data_4RG3
#
_model_server_result.job_id            we8d5idiUOsbKme19_ydTg 
_model_server_result.datetime_utc      '2025-07-04 17:01:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rg3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    4RG3 
#
_exptl.entry_id    4RG3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.142 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Caprolactone 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RG3 
_cell.length_a            55.698 
_cell.length_b            67.06 
_cell.length_c            131.641 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RG3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H10 O2' 
_chem_comp.formula_weight    114.142 
_chem_comp.id                ECE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Caprolactone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Oxepan-2-one;Epsilon-Caprolactone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C1 ECE doub 106 n n 
C2 C1 ECE sing 107 n n 
C2 C3 ECE sing 108 n n 
C1 O7 ECE sing 109 n n 
C3 C4 ECE sing 110 n n 
O7 C6 ECE sing 111 n n 
C4 C5 ECE sing 112 n n 
C6 C5 ECE sing 113 n n 
C4 H1 ECE sing 114 n n 
C4 H2 ECE sing 115 n n 
C5 H3 ECE sing 116 n n 
C5 H4 ECE sing 117 n n 
C6 H5 ECE sing 118 n n 
C6 H6 ECE sing 119 n n 
C2 H7 ECE sing 120 n n 
C2 H8 ECE sing 121 n n 
C3 H9 ECE sing 122 n n 
C3 H10 ECE sing 123 n n 
#
_atom_sites.entry_id                     4RG3 
_atom_sites.fract_transf_matrix[1][1]    0.017954 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007596 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 601 541 FAD FAD . 
C 3 NAP A 1 602 542 NAP NAP . 
D 4 ECE A 1 603 543 ECE LIG . 
E 5 BCN A 1 604 544 BCN BCN . 
F 6 HOH A 1 701 1 HOH HOH . 
F 6 HOH A 2 702 2 HOH HOH . 
F 6 HOH A 3 703 3 HOH HOH . 
F 6 HOH A 4 704 4 HOH HOH . 
F 6 HOH A 5 705 5 HOH HOH . 
F 6 HOH A 6 706 6 HOH HOH . 
F 6 HOH A 7 707 7 HOH HOH . 
F 6 HOH A 8 708 8 HOH HOH . 
F 6 HOH A 9 709 9 HOH HOH . 
F 6 HOH A 10 710 10 HOH HOH . 
F 6 HOH A 11 711 11 HOH HOH . 
F 6 HOH A 12 712 12 HOH HOH . 
F 6 HOH A 13 713 13 HOH HOH . 
F 6 HOH A 14 714 14 HOH HOH . 
F 6 HOH A 15 715 15 HOH HOH . 
F 6 HOH A 16 716 16 HOH HOH . 
F 6 HOH A 17 717 17 HOH HOH . 
F 6 HOH A 18 718 18 HOH HOH . 
F 6 HOH A 19 719 19 HOH HOH . 
F 6 HOH A 20 720 20 HOH HOH . 
F 6 HOH A 21 721 21 HOH HOH . 
F 6 HOH A 22 722 22 HOH HOH . 
F 6 HOH A 23 723 23 HOH HOH . 
F 6 HOH A 24 724 24 HOH HOH . 
F 6 HOH A 25 725 25 HOH HOH . 
F 6 HOH A 26 726 26 HOH HOH . 
F 6 HOH A 27 727 27 HOH HOH . 
F 6 HOH A 28 728 28 HOH HOH . 
F 6 HOH A 29 729 29 HOH HOH . 
F 6 HOH A 30 730 30 HOH HOH . 
F 6 HOH A 31 731 31 HOH HOH . 
F 6 HOH A 32 732 32 HOH HOH . 
F 6 HOH A 33 733 33 HOH HOH . 
F 6 HOH A 34 734 34 HOH HOH . 
F 6 HOH A 35 735 35 HOH HOH . 
F 6 HOH A 36 736 36 HOH HOH . 
F 6 HOH A 37 737 37 HOH HOH . 
F 6 HOH A 38 738 38 HOH HOH . 
F 6 HOH A 39 739 39 HOH HOH . 
F 6 HOH A 40 740 40 HOH HOH . 
F 6 HOH A 41 741 41 HOH HOH . 
F 6 HOH A 42 742 42 HOH HOH . 
F 6 HOH A 43 743 43 HOH HOH . 
F 6 HOH A 44 744 44 HOH HOH . 
F 6 HOH A 45 745 45 HOH HOH . 
F 6 HOH A 46 746 46 HOH HOH . 
F 6 HOH A 47 747 47 HOH HOH . 
F 6 HOH A 48 748 48 HOH HOH . 
F 6 HOH A 49 749 49 HOH HOH . 
F 6 HOH A 50 750 50 HOH HOH . 
F 6 HOH A 51 751 51 HOH HOH . 
F 6 HOH A 52 752 52 HOH HOH . 
F 6 HOH A 53 753 53 HOH HOH . 
F 6 HOH A 54 754 54 HOH HOH . 
F 6 HOH A 55 755 55 HOH HOH . 
F 6 HOH A 56 756 56 HOH HOH . 
F 6 HOH A 57 757 57 HOH HOH . 
F 6 HOH A 58 758 58 HOH HOH . 
F 6 HOH A 59 759 59 HOH HOH . 
F 6 HOH A 60 760 60 HOH HOH . 
F 6 HOH A 61 761 61 HOH HOH . 
F 6 HOH A 62 762 62 HOH HOH . 
F 6 HOH A 63 763 63 HOH HOH . 
F 6 HOH A 64 764 64 HOH HOH . 
F 6 HOH A 65 765 67 HOH HOH . 
F 6 HOH A 66 766 68 HOH HOH . 
F 6 HOH A 67 767 69 HOH HOH . 
F 6 HOH A 68 768 70 HOH HOH . 
F 6 HOH A 69 769 71 HOH HOH . 
F 6 HOH A 70 770 72 HOH HOH . 
F 6 HOH A 71 771 73 HOH HOH . 
F 6 HOH A 72 772 74 HOH HOH . 
F 6 HOH A 73 773 75 HOH HOH . 
F 6 HOH A 74 774 76 HOH HOH . 
F 6 HOH A 75 775 77 HOH HOH . 
F 6 HOH A 76 776 78 HOH HOH . 
F 6 HOH A 77 777 79 HOH HOH . 
F 6 HOH A 78 778 80 HOH HOH . 
F 6 HOH A 79 779 81 HOH HOH . 
F 6 HOH A 80 780 82 HOH HOH . 
F 6 HOH A 81 781 83 HOH HOH . 
F 6 HOH A 82 782 84 HOH HOH . 
F 6 HOH A 83 783 85 HOH HOH . 
F 6 HOH A 84 784 86 HOH HOH . 
F 6 HOH A 85 785 87 HOH HOH . 
F 6 HOH A 86 786 88 HOH HOH . 
F 6 HOH A 87 787 89 HOH HOH . 
F 6 HOH A 88 788 90 HOH HOH . 
F 6 HOH A 89 789 92 HOH HOH . 
F 6 HOH A 90 790 93 HOH HOH . 
F 6 HOH A 91 791 94 HOH HOH . 
F 6 HOH A 92 792 95 HOH HOH . 
F 6 HOH A 93 793 96 HOH HOH . 
F 6 HOH A 94 794 98 HOH HOH . 
F 6 HOH A 95 795 99 HOH HOH . 
F 6 HOH A 96 796 100 HOH HOH . 
F 6 HOH A 97 797 101 HOH HOH . 
F 6 HOH A 98 798 103 HOH HOH . 
F 6 HOH A 99 799 104 HOH HOH . 
F 6 HOH A 100 800 105 HOH HOH . 
F 6 HOH A 101 801 106 HOH HOH . 
F 6 HOH A 102 802 107 HOH HOH . 
F 6 HOH A 103 803 108 HOH HOH . 
F 6 HOH A 104 804 109 HOH HOH . 
F 6 HOH A 105 805 110 HOH HOH . 
F 6 HOH A 106 806 111 HOH HOH . 
F 6 HOH A 107 807 112 HOH HOH . 
F 6 HOH A 108 808 113 HOH HOH . 
F 6 HOH A 109 809 114 HOH HOH . 
F 6 HOH A 110 810 116 HOH HOH . 
F 6 HOH A 111 811 117 HOH HOH . 
F 6 HOH A 112 812 119 HOH HOH . 
F 6 HOH A 113 813 120 HOH HOH . 
F 6 HOH A 114 814 121 HOH HOH . 
F 6 HOH A 115 815 122 HOH HOH . 
F 6 HOH A 116 816 124 HOH HOH . 
F 6 HOH A 117 817 127 HOH HOH . 
F 6 HOH A 118 818 129 HOH HOH . 
F 6 HOH A 119 819 131 HOH HOH . 
F 6 HOH A 120 820 132 HOH HOH . 
F 6 HOH A 121 821 133 HOH HOH . 
F 6 HOH A 122 822 134 HOH HOH . 
F 6 HOH A 123 823 135 HOH HOH . 
F 6 HOH A 124 824 136 HOH HOH . 
F 6 HOH A 125 825 137 HOH HOH . 
F 6 HOH A 126 826 138 HOH HOH . 
F 6 HOH A 127 827 139 HOH HOH . 
F 6 HOH A 128 828 140 HOH HOH . 
F 6 HOH A 129 829 141 HOH HOH . 
F 6 HOH A 130 830 142 HOH HOH . 
F 6 HOH A 131 831 145 HOH HOH . 
F 6 HOH A 132 832 146 HOH HOH . 
F 6 HOH A 133 833 148 HOH HOH . 
F 6 HOH A 134 834 149 HOH HOH . 
F 6 HOH A 135 835 150 HOH HOH . 
F 6 HOH A 136 836 151 HOH HOH . 
F 6 HOH A 137 837 154 HOH HOH . 
F 6 HOH A 138 838 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 ECE . . . D 4 13.116 1.757 21.681 0.6 38.82 ? C4 ECE 603 A 1 
HETATM 2 C C5 ECE . . . D 4 12.046 0.93 22.389 0.6 39.66 ? C5 ECE 603 A 1 
HETATM 3 C C6 ECE . . . D 4 12.293 -0.581 22.315 0.6 38.67 ? C6 ECE 603 A 1 
HETATM 4 C C2 ECE . . . D 4 12.847 0.296 19.561 0.6 37.22 ? C2 ECE 603 A 1 
HETATM 5 C C3 ECE . . . D 4 13.819 0.955 20.56 0.6 38.84 ? C3 ECE 603 A 1 
HETATM 6 O O7 ECE . . . D 4 11.529 -1.177 21.202 0.6 41.45 ? O7 ECE 603 A 1 
HETATM 7 C C1 ECE . . . D 4 12.276 -1.048 20.054 0.6 38.31 ? C1 ECE 603 A 1 
HETATM 8 O O ECE . . . D 4 12.495 -2.067 19.405 0.6 32.5 ? O ECE 603 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#