data_4RFY
#
_model_server_result.job_id            '_nUGqDAQZX0Y-kHuTkgtBA' 
_model_server_result.datetime_utc      '2024-11-04 20:37:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rfy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    4RFY 
#
_exptl.entry_id    4RFY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RFY 
_cell.length_a            71.805 
_cell.length_b            107.123 
_cell.length_c            38.305 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RFY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 169 n n 
S C1 DMS sing 170 n n 
S C2 DMS sing 171 n n 
C1 H11 DMS sing 172 n n 
C1 H12 DMS sing 173 n n 
C1 H13 DMS sing 174 n n 
C2 H21 DMS sing 175 n n 
C2 H22 DMS sing 176 n n 
C2 H23 DMS sing 177 n n 
#
_atom_sites.entry_id                     4RFY 
_atom_sites.fract_transf_matrix[1][1]    0.013927 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026106 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 3OU A 1 701 1 3OU 3OU . 
C 3 DMS A 1 702 1 DMS DMS . 
D 3 DMS A 1 703 2 DMS DMS . 
E 4 HOH A 1 801 1002 HOH HOH . 
E 4 HOH A 2 802 1003 HOH HOH . 
E 4 HOH A 3 803 1004 HOH HOH . 
E 4 HOH A 4 804 1005 HOH HOH . 
E 4 HOH A 5 805 1006 HOH HOH . 
E 4 HOH A 6 806 1007 HOH HOH . 
E 4 HOH A 7 807 1008 HOH HOH . 
E 4 HOH A 8 808 1009 HOH HOH . 
E 4 HOH A 9 809 1010 HOH HOH . 
E 4 HOH A 10 810 1011 HOH HOH . 
E 4 HOH A 11 811 1012 HOH HOH . 
E 4 HOH A 12 812 1013 HOH HOH . 
E 4 HOH A 13 813 1014 HOH HOH . 
E 4 HOH A 14 814 1016 HOH HOH . 
E 4 HOH A 15 815 1017 HOH HOH . 
E 4 HOH A 16 816 1018 HOH HOH . 
E 4 HOH A 17 817 1019 HOH HOH . 
E 4 HOH A 18 818 1020 HOH HOH . 
E 4 HOH A 19 819 1021 HOH HOH . 
E 4 HOH A 20 820 1023 HOH HOH . 
E 4 HOH A 21 821 1024 HOH HOH . 
E 4 HOH A 22 822 1025 HOH HOH . 
E 4 HOH A 23 823 1026 HOH HOH . 
E 4 HOH A 24 824 1027 HOH HOH . 
E 4 HOH A 25 825 1029 HOH HOH . 
E 4 HOH A 26 826 1030 HOH HOH . 
E 4 HOH A 27 827 1031 HOH HOH . 
E 4 HOH A 28 828 1032 HOH HOH . 
E 4 HOH A 29 829 1035 HOH HOH . 
E 4 HOH A 30 830 1036 HOH HOH . 
E 4 HOH A 31 831 1038 HOH HOH . 
E 4 HOH A 32 832 1039 HOH HOH . 
E 4 HOH A 33 833 1040 HOH HOH . 
E 4 HOH A 34 834 1041 HOH HOH . 
E 4 HOH A 35 835 1042 HOH HOH . 
E 4 HOH A 36 836 1043 HOH HOH . 
E 4 HOH A 37 837 1045 HOH HOH . 
E 4 HOH A 38 838 1046 HOH HOH . 
E 4 HOH A 39 839 1047 HOH HOH . 
E 4 HOH A 40 840 1048 HOH HOH . 
E 4 HOH A 41 841 1049 HOH HOH . 
E 4 HOH A 42 842 1050 HOH HOH . 
E 4 HOH A 43 843 1051 HOH HOH . 
E 4 HOH A 44 844 1052 HOH HOH . 
E 4 HOH A 45 845 1053 HOH HOH . 
E 4 HOH A 46 846 1054 HOH HOH . 
E 4 HOH A 47 847 1055 HOH HOH . 
E 4 HOH A 48 848 1056 HOH HOH . 
E 4 HOH A 49 849 1058 HOH HOH . 
E 4 HOH A 50 850 1059 HOH HOH . 
E 4 HOH A 51 851 1060 HOH HOH . 
E 4 HOH A 52 852 1061 HOH HOH . 
E 4 HOH A 53 853 1062 HOH HOH . 
E 4 HOH A 54 854 1063 HOH HOH . 
E 4 HOH A 55 855 1064 HOH HOH . 
E 4 HOH A 56 856 1065 HOH HOH . 
E 4 HOH A 57 857 1066 HOH HOH . 
E 4 HOH A 58 858 1067 HOH HOH . 
E 4 HOH A 59 859 1068 HOH HOH . 
E 4 HOH A 60 860 1069 HOH HOH . 
E 4 HOH A 61 861 1070 HOH HOH . 
E 4 HOH A 62 862 1071 HOH HOH . 
E 4 HOH A 63 863 1072 HOH HOH . 
E 4 HOH A 64 864 1073 HOH HOH . 
E 4 HOH A 65 865 1074 HOH HOH . 
E 4 HOH A 66 866 1075 HOH HOH . 
E 4 HOH A 67 867 1076 HOH HOH . 
E 4 HOH A 68 868 1078 HOH HOH . 
E 4 HOH A 69 869 1079 HOH HOH . 
E 4 HOH A 70 870 1080 HOH HOH . 
E 4 HOH A 71 871 1081 HOH HOH . 
E 4 HOH A 72 872 1082 HOH HOH . 
E 4 HOH A 73 873 1083 HOH HOH . 
E 4 HOH A 74 874 1084 HOH HOH . 
E 4 HOH A 75 875 1085 HOH HOH . 
E 4 HOH A 76 876 1086 HOH HOH . 
E 4 HOH A 77 877 1087 HOH HOH . 
E 4 HOH A 78 878 1090 HOH HOH . 
E 4 HOH A 79 879 1091 HOH HOH . 
E 4 HOH A 80 880 1092 HOH HOH . 
E 4 HOH A 81 881 1093 HOH HOH . 
E 4 HOH A 82 882 1094 HOH HOH . 
E 4 HOH A 83 883 1095 HOH HOH . 
E 4 HOH A 84 884 1096 HOH HOH . 
E 4 HOH A 85 885 1097 HOH HOH . 
E 4 HOH A 86 886 1098 HOH HOH . 
E 4 HOH A 87 887 1099 HOH HOH . 
E 4 HOH A 88 888 1100 HOH HOH . 
E 4 HOH A 89 889 1101 HOH HOH . 
E 4 HOH A 90 890 1103 HOH HOH . 
E 4 HOH A 91 891 1107 HOH HOH . 
E 4 HOH A 92 892 1108 HOH HOH . 
E 4 HOH A 93 893 1109 HOH HOH . 
E 4 HOH A 94 894 1111 HOH HOH . 
E 4 HOH A 95 895 1112 HOH HOH . 
E 4 HOH A 96 896 1113 HOH HOH . 
E 4 HOH A 97 897 1114 HOH HOH . 
E 4 HOH A 98 898 1115 HOH HOH . 
E 4 HOH A 99 899 1117 HOH HOH . 
E 4 HOH A 100 900 1118 HOH HOH . 
E 4 HOH A 101 901 1120 HOH HOH . 
E 4 HOH A 102 902 1121 HOH HOH . 
E 4 HOH A 103 903 1123 HOH HOH . 
E 4 HOH A 104 904 1124 HOH HOH . 
E 4 HOH A 105 905 1125 HOH HOH . 
E 4 HOH A 106 906 1126 HOH HOH . 
E 4 HOH A 107 907 1127 HOH HOH . 
E 4 HOH A 108 908 1128 HOH HOH . 
E 4 HOH A 109 909 1129 HOH HOH . 
E 4 HOH A 110 910 1131 HOH HOH . 
E 4 HOH A 111 911 1132 HOH HOH . 
E 4 HOH A 112 912 1133 HOH HOH . 
E 4 HOH A 113 913 1134 HOH HOH . 
E 4 HOH A 114 914 1135 HOH HOH . 
E 4 HOH A 115 915 1138 HOH HOH . 
E 4 HOH A 116 916 1139 HOH HOH . 
E 4 HOH A 117 917 1140 HOH HOH . 
E 4 HOH A 118 918 1142 HOH HOH . 
E 4 HOH A 119 919 1145 HOH HOH . 
E 4 HOH A 120 920 1148 HOH HOH . 
E 4 HOH A 121 921 1149 HOH HOH . 
E 4 HOH A 122 922 1150 HOH HOH . 
E 4 HOH A 123 923 1151 HOH HOH . 
E 4 HOH A 124 924 1152 HOH HOH . 
E 4 HOH A 125 925 1154 HOH HOH . 
E 4 HOH A 126 926 1157 HOH HOH . 
E 4 HOH A 127 927 1158 HOH HOH . 
E 4 HOH A 128 928 1160 HOH HOH . 
E 4 HOH A 129 929 1162 HOH HOH . 
E 4 HOH A 130 930 1164 HOH HOH . 
E 4 HOH A 131 931 1165 HOH HOH . 
E 4 HOH A 132 932 1166 HOH HOH . 
E 4 HOH A 133 933 1169 HOH HOH . 
E 4 HOH A 134 934 1170 HOH HOH . 
E 4 HOH A 135 935 1173 HOH HOH . 
E 4 HOH A 136 936 1175 HOH HOH . 
E 4 HOH A 137 937 1180 HOH HOH . 
E 4 HOH A 138 938 1181 HOH HOH . 
E 4 HOH A 139 939 1185 HOH HOH . 
E 4 HOH A 140 940 1188 HOH HOH . 
E 4 HOH A 141 941 1191 HOH HOH . 
E 4 HOH A 142 942 2001 HOH HOH . 
E 4 HOH A 143 943 2003 HOH HOH . 
E 4 HOH A 144 944 2004 HOH HOH . 
E 4 HOH A 145 945 2005 HOH HOH . 
E 4 HOH A 146 946 2006 HOH HOH . 
E 4 HOH A 147 947 2008 HOH HOH . 
E 4 HOH A 148 948 2009 HOH HOH . 
E 4 HOH A 149 949 2010 HOH HOH . 
E 4 HOH A 150 950 2011 HOH HOH . 
E 4 HOH A 151 951 2012 HOH HOH . 
E 4 HOH A 152 952 2014 HOH HOH . 
E 4 HOH A 153 953 2015 HOH HOH . 
E 4 HOH A 154 954 2017 HOH HOH . 
E 4 HOH A 155 955 2018 HOH HOH . 
E 4 HOH A 156 956 2019 HOH HOH . 
E 4 HOH A 157 957 2020 HOH HOH . 
E 4 HOH A 158 958 2021 HOH HOH . 
E 4 HOH A 159 959 2022 HOH HOH . 
E 4 HOH A 160 960 2023 HOH HOH . 
E 4 HOH A 161 961 2024 HOH HOH . 
E 4 HOH A 162 962 2026 HOH HOH . 
E 4 HOH A 163 963 2027 HOH HOH . 
E 4 HOH A 164 964 2028 HOH HOH . 
E 4 HOH A 165 965 2029 HOH HOH . 
E 4 HOH A 166 966 2030 HOH HOH . 
E 4 HOH A 167 967 2031 HOH HOH . 
E 4 HOH A 168 968 2032 HOH HOH . 
E 4 HOH A 169 969 2033 HOH HOH . 
E 4 HOH A 170 970 2034 HOH HOH . 
E 4 HOH A 171 971 2035 HOH HOH . 
E 4 HOH A 172 972 2036 HOH HOH . 
E 4 HOH A 173 973 2037 HOH HOH . 
E 4 HOH A 174 974 2038 HOH HOH . 
E 4 HOH A 175 975 2039 HOH HOH . 
E 4 HOH A 176 976 2040 HOH HOH . 
E 4 HOH A 177 977 2041 HOH HOH . 
E 4 HOH A 178 978 2042 HOH HOH . 
E 4 HOH A 179 979 2043 HOH HOH . 
E 4 HOH A 180 980 2046 HOH HOH . 
E 4 HOH A 181 981 2047 HOH HOH . 
E 4 HOH A 182 982 2048 HOH HOH . 
E 4 HOH A 183 983 2049 HOH HOH . 
E 4 HOH A 184 984 2050 HOH HOH . 
E 4 HOH A 185 985 2051 HOH HOH . 
E 4 HOH A 186 986 2052 HOH HOH . 
E 4 HOH A 187 987 2053 HOH HOH . 
E 4 HOH A 188 988 2054 HOH HOH . 
E 4 HOH A 189 989 2055 HOH HOH . 
E 4 HOH A 190 990 2056 HOH HOH . 
E 4 HOH A 191 991 2057 HOH HOH . 
E 4 HOH A 192 992 2058 HOH HOH . 
E 4 HOH A 193 993 2059 HOH HOH . 
E 4 HOH A 194 994 2060 HOH HOH . 
E 4 HOH A 195 995 2061 HOH HOH . 
E 4 HOH A 196 996 2062 HOH HOH . 
E 4 HOH A 197 997 2063 HOH HOH . 
E 4 HOH A 198 998 2064 HOH HOH . 
E 4 HOH A 199 999 2065 HOH HOH . 
E 4 HOH A 200 1000 2067 HOH HOH . 
E 4 HOH A 201 1001 2068 HOH HOH . 
E 4 HOH A 202 1002 2070 HOH HOH . 
E 4 HOH A 203 1003 2071 HOH HOH . 
E 4 HOH A 204 1004 2072 HOH HOH . 
E 4 HOH A 205 1005 2073 HOH HOH . 
E 4 HOH A 206 1006 2074 HOH HOH . 
E 4 HOH A 207 1007 2075 HOH HOH . 
E 4 HOH A 208 1008 2076 HOH HOH . 
E 4 HOH A 209 1009 2077 HOH HOH . 
E 4 HOH A 210 1010 2078 HOH HOH . 
E 4 HOH A 211 1011 2079 HOH HOH . 
E 4 HOH A 212 1012 2080 HOH HOH . 
E 4 HOH A 213 1013 2081 HOH HOH . 
E 4 HOH A 214 1014 2082 HOH HOH . 
E 4 HOH A 215 1015 2086 HOH HOH . 
E 4 HOH A 216 1016 2087 HOH HOH . 
E 4 HOH A 217 1017 2088 HOH HOH . 
E 4 HOH A 218 1018 2091 HOH HOH . 
E 4 HOH A 219 1019 2093 HOH HOH . 
E 4 HOH A 220 1020 2096 HOH HOH . 
E 4 HOH A 221 1021 2097 HOH HOH . 
E 4 HOH A 222 1022 2098 HOH HOH . 
E 4 HOH A 223 1023 2099 HOH HOH . 
E 4 HOH A 224 1024 2100 HOH HOH . 
E 4 HOH A 225 1025 2103 HOH HOH . 
E 4 HOH A 226 1026 2105 HOH HOH . 
E 4 HOH A 227 1027 2107 HOH HOH . 
E 4 HOH A 228 1028 2108 HOH HOH . 
E 4 HOH A 229 1029 2110 HOH HOH . 
E 4 HOH A 230 1030 2111 HOH HOH . 
E 4 HOH A 231 1031 2112 HOH HOH . 
E 4 HOH A 232 1032 2120 HOH HOH . 
E 4 HOH A 233 1033 2121 HOH HOH . 
E 4 HOH A 234 1034 2122 HOH HOH . 
E 4 HOH A 235 1035 2123 HOH HOH . 
E 4 HOH A 236 1036 2124 HOH HOH . 
E 4 HOH A 237 1037 2127 HOH HOH . 
E 4 HOH A 238 1038 2129 HOH HOH . 
E 4 HOH A 239 1039 2130 HOH HOH . 
E 4 HOH A 240 1040 2131 HOH HOH . 
E 4 HOH A 241 1041 2132 HOH HOH . 
E 4 HOH A 242 1042 2133 HOH HOH . 
E 4 HOH A 243 1043 2135 HOH HOH . 
E 4 HOH A 244 1044 2139 HOH HOH . 
E 4 HOH A 245 1045 2156 HOH HOH . 
E 4 HOH A 246 1046 2168 HOH HOH . 
E 4 HOH A 247 1047 2184 HOH HOH . 
E 4 HOH A 248 1048 2188 HOH HOH . 
E 4 HOH A 249 1049 2189 HOH HOH . 
E 4 HOH A 250 1050 2198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 21.967 24.356 12.949 1 24.8 ? S DMS 703 A 1 
HETATM 2 O O DMS . . . D 3 20.545 23.816 13.028 1 28.62 ? O DMS 703 A 1 
HETATM 3 C C1 DMS . . . D 3 22.794 23.631 14.29 1 23.03 ? C1 DMS 703 A 1 
HETATM 4 C C2 DMS . . . D 3 22.546 23.4 11.633 1 22.15 ? C2 DMS 703 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#