data_4RG4 # _model_server_result.job_id 0fBwDkYCsxxjj1iSeL6nWA _model_server_result.datetime_utc '2024-11-13 18:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4RG4 # _exptl.entry_id 4RG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RG4 _cell.length_a 55.145 _cell.length_b 67.028 _cell.length_c 133.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 48 A LYS 40 1_555 E C1 PTD . A PTD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 doub covale ? covale2 A NZ LYS 182 A LYS 174 1_555 F C1 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.253 doub covale ? covale3 A NH1 ARG 187 A ARG 179 1_555 F C5 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 doub covale ? covale4 A CZ ARG 187 A ARG 179 1_555 F C2 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 doub # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 101 n n PA O2A FAD sing 102 n n PA O5B FAD sing 103 n n PA O3P FAD sing 104 n n O2A HOA2 FAD sing 105 n n O5B C5B FAD sing 106 n n C5B C4B FAD sing 107 n n C5B H51A FAD sing 108 n n C5B H52A FAD sing 109 n n C4B O4B FAD sing 110 n n C4B C3B FAD sing 111 n n C4B H4B FAD sing 112 n n O4B C1B FAD sing 113 n n C3B O3B FAD sing 114 n n C3B C2B FAD sing 115 n n C3B H3B FAD sing 116 n n O3B HO3A FAD sing 117 n n C2B O2B FAD sing 118 n n C2B C1B FAD sing 119 n n C2B H2B FAD sing 120 n n O2B HO2A FAD sing 121 n n C1B N9A FAD sing 122 n n C1B H1B FAD sing 123 n n N9A C8A FAD sing 124 n y N9A C4A FAD sing 125 n y C8A N7A FAD doub 126 n y C8A H8A FAD sing 127 n n N7A C5A FAD sing 128 n y C5A C6A FAD sing 129 n y C5A C4A FAD doub 130 n y C6A N6A FAD sing 131 n n C6A N1A FAD doub 132 n y N6A H61A FAD sing 133 n n N6A H62A FAD sing 134 n n N1A C2A FAD sing 135 n y C2A N3A FAD doub 136 n y C2A H2A FAD sing 137 n n N3A C4A FAD sing 138 n y N1 C2 FAD sing 139 n n N1 C10 FAD doub 140 n n C2 O2 FAD doub 141 n n C2 N3 FAD sing 142 n n N3 C4 FAD sing 143 n n N3 HN3 FAD sing 144 n n C4 O4 FAD doub 145 n n C4 C4X FAD sing 146 n n C4X N5 FAD doub 147 n n C4X C10 FAD sing 148 n n N5 C5X FAD sing 149 n n C5X C6 FAD doub 150 n y C5X C9A FAD sing 151 n y C6 C7 FAD sing 152 n y C6 H6 FAD sing 153 n n C7 C7M FAD sing 154 n n C7 C8 FAD doub 155 n y C7M HM71 FAD sing 156 n n C7M HM72 FAD sing 157 n n C7M HM73 FAD sing 158 n n C8 C8M FAD sing 159 n n C8 C9 FAD sing 160 n y C8M HM81 FAD sing 161 n n C8M HM82 FAD sing 162 n n C8M HM83 FAD sing 163 n n C9 C9A FAD doub 164 n y C9 H9 FAD sing 165 n n C9A N10 FAD sing 166 n n N10 C10 FAD sing 167 n n N10 C1' FAD sing 168 n n C1' C2' FAD sing 169 n n C1' "H1'1" FAD sing 170 n n C1' "H1'2" FAD sing 171 n n C2' O2' FAD sing 172 n n C2' C3' FAD sing 173 n n C2' H2' FAD sing 174 n n O2' HO2' FAD sing 175 n n C3' O3' FAD sing 176 n n C3' C4' FAD sing 177 n n C3' H3' FAD sing 178 n n O3' HO3' FAD sing 179 n n C4' O4' FAD sing 180 n n C4' C5' FAD sing 181 n n C4' H4' FAD sing 182 n n O4' HO4' FAD sing 183 n n C5' O5' FAD sing 184 n n C5' "H5'1" FAD sing 185 n n C5' "H5'2" FAD sing 186 n n O5' P FAD sing 187 n n P O1P FAD doub 188 n n P O2P FAD sing 189 n n P O3P FAD sing 190 n n O2P HOP2 FAD sing 191 n n # _atom_sites.entry_id 4RG4 _atom_sites.fract_transf_matrix[1][1] 0.018134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 541 FAD FAD . C 3 NAP A 1 602 542 NAP NAP . D 4 ECE A 1 603 543 ECE LIG . E 5 PTD A 1 604 544 PTD PTD . F 5 PTD A 1 605 545 PTD PTD . G 6 HOH A 1 701 1 HOH HOH . G 6 HOH A 2 702 2 HOH HOH . G 6 HOH A 3 703 3 HOH HOH . G 6 HOH A 4 704 4 HOH HOH . G 6 HOH A 5 705 5 HOH HOH . G 6 HOH A 6 706 6 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 8 HOH HOH . G 6 HOH A 9 709 9 HOH HOH . G 6 HOH A 10 710 10 HOH HOH . G 6 HOH A 11 711 11 HOH HOH . G 6 HOH A 12 712 12 HOH HOH . G 6 HOH A 13 713 13 HOH HOH . G 6 HOH A 14 714 14 HOH HOH . G 6 HOH A 15 715 15 HOH HOH . G 6 HOH A 16 716 16 HOH HOH . G 6 HOH A 17 717 17 HOH HOH . G 6 HOH A 18 718 18 HOH HOH . G 6 HOH A 19 719 19 HOH HOH . G 6 HOH A 20 720 20 HOH HOH . G 6 HOH A 21 721 21 HOH HOH . G 6 HOH A 22 722 22 HOH HOH . G 6 HOH A 23 723 23 HOH HOH . G 6 HOH A 24 724 24 HOH HOH . G 6 HOH A 25 725 25 HOH HOH . G 6 HOH A 26 726 26 HOH HOH . G 6 HOH A 27 727 27 HOH HOH . G 6 HOH A 28 728 28 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 30 HOH HOH . G 6 HOH A 31 731 31 HOH HOH . G 6 HOH A 32 732 32 HOH HOH . G 6 HOH A 33 733 33 HOH HOH . G 6 HOH A 34 734 34 HOH HOH . G 6 HOH A 35 735 35 HOH HOH . G 6 HOH A 36 736 36 HOH HOH . G 6 HOH A 37 737 37 HOH HOH . G 6 HOH A 38 738 38 HOH HOH . G 6 HOH A 39 739 39 HOH HOH . G 6 HOH A 40 740 40 HOH HOH . G 6 HOH A 41 741 41 HOH HOH . G 6 HOH A 42 742 42 HOH HOH . G 6 HOH A 43 743 43 HOH HOH . G 6 HOH A 44 744 44 HOH HOH . G 6 HOH A 45 745 45 HOH HOH . G 6 HOH A 46 746 46 HOH HOH . G 6 HOH A 47 747 47 HOH HOH . G 6 HOH A 48 748 48 HOH HOH . G 6 HOH A 49 749 49 HOH HOH . G 6 HOH A 50 750 50 HOH HOH . G 6 HOH A 51 751 51 HOH HOH . G 6 HOH A 52 752 52 HOH HOH . G 6 HOH A 53 753 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 10.329 6.398 11.221 1 27.37 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . B 2 9.385 5.269 11.047 1 28.78 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . B 2 11.796 6.168 11.334 1 26.23 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . B 2 10.036 7.342 9.976 1 28.91 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . B 2 10.923 8.43 9.69 1 29.33 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . B 2 10.918 8.825 8.217 1 28.32 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . B 2 11.65 10.068 8.063 1 29.77 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . B 2 11.597 7.8 7.315 1 29.47 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . B 2 10.656 7.14 6.482 1 31.45 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . B 2 12.601 8.59 6.488 1 30.47 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . B 2 12.572 8.238 5.12 1 32.97 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . B 2 12.136 10.005 6.716 1 30.06 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . B 2 13.153 11.029 6.554 1 28.55 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . B 2 14.207 11.344 7.341 1 30.24 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . B 2 14.892 12.429 6.883 1 26.84 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . B 2 14.203 12.808 5.778 1 28.12 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . B 2 14.295 13.865 4.782 1 29.21 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . B 2 15.298 14.732 4.848 1 32.18 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . B 2 13.355 13.967 3.836 1 31.09 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . B 2 12.341 13.09 3.731 1 30.96 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . B 2 12.176 12.08 4.575 1 28.17 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . B 2 13.065 11.902 5.58 1 29.2 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . B 2 9.85 0.479 18.278 1 27.57 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . B 2 8.996 0.016 19.209 1 27.25 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . B 2 8.563 0.768 20.074 1 24.75 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . B 2 8.566 -1.254 19.252 1 29.57 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . B 2 8.971 -2.178 18.38 1 31 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . B 2 8.53 -3.339 18.46 1 30.94 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . B 2 9.933 -1.775 17.327 1 31.52 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . B 2 10.382 -2.648 16.409 1 32.66 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . B 2 11.233 -2.239 15.456 1 34.54 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . B 2 11.675 -3.157 14.512 1 36.88 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . B 2 12.549 -2.775 13.505 1 37.6 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . B 2 13.069 -3.751 12.472 1 43.06 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . B 2 12.999 -1.396 13.446 1 36.48 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . B 2 13.964 -1.026 12.36 1 40.33 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . B 2 12.57 -0.461 14.385 1 34.81 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . B 2 11.694 -0.828 15.399 1 33 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . B 2 11.234 0.093 16.364 1 30.65 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . B 2 10.33 -0.353 17.326 1 29.46 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . B 2 11.605 1.513 16.36 1 28.81 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . B 2 10.62 2.143 15.351 1 27.88 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . B 2 11.389 2.863 14.382 1 25.91 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . B 2 9.539 3.026 16.027 1 26.4 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . B 2 8.603 2.286 16.84 1 23.54 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . B 2 8.677 3.807 15.042 1 27.07 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . B 2 8.567 3.063 13.824 1 28.7 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . B 2 9.186 5.226 14.795 1 27.21 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . B 2 8.392 5.865 13.787 1 27.44 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . B 2 8.663 7.375 13.321 1 27.1 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . B 2 7.557 7.731 12.382 1 30.64 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . B 2 8.918 8.224 14.569 1 26.13 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . B 2 10.027 7.31 12.492 1 26.42 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #