data_4RFQ
#
_model_server_result.job_id            JMhbL0sE6eB70e-FA373uA 
_model_server_result.datetime_utc      '2024-11-26 11:31:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rfq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4RFQ 
#
_exptl.entry_id    4RFQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RFQ 
_cell.length_a            70.15 
_cell.length_b            70.15 
_cell.length_c            170.688 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RFQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 85.344 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     4RFQ 
_atom_sites.fract_transf_matrix[1][1]    0.014255 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005859 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 401 1 SAM SAM . 
C 3 UNX A 1 402 1 UNX UNX . 
D 3 UNX A 1 403 2 UNX UNX . 
E 3 UNX A 1 404 3 UNX UNX . 
F 3 UNX A 1 405 4 UNX UNX . 
G 3 UNX A 1 406 7 UNX UNX . 
H 3 UNX A 1 407 8 UNX UNX . 
I 3 UNX A 1 408 9 UNX UNX . 
J 3 UNX A 1 409 10 UNX UNX . 
K 3 UNX A 1 410 27 UNX UNX . 
L 3 UNX A 1 411 30 UNX UNX . 
M 3 UNX A 1 412 31 UNX UNX . 
N 3 UNX A 1 413 33 UNX UNX . 
O 4 HOH A 1 501 1 HOH HOH . 
O 4 HOH A 2 502 2 HOH HOH . 
O 4 HOH A 3 503 3 HOH HOH . 
O 4 HOH A 4 504 4 HOH HOH . 
O 4 HOH A 5 505 5 HOH HOH . 
O 4 HOH A 6 506 6 HOH HOH . 
O 4 HOH A 7 507 7 HOH HOH . 
O 4 HOH A 8 508 8 HOH HOH . 
O 4 HOH A 9 509 9 HOH HOH . 
O 4 HOH A 10 510 10 HOH HOH . 
O 4 HOH A 11 511 11 HOH HOH . 
O 4 HOH A 12 512 12 HOH HOH . 
O 4 HOH A 13 513 13 HOH HOH . 
O 4 HOH A 14 514 14 HOH HOH . 
O 4 HOH A 15 515 15 HOH HOH . 
O 4 HOH A 16 516 16 HOH HOH . 
O 4 HOH A 17 517 17 HOH HOH . 
O 4 HOH A 18 518 18 HOH HOH . 
O 4 HOH A 19 519 19 HOH HOH . 
O 4 HOH A 20 520 20 HOH HOH . 
O 4 HOH A 21 521 21 HOH HOH . 
O 4 HOH A 22 522 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . B 2 8.885 4.639 31.015 1 55.22 ? N SAM 401 A 1 
HETATM 2 C CA SAM . . . B 2 7.621 4.653 31.725 1 55.85 ? CA SAM 401 A 1 
HETATM 3 C C SAM . . . B 2 7.226 3.244 32.139 1 62.94 ? C SAM 401 A 1 
HETATM 4 O O SAM . . . B 2 7.785 2.256 31.577 1 66.35 ? O SAM 401 A 1 
HETATM 5 O OXT SAM . . . B 2 6.345 3.104 33.021 1 59.29 ? OXT SAM 401 A 1 
HETATM 6 C CB SAM . . . B 2 6.575 5.299 30.827 1 44.91 ? CB SAM 401 A 1 
HETATM 7 C CG SAM . . . B 2 6.269 4.472 29.607 1 54.18 ? CG SAM 401 A 1 
HETATM 8 S SD SAM . . . B 2 5.118 5.184 28.616 1 62.67 ? SD SAM 401 A 1 
HETATM 9 C CE SAM . . . B 2 4.189 4.038 27.856 1 66.7 ? CE SAM 401 A 1 
HETATM 10 C C5' SAM . . . B 2 5.912 6.038 27.373 1 71.89 ? C5' SAM 401 A 1 
HETATM 11 C C4' SAM . . . B 2 6.941 7.128 27.771 1 61.11 ? C4' SAM 401 A 1 
HETATM 12 O O4' SAM . . . B 2 7.494 7.738 26.586 1 71.78 ? O4' SAM 401 A 1 
HETATM 13 C C3' SAM . . . B 2 6.369 8.313 28.528 1 63.04 ? C3' SAM 401 A 1 
HETATM 14 O O3' SAM . . . B 2 7.363 8.761 29.469 1 58 ? O3' SAM 401 A 1 
HETATM 15 C C2' SAM . . . B 2 6.071 9.373 27.452 1 58.74 ? C2' SAM 401 A 1 
HETATM 16 O O2' SAM . . . B 2 6.043 10.692 27.961 1 59.66 ? O2' SAM 401 A 1 
HETATM 17 C C1' SAM . . . B 2 7.243 9.177 26.529 1 58.71 ? C1' SAM 401 A 1 
HETATM 18 N N9 SAM . . . B 2 7.092 9.555 25.103 1 53.11 ? N9 SAM 401 A 1 
HETATM 19 C C8 SAM . . . B 2 6.435 8.862 24.16 1 53.69 ? C8 SAM 401 A 1 
HETATM 20 N N7 SAM . . . B 2 6.537 9.453 22.94 1 51.99 ? N7 SAM 401 A 1 
HETATM 21 C C5 SAM . . . B 2 7.267 10.547 23.117 1 50.91 ? C5 SAM 401 A 1 
HETATM 22 C C6 SAM . . . B 2 7.762 11.608 22.238 1 52.27 ? C6 SAM 401 A 1 
HETATM 23 N N6 SAM . . . B 2 7.447 11.605 20.935 1 54.54 ? N6 SAM 401 A 1 
HETATM 24 N N1 SAM . . . B 2 8.503 12.577 22.787 1 49.68 ? N1 SAM 401 A 1 
HETATM 25 C C2 SAM . . . B 2 8.806 12.587 24.104 1 52.71 ? C2 SAM 401 A 1 
HETATM 26 N N3 SAM . . . B 2 8.401 11.645 24.975 1 47.15 ? N3 SAM 401 A 1 
HETATM 27 C C4 SAM . . . B 2 7.637 10.617 24.532 1 53.43 ? C4 SAM 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#