data_4RG3 # _model_server_result.job_id fQDiWta4DQZcsQ-Mhh6-mg _model_server_result.datetime_utc '2025-07-04 17:01:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4RG3 # _exptl.entry_id 4RG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RG3 _cell.length_a 55.698 _cell.length_b 67.06 _cell.length_c 131.641 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 369 n n PA O2A NAP sing 370 n n PA O5B NAP sing 371 n n PA O3 NAP sing 372 n n O2A HOA2 NAP sing 373 n n O5B C5B NAP sing 374 n n C5B C4B NAP sing 375 n n C5B H51A NAP sing 376 n n C5B H52A NAP sing 377 n n C4B O4B NAP sing 378 n n C4B C3B NAP sing 379 n n C4B H4B NAP sing 380 n n O4B C1B NAP sing 381 n n C3B O3B NAP sing 382 n n C3B C2B NAP sing 383 n n C3B H3B NAP sing 384 n n O3B HO3A NAP sing 385 n n C2B O2B NAP sing 386 n n C2B C1B NAP sing 387 n n C2B H2B NAP sing 388 n n O2B P2B NAP sing 389 n n C1B N9A NAP sing 390 n n C1B H1B NAP sing 391 n n N9A C8A NAP sing 392 n y N9A C4A NAP sing 393 n y C8A N7A NAP doub 394 n y C8A H8A NAP sing 395 n n N7A C5A NAP sing 396 n y C5A C6A NAP sing 397 n y C5A C4A NAP doub 398 n y C6A N6A NAP sing 399 n n C6A N1A NAP doub 400 n y N6A H61A NAP sing 401 n n N6A H62A NAP sing 402 n n N1A C2A NAP sing 403 n y C2A N3A NAP doub 404 n y C2A H2A NAP sing 405 n n N3A C4A NAP sing 406 n y O3 PN NAP sing 407 n n PN O1N NAP doub 408 n n PN O2N NAP sing 409 n n PN O5D NAP sing 410 n n O5D C5D NAP sing 411 n n C5D C4D NAP sing 412 n n C5D H51N NAP sing 413 n n C5D H52N NAP sing 414 n n C4D O4D NAP sing 415 n n C4D C3D NAP sing 416 n n C4D H4D NAP sing 417 n n O4D C1D NAP sing 418 n n C3D O3D NAP sing 419 n n C3D C2D NAP sing 420 n n C3D H3D NAP sing 421 n n O3D HO3N NAP sing 422 n n C2D O2D NAP sing 423 n n C2D C1D NAP sing 424 n n C2D H2D NAP sing 425 n n O2D HO2N NAP sing 426 n n C1D N1N NAP sing 427 n n C1D H1D NAP sing 428 n n N1N C2N NAP sing 429 n y N1N C6N NAP doub 430 n y C2N C3N NAP doub 431 n y C2N H2N NAP sing 432 n n C3N C7N NAP sing 433 n n C3N C4N NAP sing 434 n y C7N O7N NAP doub 435 n n C7N N7N NAP sing 436 n n N7N H71N NAP sing 437 n n N7N H72N NAP sing 438 n n C4N C5N NAP doub 439 n y C4N H4N NAP sing 440 n n C5N C6N NAP sing 441 n y C5N H5N NAP sing 442 n n C6N H6N NAP sing 443 n n P2B O1X NAP doub 444 n n P2B O2X NAP sing 445 n n P2B O3X NAP sing 446 n n O2X HOP2 NAP sing 447 n n O3X HOP3 NAP sing 448 n n # _atom_sites.entry_id 4RG3 _atom_sites.fract_transf_matrix[1][1] 0.017954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 541 FAD FAD . C 3 NAP A 1 602 542 NAP NAP . D 4 ECE A 1 603 543 ECE LIG . E 5 BCN A 1 604 544 BCN BCN . F 6 HOH A 1 701 1 HOH HOH . F 6 HOH A 2 702 2 HOH HOH . F 6 HOH A 3 703 3 HOH HOH . F 6 HOH A 4 704 4 HOH HOH . F 6 HOH A 5 705 5 HOH HOH . F 6 HOH A 6 706 6 HOH HOH . F 6 HOH A 7 707 7 HOH HOH . F 6 HOH A 8 708 8 HOH HOH . F 6 HOH A 9 709 9 HOH HOH . F 6 HOH A 10 710 10 HOH HOH . F 6 HOH A 11 711 11 HOH HOH . F 6 HOH A 12 712 12 HOH HOH . F 6 HOH A 13 713 13 HOH HOH . F 6 HOH A 14 714 14 HOH HOH . F 6 HOH A 15 715 15 HOH HOH . F 6 HOH A 16 716 16 HOH HOH . F 6 HOH A 17 717 17 HOH HOH . F 6 HOH A 18 718 18 HOH HOH . F 6 HOH A 19 719 19 HOH HOH . F 6 HOH A 20 720 20 HOH HOH . F 6 HOH A 21 721 21 HOH HOH . F 6 HOH A 22 722 22 HOH HOH . F 6 HOH A 23 723 23 HOH HOH . F 6 HOH A 24 724 24 HOH HOH . F 6 HOH A 25 725 25 HOH HOH . F 6 HOH A 26 726 26 HOH HOH . F 6 HOH A 27 727 27 HOH HOH . F 6 HOH A 28 728 28 HOH HOH . F 6 HOH A 29 729 29 HOH HOH . F 6 HOH A 30 730 30 HOH HOH . F 6 HOH A 31 731 31 HOH HOH . F 6 HOH A 32 732 32 HOH HOH . F 6 HOH A 33 733 33 HOH HOH . F 6 HOH A 34 734 34 HOH HOH . F 6 HOH A 35 735 35 HOH HOH . F 6 HOH A 36 736 36 HOH HOH . F 6 HOH A 37 737 37 HOH HOH . F 6 HOH A 38 738 38 HOH HOH . F 6 HOH A 39 739 39 HOH HOH . F 6 HOH A 40 740 40 HOH HOH . F 6 HOH A 41 741 41 HOH HOH . F 6 HOH A 42 742 42 HOH HOH . F 6 HOH A 43 743 43 HOH HOH . F 6 HOH A 44 744 44 HOH HOH . F 6 HOH A 45 745 45 HOH HOH . F 6 HOH A 46 746 46 HOH HOH . F 6 HOH A 47 747 47 HOH HOH . F 6 HOH A 48 748 48 HOH HOH . F 6 HOH A 49 749 49 HOH HOH . F 6 HOH A 50 750 50 HOH HOH . F 6 HOH A 51 751 51 HOH HOH . F 6 HOH A 52 752 52 HOH HOH . F 6 HOH A 53 753 53 HOH HOH . F 6 HOH A 54 754 54 HOH HOH . F 6 HOH A 55 755 55 HOH HOH . F 6 HOH A 56 756 56 HOH HOH . F 6 HOH A 57 757 57 HOH HOH . F 6 HOH A 58 758 58 HOH HOH . F 6 HOH A 59 759 59 HOH HOH . F 6 HOH A 60 760 60 HOH HOH . F 6 HOH A 61 761 61 HOH HOH . F 6 HOH A 62 762 62 HOH HOH . F 6 HOH A 63 763 63 HOH HOH . F 6 HOH A 64 764 64 HOH HOH . F 6 HOH A 65 765 67 HOH HOH . F 6 HOH A 66 766 68 HOH HOH . F 6 HOH A 67 767 69 HOH HOH . F 6 HOH A 68 768 70 HOH HOH . F 6 HOH A 69 769 71 HOH HOH . F 6 HOH A 70 770 72 HOH HOH . F 6 HOH A 71 771 73 HOH HOH . F 6 HOH A 72 772 74 HOH HOH . F 6 HOH A 73 773 75 HOH HOH . F 6 HOH A 74 774 76 HOH HOH . F 6 HOH A 75 775 77 HOH HOH . F 6 HOH A 76 776 78 HOH HOH . F 6 HOH A 77 777 79 HOH HOH . F 6 HOH A 78 778 80 HOH HOH . F 6 HOH A 79 779 81 HOH HOH . F 6 HOH A 80 780 82 HOH HOH . F 6 HOH A 81 781 83 HOH HOH . F 6 HOH A 82 782 84 HOH HOH . F 6 HOH A 83 783 85 HOH HOH . F 6 HOH A 84 784 86 HOH HOH . F 6 HOH A 85 785 87 HOH HOH . F 6 HOH A 86 786 88 HOH HOH . F 6 HOH A 87 787 89 HOH HOH . F 6 HOH A 88 788 90 HOH HOH . F 6 HOH A 89 789 92 HOH HOH . F 6 HOH A 90 790 93 HOH HOH . F 6 HOH A 91 791 94 HOH HOH . F 6 HOH A 92 792 95 HOH HOH . F 6 HOH A 93 793 96 HOH HOH . F 6 HOH A 94 794 98 HOH HOH . F 6 HOH A 95 795 99 HOH HOH . F 6 HOH A 96 796 100 HOH HOH . F 6 HOH A 97 797 101 HOH HOH . F 6 HOH A 98 798 103 HOH HOH . F 6 HOH A 99 799 104 HOH HOH . F 6 HOH A 100 800 105 HOH HOH . F 6 HOH A 101 801 106 HOH HOH . F 6 HOH A 102 802 107 HOH HOH . F 6 HOH A 103 803 108 HOH HOH . F 6 HOH A 104 804 109 HOH HOH . F 6 HOH A 105 805 110 HOH HOH . F 6 HOH A 106 806 111 HOH HOH . F 6 HOH A 107 807 112 HOH HOH . F 6 HOH A 108 808 113 HOH HOH . F 6 HOH A 109 809 114 HOH HOH . F 6 HOH A 110 810 116 HOH HOH . F 6 HOH A 111 811 117 HOH HOH . F 6 HOH A 112 812 119 HOH HOH . F 6 HOH A 113 813 120 HOH HOH . F 6 HOH A 114 814 121 HOH HOH . F 6 HOH A 115 815 122 HOH HOH . F 6 HOH A 116 816 124 HOH HOH . F 6 HOH A 117 817 127 HOH HOH . F 6 HOH A 118 818 129 HOH HOH . F 6 HOH A 119 819 131 HOH HOH . F 6 HOH A 120 820 132 HOH HOH . F 6 HOH A 121 821 133 HOH HOH . F 6 HOH A 122 822 134 HOH HOH . F 6 HOH A 123 823 135 HOH HOH . F 6 HOH A 124 824 136 HOH HOH . F 6 HOH A 125 825 137 HOH HOH . F 6 HOH A 126 826 138 HOH HOH . F 6 HOH A 127 827 139 HOH HOH . F 6 HOH A 128 828 140 HOH HOH . F 6 HOH A 129 829 141 HOH HOH . F 6 HOH A 130 830 142 HOH HOH . F 6 HOH A 131 831 145 HOH HOH . F 6 HOH A 132 832 146 HOH HOH . F 6 HOH A 133 833 148 HOH HOH . F 6 HOH A 134 834 149 HOH HOH . F 6 HOH A 135 835 150 HOH HOH . F 6 HOH A 136 836 151 HOH HOH . F 6 HOH A 137 837 154 HOH HOH . F 6 HOH A 138 838 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 22.351 -3.486 16.645 1 24.47 ? PA NAP 602 A 1 HETATM 2 O O1A NAP . . . C 3 21.61 -3.936 17.926 1 23.3 ? O1A NAP 602 A 1 HETATM 3 O O2A NAP . . . C 3 23.049 -2.215 16.556 1 24.56 ? O2A NAP 602 A 1 HETATM 4 O O5B NAP . . . C 3 23.384 -4.65 16.318 1 22.19 ? O5B NAP 602 A 1 HETATM 5 C C5B NAP . . . C 3 24.37 -4.526 15.253 1 21.89 ? C5B NAP 602 A 1 HETATM 6 C C4B NAP . . . C 3 25.181 -5.815 15.25 1 21.11 ? C4B NAP 602 A 1 HETATM 7 O O4B NAP . . . C 3 26.211 -5.63 14.256 1 22.49 ? O4B NAP 602 A 1 HETATM 8 C C3B NAP . . . C 3 25.901 -6.102 16.564 1 21.12 ? C3B NAP 602 A 1 HETATM 9 O O3B NAP . . . C 3 25.961 -7.541 16.725 1 21.96 ? O3B NAP 602 A 1 HETATM 10 C C2B NAP . . . C 3 27.246 -5.461 16.346 1 21.09 ? C2B NAP 602 A 1 HETATM 11 O O2B NAP . . . C 3 28.298 -6.016 17.131 1 22.52 ? O2B NAP 602 A 1 HETATM 12 C C1B NAP . . . C 3 27.488 -5.83 14.906 1 20.5 ? C1B NAP 602 A 1 HETATM 13 N N9A NAP . . . C 3 28.47 -4.985 14.256 1 23.74 ? N9A NAP 602 A 1 HETATM 14 C C8A NAP . . . C 3 28.359 -3.614 14.08 1 25.31 ? C8A NAP 602 A 1 HETATM 15 N N7A NAP . . . C 3 29.41 -3.179 13.377 1 24.52 ? N7A NAP 602 A 1 HETATM 16 C C5A NAP . . . C 3 30.162 -4.254 13.083 1 22.91 ? C5A NAP 602 A 1 HETATM 17 C C6A NAP . . . C 3 31.441 -4.489 12.419 1 28.38 ? C6A NAP 602 A 1 HETATM 18 N N6A NAP . . . C 3 32.075 -3.449 11.881 1 31.08 ? N6A NAP 602 A 1 HETATM 19 N N1A NAP . . . C 3 31.923 -5.749 12.316 1 24.12 ? N1A NAP 602 A 1 HETATM 20 C C2A NAP . . . C 3 31.286 -6.781 12.857 1 24.37 ? C2A NAP 602 A 1 HETATM 21 N N3A NAP . . . C 3 30.108 -6.63 13.532 1 23.98 ? N3A NAP 602 A 1 HETATM 22 C C4A NAP . . . C 3 29.54 -5.42 13.649 1 21.45 ? C4A NAP 602 A 1 HETATM 23 O O3 NAP . . . C 3 21.364 -3.375 15.388 1 22.42 ? O3 NAP 602 A 1 HETATM 24 P PN NAP . . . C 3 19.993 -4.219 15.022 1 22.43 ? PN NAP 602 A 1 HETATM 25 O O1N NAP . . . C 3 20.2 -5.656 15.324 1 22.21 ? O1N NAP 602 A 1 HETATM 26 O O2N NAP . . . C 3 19.716 -3.762 13.615 1 20.45 ? O2N NAP 602 A 1 HETATM 27 O O5D NAP . . . C 3 19.013 -3.554 16.09 1 25.34 ? O5D NAP 602 A 1 HETATM 28 C C5D NAP . . . C 3 18.899 -2.156 16.357 1 28.18 ? C5D NAP 602 A 1 HETATM 29 C C4D NAP . . . C 3 17.54 -1.933 17.073 1 27.82 ? C4D NAP 602 A 1 HETATM 30 O O4D NAP . . . C 3 16.415 -2.081 16.144 1 27.88 ? O4D NAP 602 A 1 HETATM 31 C C3D NAP . . . C 3 17.239 -3.019 18.135 1 29.38 ? C3D NAP 602 A 1 HETATM 32 O O3D NAP . . . C 3 17.967 -2.958 19.417 1 29.49 ? O3D NAP 602 A 1 HETATM 33 C C2D NAP . . . C 3 15.736 -2.874 18.245 1 28.49 ? C2D NAP 602 A 1 HETATM 34 O O2D NAP . . . C 3 15.544 -1.72 19.015 1 30.2 ? O2D NAP 602 A 1 HETATM 35 C C1D NAP . . . C 3 15.273 -2.638 16.802 1 27.67 ? C1D NAP 602 A 1 HETATM 36 N N1N NAP . . . C 3 14.895 -3.929 16.211 1 29.43 ? N1N NAP 602 A 1 HETATM 37 C C2N NAP . . . C 3 13.925 -4.645 16.787 1 29.92 ? C2N NAP 602 A 1 HETATM 38 C C3N NAP . . . C 3 13.561 -5.913 16.294 1 32.55 ? C3N NAP 602 A 1 HETATM 39 C C7N NAP . . . C 3 12.428 -6.668 16.957 1 37.83 ? C7N NAP 602 A 1 HETATM 40 O O7N NAP . . . C 3 12.444 -7.893 17.207 1 42.39 ? O7N NAP 602 A 1 HETATM 41 N N7N NAP . . . C 3 11.379 -5.921 17.293 1 35.68 ? N7N NAP 602 A 1 HETATM 42 C C4N NAP . . . C 3 14.232 -6.447 15.212 1 27.9 ? C4N NAP 602 A 1 HETATM 43 C C5N NAP . . . C 3 15.243 -5.68 14.617 1 26.64 ? C5N NAP 602 A 1 HETATM 44 C C6N NAP . . . C 3 15.558 -4.432 15.145 1 26.17 ? C6N NAP 602 A 1 HETATM 45 P P2B NAP . . . C 3 28.667 -5.355 18.593 1 25.83 ? P2B NAP 602 A 1 HETATM 46 O O1X NAP . . . C 3 27.5 -5.636 19.488 1 26.05 ? O1X NAP 602 A 1 HETATM 47 O O2X NAP . . . C 3 29.939 -6.132 18.823 1 24.24 ? O2X NAP 602 A 1 HETATM 48 O O3X NAP . . . C 3 28.826 -3.943 18.256 1 24.46 ? O3X NAP 602 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #