3 HOH A 13 313 27 HOH HOH . G 3 HOH A 14 314 29 HOH HOH . G 3 HOH A 15 315 30 HOH HOH . G 3 HOH A 16 316 32 HOH HOH . G 3 HOH A 17 317 33 HOH HOH . G 3 HOH A 18 318 35 HOH HOH . G 3 HOH A 19 319 36 HOH HOH . G 3 HOH A 20 320 40 HOH HOH . G 3 HOH A 21 321 41 HOH HOH . G 3 HOH A 22 322 46 HOH HOH . G 3 HOH A 23 323 48 HOH HOH . G 3 HOH A 24 324 52 HOH HOH . G 3 HOH A 25 325 53 HOH HOH . G 3 HOH A 26 326 54 HOH HOH . G 3 HOH A 27 327 55 HOH HOH . G 3 HOH A 28 328 68 HOH HOH . G 3 HOH A 29 329 70 HOH HOH . G 3 HOH A 30 330 72 HOH HOH . G 3 HOH A 31 331 73 HOH HOH . G 3 HOH A 32 332 74 HOH HOH . G 3 HOH A 33 333 75 HOH HOH . G 3 HOH A 34 334 77 HOH HOH . G 3 HOH A 35 335 78 HOH HOH . G 3 HOH A 36 336 84 HOH HOH . G 3 HOH A 37 337 85 HOH HOH . G 3 HOH A 38 338 86 HOH HOH . G 3 HOH A 39 339 87 HOH HOH . G 3 HOH A 40 340 88 HOH HOH . G 3 HOH A 41 341 89 HOH HOH . G 3 HOH A 42 342 90 HOH HOH . G 3 HOH A 43 343 91 HOH HOH . G 3 HOH A 44 344 98 HOH HOH . G 3 HOH A 45 345 105 HOH HOH . G 3 HOH A 46 346 106 HOH HOH . G 3 HOH A 47 347 107 HOH HOH . G 3 HOH A 48 348 108 HOH HOH . G 3 HOH A 49 349 110 HOH HOH . G 3 HOH A 50 350 114 HOH HOH . G 3 HOH A 51 351 115 HOH HOH . G 3 HOH A 52 352 119 HOH HOH . G 3 HOH A 53 353 120 HOH HOH . G 3 HOH A 54 354 121 HOH HOH . G 3 HOH A 55 355 122 HOH HOH . G 3 HOH A 56 356 123 HOH HOH . G 3 HOH A 57 357 126 HOH HOH . G 3 HOH A 58 358 127 HOH HOH . G 3 HOH A 59 359 129 HOH HOH . G 3 HOH A 60 360 130 HOH HOH . G 3 HOH A 61 361 131 HOH HOH . G 3 HOH A 62 362 132 HOH HOH . G 3 HOH A 63 363 134 HOH HOH . G 3 HOH A 64 364 136 HOH HOH . G 3 HOH A 65 365 137 HOH HOH . G 3 HOH A 66 366 138 HOH HOH . G 3 HOH A 67 367 139 HOH HOH . G 3 HOH A 68 368 143 HOH HOH . G 3 HOH A 69 369 144 HOH HOH . G 3 HOH A 70 370 149 HOH HOH . G 3 HOH A 71 371 151 HOH HOH . G 3 HOH A 72 372 152 HOH HOH . G 3 HOH A 73 373 153 HOH HOH . G 3 HOH A 74 374 155 HOH HOH . G 3 HOH A 75 375 157 HOH HOH . G 3 HOH A 76 376 158 HOH HOH . G 3 HOH A 77 377 159 HOH HOH . G 3 HOH A 78 378 163 HOH HOH . G 3 HOH A 79 379 165 HOH HOH . G 3 HOH A 80 380 168 HOH HOH . G 3 HOH A 81 381 169 HOH HOH . G 3 HOH A 82 382 174 HOH HOH . G 3 HOH A 83 383 175 HOH HOH . G 3 HOH A 84 384 176 HOH HOH . G 3 HOH A 85 385 177 HOH HOH . G 3 HOH A 86 386 178 HOH HOH . G 3 HOH A 87 387 180 HOH HOH . G 3 HOH A 88 388 182 HOH HOH . G 3 HOH A 89 389 183 HOH HOH . G 3 HOH A 90 390 185 HOH HOH . G 3 HOH A 91 391 188 HOH HOH . H 3 HOH B 1 301 1 HOH HOH . H 3 HOH B 2 302 2 HOH HOH . H 3 HOH B 3 303 5 HOH HOH . H 3 HOH B 4 304 6 HOH HOH . H 3 HOH B 5 305 7 HOH HOH . H 3 HOH B 6 306 12 HOH HOH . H 3 HOH B 7 307 14 HOH HOH . H 3 HOH B 8 308 15 HOH HOH . H 3 HOH B 9 309 16 HOH HOH . H 3 HOH B 10 310 17 HOH HOH . H 3 HOH B 11 311 18 HOH HOH . H 3 HOH B 12 312 19 HOH HOH . H 3 HOH B 13 313 22 HOH HOH . H 3 HOH B 14 314 23 HOH HOH . H 3 HOH B 15 315 28 HOH HOH . H 3 HOH B 16 316 31 HOH HOH . H 3 HOH B 17 317 34 HOH HOH . H 3 HOH B 18 318 37 HOH HOH . H 3 HOH B 19 319 38 HOH HOH . H 3 HOH B 20 320 39 HOH HOH . H 3 HOH B 21 321 42 HOH HOH . H 3 HOH B 22 322 43 HOH HOH . H 3 HOH B 23 323 44 HOH HOH . H 3 HOH B 24 324 45 HOH HOH . H 3 HOH B 25 325 47 HOH HOH . H 3 HOH B 26 326 49 HOH HOH . H 3 HOH B 27 327 50 HOH HOH . H 3 HOH B 28 328 51 HOH HOH . H 3 HOH B 29 329 56 HOH HOH . H 3 HOH B 30 330 57 HOH HOH . H 3 HOH B 31 331 58 HOH HOH . H 3 HOH B 32 332 59 HOH HOH . H 3 HOH B 33 333 60 HOH HOH . H 3 HOH B 34 334 61 HOH HOH . H 3 HOH B 35 335 62 HOH HOH . H 3 HOH B 36 336 63 HOH HOH . H 3 HOH B 37 337 64 HOH HOH . H 3 HOH B 38 338 65 HOH HOH . H 3 HOH B 39 339 66 HOH HOH . H 3 HOH B 40 340 67 HOH HOH . H 3 HOH B 41 341 69 HOH HOH . H 3 HOH B 42 342 71 HOH HOH . H 3 HOH B 43 343 76 HOH HOH . H 3 HOH B 44 344 79 HOH HOH . H 3 HOH B 45 345 80 HOH HOH . H 3 HOH B 46 346 81 HOH HOH . H 3 HOH B 47 347 82 HOH HOH . H 3 HOH B 48 348 83 HOH HOH . H 3 HOH B 49 349 92 HOH HOH . H 3 HOH B 50 350 93 HOH HOH . H 3 HOH B 51 351 94 HOH HOH . H 3 HOH B 52 352 95 HOH HOH . H 3 HOH B 53 353 96 HOH HOH . H 3 HOH B 54 354 97 HOH HOH . H 3 HOH B 55 355 99 HOH HOH . H 3 HOH B 56 356 101 HOH HOH . H 3 HOH B 57 357 102 HOH HOH . H 3 HOH B 58 358 103 HOH HOH . H 3 HOH B 59 359 104 HOH HOH . H 3 HOH B 60 360 109 HOH HOH . H 3 HOH B 61 361 111 HOH HOH . H 3 HOH B 62 362 112 HOH HOH . H 3 HOH B 63 363 113 HOH HOH . H 3 HOH B 64 364 116 HOH HOH . H 3 HOH B 65 365 117 HOH HOH . H 3 HOH B 66 366 118 HOH HOH . H 3 HOH B 67 367 124 HOH HOH . H 3 HOH B 68 368 125 HOH HOH . H 3 HOH B 69 369 128 HOH HOH . H 3 HOH B 70 370 133 HOH HOH . H 3 HOH B 71 371 135 HOH HOH . H 3 HOH B 72 372 140 HOH HOH . H 3 HOH B 73 373 141 HOH HOH . H 3 HOH B 74 374 142 HOH HOH . H 3 HOH B 75 375 145 HOH HOH . H 3 HOH B 76 376 146 HOH HOH . H 3 HOH B 77 377 147 HOH HOH . H 3 HOH B 78 378 148 HOH HOH . H 3 HOH B 79 379 150 HOH HOH . H 3 HOH B 80 380 156 HOH HOH . H 3 HOH B 81 381 160 HOH HOH . H 3 HOH B 82 382 161 HOH HOH . H 3 HOH B 83 383 162 HOH HOH . H 3 HOH B 84 384 167 HOH HOH . H 3 HOH B 85 385 170 HOH HOH . H 3 HOH B 86 386 171 HOH HOH . H 3 HOH B 87 387 172 HOH HOH . H 3 HOH B 88 388 173 HOH HOH . H 3 HOH B 89 389 179 HOH HOH . H 3 HOH B 90 390 181 HOH HOH . H 3 HOH B 91 391 184 HOH HOH . H 3 HOH B 92 392 186 HOH HOH . H 3 HOH B 93 393 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 2 13.063 41.467 6.712 1 40.48 ? C1 PEG 203 B 1 HETATM 2 O O1 PEG . . . F 2 14.433 41.922 6.753 1 43.21 ? O1 PEG 203 B 1 HETATM 3 C C2 PEG . . . F 2 12.82 40.543 5.522 1 41.05 ? C2 PEG 203 B 1 HETATM 4 O O2 PEG . . . F 2 12.467 39.216 5.947 1 35.87 ? O2 PEG 203 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #