data_4RFZ # _model_server_result.job_id iiWWkbQdOc24dRs8A0VLIQ _model_server_result.datetime_utc '2024-11-14 23:26:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 4RFZ # _exptl.entry_id 4RFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RFZ _cell.length_a 71.936 _cell.length_b 106.197 _cell.length_c 38.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 167 n n S C1 DMS sing 168 n n S C2 DMS sing 169 n n C1 H11 DMS sing 170 n n C1 H12 DMS sing 171 n n C1 H13 DMS sing 172 n n C2 H21 DMS sing 173 n n C2 H22 DMS sing 174 n n C2 H23 DMS sing 175 n n # _atom_sites.entry_id 4RFZ _atom_sites.fract_transf_matrix[1][1] 0.013901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3OV A 1 701 1 3OV 148 . C 3 DMS A 1 702 1 DMS DMS . D 3 DMS A 1 703 2 DMS DMS . E 4 HOH A 1 801 1002 HOH HOH . E 4 HOH A 2 802 1003 HOH HOH . E 4 HOH A 3 803 1004 HOH HOH . E 4 HOH A 4 804 1005 HOH HOH . E 4 HOH A 5 805 1006 HOH HOH . E 4 HOH A 6 806 1007 HOH HOH . E 4 HOH A 7 807 1008 HOH HOH . E 4 HOH A 8 808 1009 HOH HOH . E 4 HOH A 9 809 1010 HOH HOH . E 4 HOH A 10 810 1011 HOH HOH . E 4 HOH A 11 811 1012 HOH HOH . E 4 HOH A 12 812 1013 HOH HOH . E 4 HOH A 13 813 1014 HOH HOH . E 4 HOH A 14 814 1015 HOH HOH . E 4 HOH A 15 815 1016 HOH HOH . E 4 HOH A 16 816 1017 HOH HOH . E 4 HOH A 17 817 1018 HOH HOH . E 4 HOH A 18 818 1019 HOH HOH . E 4 HOH A 19 819 1020 HOH HOH . E 4 HOH A 20 820 1021 HOH HOH . E 4 HOH A 21 821 1022 HOH HOH . E 4 HOH A 22 822 1023 HOH HOH . E 4 HOH A 23 823 1025 HOH HOH . E 4 HOH A 24 824 1026 HOH HOH . E 4 HOH A 25 825 1027 HOH HOH . E 4 HOH A 26 826 1029 HOH HOH . E 4 HOH A 27 827 1030 HOH HOH . E 4 HOH A 28 828 1031 HOH HOH . E 4 HOH A 29 829 1032 HOH HOH . E 4 HOH A 30 830 1033 HOH HOH . E 4 HOH A 31 831 1034 HOH HOH . E 4 HOH A 32 832 1035 HOH HOH . E 4 HOH A 33 833 1036 HOH HOH . E 4 HOH A 34 834 1037 HOH HOH . E 4 HOH A 35 835 1039 HOH HOH . E 4 HOH A 36 836 1040 HOH HOH . E 4 HOH A 37 837 1041 HOH HOH . E 4 HOH A 38 838 1042 HOH HOH . E 4 HOH A 39 839 1043 HOH HOH . E 4 HOH A 40 840 1045 HOH HOH . E 4 HOH A 41 841 1046 HOH HOH . E 4 HOH A 42 842 1047 HOH HOH . E 4 HOH A 43 843 1048 HOH HOH . E 4 HOH A 44 844 1049 HOH HOH . E 4 HOH A 45 845 1050 HOH HOH . E 4 HOH A 46 846 1051 HOH HOH . E 4 HOH A 47 847 1052 HOH HOH . E 4 HOH A 48 848 1054 HOH HOH . E 4 HOH A 49 849 1055 HOH HOH . E 4 HOH A 50 850 1056 HOH HOH . E 4 HOH A 51 851 1057 HOH HOH . E 4 HOH A 52 852 1058 HOH HOH . E 4 HOH A 53 853 1059 HOH HOH . E 4 HOH A 54 854 1060 HOH HOH . E 4 HOH A 55 855 1061 HOH HOH . E 4 HOH A 56 856 1063 HOH HOH . E 4 HOH A 57 857 1064 HOH HOH . E 4 HOH A 58 858 1065 HOH HOH . E 4 HOH A 59 859 1066 HOH HOH . E 4 HOH A 60 860 1067 HOH HOH . E 4 HOH A 61 861 1069 HOH HOH . E 4 HOH A 62 862 1070 HOH HOH . E 4 HOH A 63 863 1071 HOH HOH . E 4 HOH A 64 864 1072 HOH HOH . E 4 HOH A 65 865 1073 HOH HOH . E 4 HOH A 66 866 1074 HOH HOH . E 4 HOH A 67 867 1075 HOH HOH . E 4 HOH A 68 868 1076 HOH HOH . E 4 HOH A 69 869 1077 HOH HOH . E 4 HOH A 70 870 1078 HOH HOH . E 4 HOH A 71 871 1079 HOH HOH . E 4 HOH A 72 872 1080 HOH HOH . E 4 HOH A 73 873 1081 HOH HOH . E 4 HOH A 74 874 1082 HOH HOH . E 4 HOH A 75 875 1083 HOH HOH . E 4 HOH A 76 876 1084 HOH HOH . E 4 HOH A 77 877 1085 HOH HOH . E 4 HOH A 78 878 1086 HOH HOH . E 4 HOH A 79 879 1087 HOH HOH . E 4 HOH A 80 880 1088 HOH HOH . E 4 HOH A 81 881 1090 HOH HOH . E 4 HOH A 82 882 1092 HOH HOH . E 4 HOH A 83 883 1093 HOH HOH . E 4 HOH A 84 884 1095 HOH HOH . E 4 HOH A 85 885 1097 HOH HOH . E 4 HOH A 86 886 1099 HOH HOH . E 4 HOH A 87 887 1100 HOH HOH . E 4 HOH A 88 888 1101 HOH HOH . E 4 HOH A 89 889 1103 HOH HOH . E 4 HOH A 90 890 1104 HOH HOH . E 4 HOH A 91 891 1105 HOH HOH . E 4 HOH A 92 892 1106 HOH HOH . E 4 HOH A 93 893 1107 HOH HOH . E 4 HOH A 94 894 1108 HOH HOH . E 4 HOH A 95 895 1109 HOH HOH . E 4 HOH A 96 896 1110 HOH HOH . E 4 HOH A 97 897 1111 HOH HOH . E 4 HOH A 98 898 1114 HOH HOH . E 4 HOH A 99 899 1115 HOH HOH . E 4 HOH A 100 900 1116 HOH HOH . E 4 HOH A 101 901 1117 HOH HOH . E 4 HOH A 102 902 1118 HOH HOH . E 4 HOH A 103 903 1119 HOH HOH . E 4 HOH A 104 904 1120 HOH HOH . E 4 HOH A 105 905 1121 HOH HOH . E 4 HOH A 106 906 1122 HOH HOH . E 4 HOH A 107 907 1123 HOH HOH . E 4 HOH A 108 908 1124 HOH HOH . E 4 HOH A 109 909 1125 HOH HOH . E 4 HOH A 110 910 1128 HOH HOH . E 4 HOH A 111 911 1129 HOH HOH . E 4 HOH A 112 912 1130 HOH HOH . E 4 HOH A 113 913 1131 HOH HOH . E 4 HOH A 114 914 1132 HOH HOH . E 4 HOH A 115 915 1133 HOH HOH . E 4 HOH A 116 916 1134 HOH HOH . E 4 HOH A 117 917 1135 HOH HOH . E 4 HOH A 118 918 1136 HOH HOH . E 4 HOH A 119 919 1137 HOH HOH . E 4 HOH A 120 920 1139 HOH HOH . E 4 HOH A 121 921 1140 HOH HOH . E 4 HOH A 122 922 1141 HOH HOH . E 4 HOH A 123 923 1142 HOH HOH . E 4 HOH A 124 924 1143 HOH HOH . E 4 HOH A 125 925 1144 HOH HOH . E 4 HOH A 126 926 1145 HOH HOH . E 4 HOH A 127 927 1146 HOH HOH . E 4 HOH A 128 928 1147 HOH HOH . E 4 HOH A 129 929 1149 HOH HOH . E 4 HOH A 130 930 1150 HOH HOH . E 4 HOH A 131 931 1151 HOH HOH . E 4 HOH A 132 932 1152 HOH HOH . E 4 HOH A 133 933 1153 HOH HOH . E 4 HOH A 134 934 1154 HOH HOH . E 4 HOH A 135 935 1155 HOH HOH . E 4 HOH A 136 936 1156 HOH HOH . E 4 HOH A 137 937 1157 HOH HOH . E 4 HOH A 138 938 1158 HOH HOH . E 4 HOH A 139 939 1159 HOH HOH . E 4 HOH A 140 940 1161 HOH HOH . E 4 HOH A 141 941 1162 HOH HOH . E 4 HOH A 142 942 1163 HOH HOH . E 4 HOH A 143 943 1164 HOH HOH . E 4 HOH A 144 944 1165 HOH HOH . E 4 HOH A 145 945 1166 HOH HOH . E 4 HOH A 146 946 1168 HOH HOH . E 4 HOH A 147 947 1169 HOH HOH . E 4 HOH A 148 948 1170 HOH HOH . E 4 HOH A 149 949 1171 HOH HOH . E 4 HOH A 150 950 1172 HOH HOH . E 4 HOH A 151 951 1173 HOH HOH . E 4 HOH A 152 952 1174 HOH HOH . E 4 HOH A 153 953 1175 HOH HOH . E 4 HOH A 154 954 1176 HOH HOH . E 4 HOH A 155 955 1177 HOH HOH . E 4 HOH A 156 956 1178 HOH HOH . E 4 HOH A 157 957 1179 HOH HOH . E 4 HOH A 158 958 1180 HOH HOH . E 4 HOH A 159 959 1181 HOH HOH . E 4 HOH A 160 960 1182 HOH HOH . E 4 HOH A 161 961 1183 HOH HOH . E 4 HOH A 162 962 1184 HOH HOH . E 4 HOH A 163 963 1185 HOH HOH . E 4 HOH A 164 964 1186 HOH HOH . E 4 HOH A 165 965 1187 HOH HOH . E 4 HOH A 166 966 1188 HOH HOH . E 4 HOH A 167 967 1189 HOH HOH . E 4 HOH A 168 968 1190 HOH HOH . E 4 HOH A 169 969 1191 HOH HOH . E 4 HOH A 170 970 1192 HOH HOH . E 4 HOH A 171 971 1193 HOH HOH . E 4 HOH A 172 972 1194 HOH HOH . E 4 HOH A 173 973 1195 HOH HOH . E 4 HOH A 174 974 1197 HOH HOH . E 4 HOH A 175 975 1198 HOH HOH . E 4 HOH A 176 976 2001 HOH HOH . E 4 HOH A 177 977 2002 HOH HOH . E 4 HOH A 178 978 2003 HOH HOH . E 4 HOH A 179 979 2004 HOH HOH . E 4 HOH A 180 980 2005 HOH HOH . E 4 HOH A 181 981 2006 HOH HOH . E 4 HOH A 182 982 2007 HOH HOH . E 4 HOH A 183 983 2009 HOH HOH . E 4 HOH A 184 984 2010 HOH HOH . E 4 HOH A 185 985 2011 HOH HOH . E 4 HOH A 186 986 2012 HOH HOH . E 4 HOH A 187 987 2013 HOH HOH . E 4 HOH A 188 988 2014 HOH HOH . E 4 HOH A 189 989 2015 HOH HOH . E 4 HOH A 190 990 2016 HOH HOH . E 4 HOH A 191 991 2017 HOH HOH . E 4 HOH A 192 992 2019 HOH HOH . E 4 HOH A 193 993 2020 HOH HOH . E 4 HOH A 194 994 2021 HOH HOH . E 4 HOH A 195 995 2022 HOH HOH . E 4 HOH A 196 996 2023 HOH HOH . E 4 HOH A 197 997 2024 HOH HOH . E 4 HOH A 198 998 2025 HOH HOH . E 4 HOH A 199 999 2026 HOH HOH . E 4 HOH A 200 1000 2027 HOH HOH . E 4 HOH A 201 1001 2028 HOH HOH . E 4 HOH A 202 1002 2029 HOH HOH . E 4 HOH A 203 1003 2030 HOH HOH . E 4 HOH A 204 1004 2031 HOH HOH . E 4 HOH A 205 1005 2032 HOH HOH . E 4 HOH A 206 1006 2033 HOH HOH . E 4 HOH A 207 1007 2034 HOH HOH . E 4 HOH A 208 1008 2035 HOH HOH . E 4 HOH A 209 1009 2036 HOH HOH . E 4 HOH A 210 1010 2037 HOH HOH . E 4 HOH A 211 1011 2039 HOH HOH . E 4 HOH A 212 1012 2040 HOH HOH . E 4 HOH A 213 1013 2041 HOH HOH . E 4 HOH A 214 1014 2044 HOH HOH . E 4 HOH A 215 1015 2045 HOH HOH . E 4 HOH A 216 1016 2046 HOH HOH . E 4 HOH A 217 1017 2047 HOH HOH . E 4 HOH A 218 1018 2048 HOH HOH . E 4 HOH A 219 1019 2049 HOH HOH . E 4 HOH A 220 1020 2050 HOH HOH . E 4 HOH A 221 1021 2052 HOH HOH . E 4 HOH A 222 1022 2053 HOH HOH . E 4 HOH A 223 1023 2054 HOH HOH . E 4 HOH A 224 1024 2055 HOH HOH . E 4 HOH A 225 1025 2056 HOH HOH . E 4 HOH A 226 1026 2057 HOH HOH . E 4 HOH A 227 1027 2058 HOH HOH . E 4 HOH A 228 1028 2059 HOH HOH . E 4 HOH A 229 1029 2060 HOH HOH . E 4 HOH A 230 1030 2061 HOH HOH . E 4 HOH A 231 1031 2062 HOH HOH . E 4 HOH A 232 1032 2064 HOH HOH . E 4 HOH A 233 1033 2065 HOH HOH . E 4 HOH A 234 1034 2066 HOH HOH . E 4 HOH A 235 1035 2067 HOH HOH . E 4 HOH A 236 1036 2068 HOH HOH . E 4 HOH A 237 1037 2069 HOH HOH . E 4 HOH A 238 1038 2070 HOH HOH . E 4 HOH A 239 1039 2072 HOH HOH . E 4 HOH A 240 1040 2073 HOH HOH . E 4 HOH A 241 1041 2074 HOH HOH . E 4 HOH A 242 1042 2075 HOH HOH . E 4 HOH A 243 1043 2078 HOH HOH . E 4 HOH A 244 1044 2079 HOH HOH . E 4 HOH A 245 1045 2080 HOH HOH . E 4 HOH A 246 1046 2082 HOH HOH . E 4 HOH A 247 1047 2084 HOH HOH . E 4 HOH A 248 1048 2085 HOH HOH . E 4 HOH A 249 1049 2086 HOH HOH . E 4 HOH A 250 1050 2087 HOH HOH . E 4 HOH A 251 1051 2088 HOH HOH . E 4 HOH A 252 1052 2089 HOH HOH . E 4 HOH A 253 1053 2090 HOH HOH . E 4 HOH A 254 1054 2091 HOH HOH . E 4 HOH A 255 1055 2092 HOH HOH . E 4 HOH A 256 1056 2093 HOH HOH . E 4 HOH A 257 1057 2094 HOH HOH . E 4 HOH A 258 1058 2095 HOH HOH . E 4 HOH A 259 1059 2096 HOH HOH . E 4 HOH A 260 1060 2097 HOH HOH . E 4 HOH A 261 1061 2098 HOH HOH . E 4 HOH A 262 1062 2099 HOH HOH . E 4 HOH A 263 1063 2100 HOH HOH . E 4 HOH A 264 1064 2101 HOH HOH . E 4 HOH A 265 1065 2103 HOH HOH . E 4 HOH A 266 1066 2104 HOH HOH . E 4 HOH A 267 1067 2105 HOH HOH . E 4 HOH A 268 1068 2107 HOH HOH . E 4 HOH A 269 1069 2108 HOH HOH . E 4 HOH A 270 1070 2110 HOH HOH . E 4 HOH A 271 1071 2111 HOH HOH . E 4 HOH A 272 1072 2112 HOH HOH . E 4 HOH A 273 1073 2113 HOH HOH . E 4 HOH A 274 1074 2114 HOH HOH . E 4 HOH A 275 1075 2115 HOH HOH . E 4 HOH A 276 1076 2117 HOH HOH . E 4 HOH A 277 1077 2118 HOH HOH . E 4 HOH A 278 1078 2119 HOH HOH . E 4 HOH A 279 1079 2120 HOH HOH . E 4 HOH A 280 1080 2121 HOH HOH . E 4 HOH A 281 1081 2124 HOH HOH . E 4 HOH A 282 1082 2127 HOH HOH . E 4 HOH A 283 1083 2128 HOH HOH . E 4 HOH A 284 1084 2129 HOH HOH . E 4 HOH A 285 1085 2130 HOH HOH . E 4 HOH A 286 1086 2138 HOH HOH . E 4 HOH A 287 1087 2140 HOH HOH . E 4 HOH A 288 1088 2143 HOH HOH . E 4 HOH A 289 1089 2146 HOH HOH . E 4 HOH A 290 1090 2160 HOH HOH . E 4 HOH A 291 1091 2162 HOH HOH . E 4 HOH A 292 1092 2172 HOH HOH . E 4 HOH A 293 1093 2178 HOH HOH . E 4 HOH A 294 1094 2196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 26.34 18.778 16.728 1 26.07 ? S DMS 702 A 1 HETATM 2 O O DMS . . . C 3 26.131 17.492 17.507 1 25.73 ? O DMS 702 A 1 HETATM 3 C C1 DMS . . . C 3 26.553 18.439 15.107 1 26.1 ? C1 DMS 702 A 1 HETATM 4 C C2 DMS . . . C 3 24.839 19.647 16.818 1 27.63 ? C2 DMS 702 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #