data_4RG3 # _model_server_result.job_id qkjCovii3Pa0v7p0X9ARbQ _model_server_result.datetime_utc '2025-07-04 18:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4RG3 # _exptl.entry_id 4RG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RG3 _cell.length_a 55.698 _cell.length_b 67.06 _cell.length_c 131.641 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 124 n n PA O2A FAD sing 125 n n PA O5B FAD sing 126 n n PA O3P FAD sing 127 n n O2A HOA2 FAD sing 128 n n O5B C5B FAD sing 129 n n C5B C4B FAD sing 130 n n C5B H51A FAD sing 131 n n C5B H52A FAD sing 132 n n C4B O4B FAD sing 133 n n C4B C3B FAD sing 134 n n C4B H4B FAD sing 135 n n O4B C1B FAD sing 136 n n C3B O3B FAD sing 137 n n C3B C2B FAD sing 138 n n C3B H3B FAD sing 139 n n O3B HO3A FAD sing 140 n n C2B O2B FAD sing 141 n n C2B C1B FAD sing 142 n n C2B H2B FAD sing 143 n n O2B HO2A FAD sing 144 n n C1B N9A FAD sing 145 n n C1B H1B FAD sing 146 n n N9A C8A FAD sing 147 n y N9A C4A FAD sing 148 n y C8A N7A FAD doub 149 n y C8A H8A FAD sing 150 n n N7A C5A FAD sing 151 n y C5A C6A FAD sing 152 n y C5A C4A FAD doub 153 n y C6A N6A FAD sing 154 n n C6A N1A FAD doub 155 n y N6A H61A FAD sing 156 n n N6A H62A FAD sing 157 n n N1A C2A FAD sing 158 n y C2A N3A FAD doub 159 n y C2A H2A FAD sing 160 n n N3A C4A FAD sing 161 n y N1 C2 FAD sing 162 n n N1 C10 FAD doub 163 n n C2 O2 FAD doub 164 n n C2 N3 FAD sing 165 n n N3 C4 FAD sing 166 n n N3 HN3 FAD sing 167 n n C4 O4 FAD doub 168 n n C4 C4X FAD sing 169 n n C4X N5 FAD doub 170 n n C4X C10 FAD sing 171 n n N5 C5X FAD sing 172 n n C5X C6 FAD doub 173 n y C5X C9A FAD sing 174 n y C6 C7 FAD sing 175 n y C6 H6 FAD sing 176 n n C7 C7M FAD sing 177 n n C7 C8 FAD doub 178 n y C7M HM71 FAD sing 179 n n C7M HM72 FAD sing 180 n n C7M HM73 FAD sing 181 n n C8 C8M FAD sing 182 n n C8 C9 FAD sing 183 n y C8M HM81 FAD sing 184 n n C8M HM82 FAD sing 185 n n C8M HM83 FAD sing 186 n n C9 C9A FAD doub 187 n y C9 H9 FAD sing 188 n n C9A N10 FAD sing 189 n n N10 C10 FAD sing 190 n n N10 C1' FAD sing 191 n n C1' C2' FAD sing 192 n n C1' "H1'1" FAD sing 193 n n C1' "H1'2" FAD sing 194 n n C2' O2' FAD sing 195 n n C2' C3' FAD sing 196 n n C2' H2' FAD sing 197 n n O2' HO2' FAD sing 198 n n C3' O3' FAD sing 199 n n C3' C4' FAD sing 200 n n C3' H3' FAD sing 201 n n O3' HO3' FAD sing 202 n n C4' O4' FAD sing 203 n n C4' C5' FAD sing 204 n n C4' H4' FAD sing 205 n n O4' HO4' FAD sing 206 n n C5' O5' FAD sing 207 n n C5' "H5'1" FAD sing 208 n n C5' "H5'2" FAD sing 209 n n O5' P FAD sing 210 n n P O1P FAD doub 211 n n P O2P FAD sing 212 n n P O3P FAD sing 213 n n O2P HOP2 FAD sing 214 n n # _atom_sites.entry_id 4RG3 _atom_sites.fract_transf_matrix[1][1] 0.017954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 541 FAD FAD . C 3 NAP A 1 602 542 NAP NAP . D 4 ECE A 1 603 543 ECE LIG . E 5 BCN A 1 604 544 BCN BCN . F 6 HOH A 1 701 1 HOH HOH . F 6 HOH A 2 702 2 HOH HOH . F 6 HOH A 3 703 3 HOH HOH . F 6 HOH A 4 704 4 HOH HOH . F 6 HOH A 5 705 5 HOH HOH . F 6 HOH A 6 706 6 HOH HOH . F 6 HOH A 7 707 7 HOH HOH . F 6 HOH A 8 708 8 HOH HOH . F 6 HOH A 9 709 9 HOH HOH . F 6 HOH A 10 710 10 HOH HOH . F 6 HOH A 11 711 11 HOH HOH . F 6 HOH A 12 712 12 HOH HOH . F 6 HOH A 13 713 13 HOH HOH . F 6 HOH A 14 714 14 HOH HOH . F 6 HOH A 15 715 15 HOH HOH . F 6 HOH A 16 716 16 HOH HOH . F 6 HOH A 17 717 17 HOH HOH . F 6 HOH A 18 718 18 HOH HOH . F 6 HOH A 19 719 19 HOH HOH . F 6 HOH A 20 720 20 HOH HOH . F 6 HOH A 21 721 21 HOH HOH . F 6 HOH A 22 722 22 HOH HOH . F 6 HOH A 23 723 23 HOH HOH . F 6 HOH A 24 724 24 HOH HOH . F 6 HOH A 25 725 25 HOH HOH . F 6 HOH A 26 726 26 HOH HOH . F 6 HOH A 27 727 27 HOH HOH . F 6 HOH A 28 728 28 HOH HOH . F 6 HOH A 29 729 29 HOH HOH . F 6 HOH A 30 730 30 HOH HOH . F 6 HOH A 31 731 31 HOH HOH . F 6 HOH A 32 732 32 HOH HOH . F 6 HOH A 33 733 33 HOH HOH . F 6 HOH A 34 734 34 HOH HOH . F 6 HOH A 35 735 35 HOH HOH . F 6 HOH A 36 736 36 HOH HOH . F 6 HOH A 37 737 37 HOH HOH . F 6 HOH A 38 738 38 HOH HOH . F 6 HOH A 39 739 39 HOH HOH . F 6 HOH A 40 740 40 HOH HOH . F 6 HOH A 41 741 41 HOH HOH . F 6 HOH A 42 742 42 HOH HOH . F 6 HOH A 43 743 43 HOH HOH . F 6 HOH A 44 744 44 HOH HOH . F 6 HOH A 45 745 45 HOH HOH . F 6 HOH A 46 746 46 HOH HOH . F 6 HOH A 47 747 47 HOH HOH . F 6 HOH A 48 748 48 HOH HOH . F 6 HOH A 49 749 49 HOH HOH . F 6 HOH A 50 750 50 HOH HOH . F 6 HOH A 51 751 51 HOH HOH . F 6 HOH A 52 752 52 HOH HOH . F 6 HOH A 53 753 53 HOH HOH . F 6 HOH A 54 754 54 HOH HOH . F 6 HOH A 55 755 55 HOH HOH . F 6 HOH A 56 756 56 HOH HOH . F 6 HOH A 57 757 57 HOH HOH . F 6 HOH A 58 758 58 HOH HOH . F 6 HOH A 59 759 59 HOH HOH . F 6 HOH A 60 760 60 HOH HOH . F 6 HOH A 61 761 61 HOH HOH . F 6 HOH A 62 762 62 HOH HOH . F 6 HOH A 63 763 63 HOH HOH . F 6 HOH A 64 764 64 HOH HOH . F 6 HOH A 65 765 67 HOH HOH . F 6 HOH A 66 766 68 HOH HOH . F 6 HOH A 67 767 69 HOH HOH . F 6 HOH A 68 768 70 HOH HOH . F 6 HOH A 69 769 71 HOH HOH . F 6 HOH A 70 770 72 HOH HOH . F 6 HOH A 71 771 73 HOH HOH . F 6 HOH A 72 772 74 HOH HOH . F 6 HOH A 73 773 75 HOH HOH . F 6 HOH A 74 774 76 HOH HOH . F 6 HOH A 75 775 77 HOH HOH . F 6 HOH A 76 776 78 HOH HOH . F 6 HOH A 77 777 79 HOH HOH . F 6 HOH A 78 778 80 HOH HOH . F 6 HOH A 79 779 81 HOH HOH . F 6 HOH A 80 780 82 HOH HOH . F 6 HOH A 81 781 83 HOH HOH . F 6 HOH A 82 782 84 HOH HOH . F 6 HOH A 83 783 85 HOH HOH . F 6 HOH A 84 784 86 HOH HOH . F 6 HOH A 85 785 87 HOH HOH . F 6 HOH A 86 786 88 HOH HOH . F 6 HOH A 87 787 89 HOH HOH . F 6 HOH A 88 788 90 HOH HOH . F 6 HOH A 89 789 92 HOH HOH . F 6 HOH A 90 790 93 HOH HOH . F 6 HOH A 91 791 94 HOH HOH . F 6 HOH A 92 792 95 HOH HOH . F 6 HOH A 93 793 96 HOH HOH . F 6 HOH A 94 794 98 HOH HOH . F 6 HOH A 95 795 99 HOH HOH . F 6 HOH A 96 796 100 HOH HOH . F 6 HOH A 97 797 101 HOH HOH . F 6 HOH A 98 798 103 HOH HOH . F 6 HOH A 99 799 104 HOH HOH . F 6 HOH A 100 800 105 HOH HOH . F 6 HOH A 101 801 106 HOH HOH . F 6 HOH A 102 802 107 HOH HOH . F 6 HOH A 103 803 108 HOH HOH . F 6 HOH A 104 804 109 HOH HOH . F 6 HOH A 105 805 110 HOH HOH . F 6 HOH A 106 806 111 HOH HOH . F 6 HOH A 107 807 112 HOH HOH . F 6 HOH A 108 808 113 HOH HOH . F 6 HOH A 109 809 114 HOH HOH . F 6 HOH A 110 810 116 HOH HOH . F 6 HOH A 111 811 117 HOH HOH . F 6 HOH A 112 812 119 HOH HOH . F 6 HOH A 113 813 120 HOH HOH . F 6 HOH A 114 814 121 HOH HOH . F 6 HOH A 115 815 122 HOH HOH . F 6 HOH A 116 816 124 HOH HOH . F 6 HOH A 117 817 127 HOH HOH . F 6 HOH A 118 818 129 HOH HOH . F 6 HOH A 119 819 131 HOH HOH . F 6 HOH A 120 820 132 HOH HOH . F 6 HOH A 121 821 133 HOH HOH . F 6 HOH A 122 822 134 HOH HOH . F 6 HOH A 123 823 135 HOH HOH . F 6 HOH A 124 824 136 HOH HOH . F 6 HOH A 125 825 137 HOH HOH . F 6 HOH A 126 826 138 HOH HOH . F 6 HOH A 127 827 139 HOH HOH . F 6 HOH A 128 828 140 HOH HOH . F 6 HOH A 129 829 141 HOH HOH . F 6 HOH A 130 830 142 HOH HOH . F 6 HOH A 131 831 145 HOH HOH . F 6 HOH A 132 832 146 HOH HOH . F 6 HOH A 133 833 148 HOH HOH . F 6 HOH A 134 834 149 HOH HOH . F 6 HOH A 135 835 150 HOH HOH . F 6 HOH A 136 836 151 HOH HOH . F 6 HOH A 137 837 154 HOH HOH . F 6 HOH A 138 838 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 10.434 5.325 10.769 1 20.83 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . B 2 9.406 4.26 10.693 1 21.44 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . B 2 11.904 4.993 10.927 1 21.82 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . B 2 10.121 6.313 9.534 1 22.08 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . B 2 11.093 7.358 9.303 1 22.16 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . B 2 10.96 7.702 7.83 1 23.86 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . B 2 11.553 8.953 7.515 1 22.97 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . B 2 11.619 6.654 6.912 1 23.69 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . B 2 10.659 6.095 6.041 1 22.32 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . B 2 12.594 7.454 6.069 1 25.43 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . B 2 12.768 7.031 4.71 1 27.44 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . B 2 12.034 8.855 6.177 1 23.14 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . B 2 13.051 9.88 6.031 1 22.91 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . B 2 14.116 10.064 6.844 1 22.69 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . B 2 14.843 11.112 6.449 1 24.66 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . B 2 14.245 11.63 5.366 1 24.21 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . B 2 14.435 12.746 4.447 1 23.7 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . B 2 15.47 13.556 4.566 1 24.73 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . B 2 13.539 12.986 3.477 1 26.48 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . B 2 12.494 12.184 3.312 1 26.6 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . B 2 12.258 11.127 4.091 1 23.72 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . B 2 13.06 10.805 5.109 1 24.57 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . B 2 9.665 -0.425 18.032 1 21.71 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . B 2 8.798 -0.92 18.956 1 24.19 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . B 2 8.206 -0.188 19.732 1 22.46 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . B 2 8.464 -2.192 18.995 1 22.4 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . B 2 8.975 -3.047 18.102 1 25.94 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . B 2 8.626 -4.23 18.161 1 33.4 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . B 2 9.914 -2.614 17.062 1 24.51 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . B 2 10.492 -3.471 16.147 1 25.39 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . B 2 11.361 -2.983 15.252 1 25.94 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . B 2 11.925 -3.834 14.321 1 26.8 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . B 2 12.815 -3.357 13.401 1 25.84 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . B 2 13.419 -4.298 12.404 1 32.43 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . B 2 13.204 -1.955 13.416 1 27.33 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . B 2 14.186 -1.454 12.399 1 29.79 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . B 2 12.624 -1.071 14.312 1 24.99 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . B 2 11.731 -1.548 15.259 1 24.54 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . B 2 11.146 -0.708 16.222 1 21.99 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . B 2 10.242 -1.218 17.122 1 21.34 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . B 2 11.381 0.728 16.25 1 23.91 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . B 2 10.536 1.33 15.118 1 23.39 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . B 2 11.352 2.05 14.215 1 24.2 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . B 2 9.403 2.216 15.61 1 20.97 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . B 2 8.458 1.377 16.239 1 22.53 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . B 2 8.607 2.969 14.556 1 22.1 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . B 2 8.398 2.184 13.366 1 22.31 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . B 2 9.239 4.295 14.179 1 21.52 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . B 2 8.359 4.981 13.273 1 20.33 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . B 2 8.766 6.477 12.861 1 21.88 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . B 2 7.612 7.031 12.055 1 21.64 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . B 2 9.054 7.292 14.095 1 23.98 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . B 2 10.123 6.403 11.971 1 21.33 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #