data_4RG4 # _model_server_result.job_id JhRbArX7IXoZis0dDqiBxg _model_server_result.datetime_utc '2024-11-13 18:51:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4RG4 # _exptl.entry_id 4RG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RG4 _cell.length_a 55.145 _cell.length_b 67.028 _cell.length_c 133.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 48 A LYS 40 1_555 E C1 PTD . A PTD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 doub covale ? covale2 A NZ LYS 182 A LYS 174 1_555 F C1 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.253 doub covale ? covale3 A NH1 ARG 187 A ARG 179 1_555 F C5 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 doub covale ? covale4 A CZ ARG 187 A ARG 179 1_555 F C2 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 doub # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 346 n n PA O2A NAP sing 347 n n PA O5B NAP sing 348 n n PA O3 NAP sing 349 n n O2A HOA2 NAP sing 350 n n O5B C5B NAP sing 351 n n C5B C4B NAP sing 352 n n C5B H51A NAP sing 353 n n C5B H52A NAP sing 354 n n C4B O4B NAP sing 355 n n C4B C3B NAP sing 356 n n C4B H4B NAP sing 357 n n O4B C1B NAP sing 358 n n C3B O3B NAP sing 359 n n C3B C2B NAP sing 360 n n C3B H3B NAP sing 361 n n O3B HO3A NAP sing 362 n n C2B O2B NAP sing 363 n n C2B C1B NAP sing 364 n n C2B H2B NAP sing 365 n n O2B P2B NAP sing 366 n n C1B N9A NAP sing 367 n n C1B H1B NAP sing 368 n n N9A C8A NAP sing 369 n y N9A C4A NAP sing 370 n y C8A N7A NAP doub 371 n y C8A H8A NAP sing 372 n n N7A C5A NAP sing 373 n y C5A C6A NAP sing 374 n y C5A C4A NAP doub 375 n y C6A N6A NAP sing 376 n n C6A N1A NAP doub 377 n y N6A H61A NAP sing 378 n n N6A H62A NAP sing 379 n n N1A C2A NAP sing 380 n y C2A N3A NAP doub 381 n y C2A H2A NAP sing 382 n n N3A C4A NAP sing 383 n y O3 PN NAP sing 384 n n PN O1N NAP doub 385 n n PN O2N NAP sing 386 n n PN O5D NAP sing 387 n n O5D C5D NAP sing 388 n n C5D C4D NAP sing 389 n n C5D H51N NAP sing 390 n n C5D H52N NAP sing 391 n n C4D O4D NAP sing 392 n n C4D C3D NAP sing 393 n n C4D H4D NAP sing 394 n n O4D C1D NAP sing 395 n n C3D O3D NAP sing 396 n n C3D C2D NAP sing 397 n n C3D H3D NAP sing 398 n n O3D HO3N NAP sing 399 n n C2D O2D NAP sing 400 n n C2D C1D NAP sing 401 n n C2D H2D NAP sing 402 n n O2D HO2N NAP sing 403 n n C1D N1N NAP sing 404 n n C1D H1D NAP sing 405 n n N1N C2N NAP sing 406 n y N1N C6N NAP doub 407 n y C2N C3N NAP doub 408 n y C2N H2N NAP sing 409 n n C3N C7N NAP sing 410 n n C3N C4N NAP sing 411 n y C7N O7N NAP doub 412 n n C7N N7N NAP sing 413 n n N7N H71N NAP sing 414 n n N7N H72N NAP sing 415 n n C4N C5N NAP doub 416 n y C4N H4N NAP sing 417 n n C5N C6N NAP sing 418 n y C5N H5N NAP sing 419 n n C6N H6N NAP sing 420 n n P2B O1X NAP doub 421 n n P2B O2X NAP sing 422 n n P2B O3X NAP sing 423 n n O2X HOP2 NAP sing 424 n n O3X HOP3 NAP sing 425 n n # _atom_sites.entry_id 4RG4 _atom_sites.fract_transf_matrix[1][1] 0.018134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 541 FAD FAD . C 3 NAP A 1 602 542 NAP NAP . D 4 ECE A 1 603 543 ECE LIG . E 5 PTD A 1 604 544 PTD PTD . F 5 PTD A 1 605 545 PTD PTD . G 6 HOH A 1 701 1 HOH HOH . G 6 HOH A 2 702 2 HOH HOH . G 6 HOH A 3 703 3 HOH HOH . G 6 HOH A 4 704 4 HOH HOH . G 6 HOH A 5 705 5 HOH HOH . G 6 HOH A 6 706 6 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 8 HOH HOH . G 6 HOH A 9 709 9 HOH HOH . G 6 HOH A 10 710 10 HOH HOH . G 6 HOH A 11 711 11 HOH HOH . G 6 HOH A 12 712 12 HOH HOH . G 6 HOH A 13 713 13 HOH HOH . G 6 HOH A 14 714 14 HOH HOH . G 6 HOH A 15 715 15 HOH HOH . G 6 HOH A 16 716 16 HOH HOH . G 6 HOH A 17 717 17 HOH HOH . G 6 HOH A 18 718 18 HOH HOH . G 6 HOH A 19 719 19 HOH HOH . G 6 HOH A 20 720 20 HOH HOH . G 6 HOH A 21 721 21 HOH HOH . G 6 HOH A 22 722 22 HOH HOH . G 6 HOH A 23 723 23 HOH HOH . G 6 HOH A 24 724 24 HOH HOH . G 6 HOH A 25 725 25 HOH HOH . G 6 HOH A 26 726 26 HOH HOH . G 6 HOH A 27 727 27 HOH HOH . G 6 HOH A 28 728 28 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 30 HOH HOH . G 6 HOH A 31 731 31 HOH HOH . G 6 HOH A 32 732 32 HOH HOH . G 6 HOH A 33 733 33 HOH HOH . G 6 HOH A 34 734 34 HOH HOH . G 6 HOH A 35 735 35 HOH HOH . G 6 HOH A 36 736 36 HOH HOH . G 6 HOH A 37 737 37 HOH HOH . G 6 HOH A 38 738 38 HOH HOH . G 6 HOH A 39 739 39 HOH HOH . G 6 HOH A 40 740 40 HOH HOH . G 6 HOH A 41 741 41 HOH HOH . G 6 HOH A 42 742 42 HOH HOH . G 6 HOH A 43 743 43 HOH HOH . G 6 HOH A 44 744 44 HOH HOH . G 6 HOH A 45 745 45 HOH HOH . G 6 HOH A 46 746 46 HOH HOH . G 6 HOH A 47 747 47 HOH HOH . G 6 HOH A 48 748 48 HOH HOH . G 6 HOH A 49 749 49 HOH HOH . G 6 HOH A 50 750 50 HOH HOH . G 6 HOH A 51 751 51 HOH HOH . G 6 HOH A 52 752 52 HOH HOH . G 6 HOH A 53 753 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 21.987 -2.693 16.251 1 32.41 ? PA NAP 602 A 1 HETATM 2 O O1A NAP . . . C 3 22.741 -1.404 16.086 1 30.4 ? O1A NAP 602 A 1 HETATM 3 O O2A NAP . . . C 3 21.281 -2.909 17.539 1 35.47 ? O2A NAP 602 A 1 HETATM 4 O O5B NAP . . . C 3 22.867 -4.005 16.147 1 30.61 ? O5B NAP 602 A 1 HETATM 5 C C5B NAP . . . C 3 24.157 -3.765 15.579 1 30.67 ? C5B NAP 602 A 1 HETATM 6 C C4B NAP . . . C 3 24.892 -5.076 15.419 1 30.62 ? C4B NAP 602 A 1 HETATM 7 O O4B NAP . . . C 3 25.887 -4.955 14.402 1 30.15 ? O4B NAP 602 A 1 HETATM 8 C C3B NAP . . . C 3 25.588 -5.426 16.726 1 29.11 ? C3B NAP 602 A 1 HETATM 9 O O3B NAP . . . C 3 25.624 -6.833 16.872 1 24.62 ? O3B NAP 602 A 1 HETATM 10 C C2B NAP . . . C 3 26.948 -4.845 16.476 1 29.97 ? C2B NAP 602 A 1 HETATM 11 O O2B NAP . . . C 3 27.962 -5.429 17.27 1 34.57 ? O2B NAP 602 A 1 HETATM 12 C C1B NAP . . . C 3 27.136 -5.197 15.044 1 30.12 ? C1B NAP 602 A 1 HETATM 13 N N9A NAP . . . C 3 28.132 -4.389 14.378 1 29.58 ? N9A NAP 602 A 1 HETATM 14 C C8A NAP . . . C 3 28.033 -3.095 14.159 1 30.68 ? C8A NAP 602 A 1 HETATM 15 N N7A NAP . . . C 3 29.072 -2.648 13.449 1 28.88 ? N7A NAP 602 A 1 HETATM 16 C C5A NAP . . . C 3 29.857 -3.695 13.215 1 33.4 ? C5A NAP 602 A 1 HETATM 17 C C6A NAP . . . C 3 31.156 -3.925 12.536 1 35.98 ? C6A NAP 602 A 1 HETATM 18 N N6A NAP . . . C 3 31.793 -2.893 11.958 1 40.95 ? N6A NAP 602 A 1 HETATM 19 N N1A NAP . . . C 3 31.649 -5.177 12.509 1 34.74 ? N1A NAP 602 A 1 HETATM 20 C C2A NAP . . . C 3 30.982 -6.207 13.081 1 30.55 ? C2A NAP 602 A 1 HETATM 21 N N3A NAP . . . C 3 29.822 -6.054 13.716 1 29.73 ? N3A NAP 602 A 1 HETATM 22 C C4A NAP . . . C 3 29.219 -4.856 13.81 1 30.7 ? C4A NAP 602 A 1 HETATM 23 O O3 NAP . . . C 3 21.119 -2.695 14.916 1 33.86 ? O3 NAP 602 A 1 HETATM 24 P PN NAP . . . C 3 19.732 -3.453 14.638 1 41.94 ? PN NAP 602 A 1 HETATM 25 O O1N NAP . . . C 3 19.788 -4.857 15.223 1 38.3 ? O1N NAP 602 A 1 HETATM 26 O O2N NAP . . . C 3 19.51 -3.187 13.139 1 35.75 ? O2N NAP 602 A 1 HETATM 27 O O5D NAP . . . C 3 18.7 -2.588 15.492 1 38.7 ? O5D NAP 602 A 1 HETATM 28 C C5D NAP . . . C 3 18.618 -1.203 15.187 1 45.75 ? C5D NAP 602 A 1 HETATM 29 C C4D NAP . . . C 3 17.634 -0.541 16.147 1 52.75 ? C4D NAP 602 A 1 HETATM 30 O O4D NAP . . . C 3 16.304 -0.825 15.701 1 51.25 ? O4D NAP 602 A 1 HETATM 31 C C3D NAP . . . C 3 17.807 -1.027 17.595 1 54.62 ? C3D NAP 602 A 1 HETATM 32 O O3D NAP . . . C 3 18.056 0.026 18.555 1 50.68 ? O3D NAP 602 A 1 HETATM 33 C C2D NAP . . . C 3 16.501 -1.735 17.86 1 57.31 ? C2D NAP 602 A 1 HETATM 34 O O2D NAP . . . C 3 15.904 -1.232 19.053 1 71.62 ? O2D NAP 602 A 1 HETATM 35 C C1D NAP . . . C 3 15.544 -1.502 16.693 1 55.94 ? C1D NAP 602 A 1 HETATM 36 N N1N NAP . . . C 3 15.021 -2.82 16.274 1 61.8 ? N1N NAP 602 A 1 HETATM 37 C C2N NAP . . . C 3 14.014 -3.339 16.992 1 63.65 ? C2N NAP 602 A 1 HETATM 38 C C3N NAP . . . C 3 13.479 -4.597 16.701 1 64.22 ? C3N NAP 602 A 1 HETATM 39 C C7N NAP . . . C 3 12.374 -5.17 17.545 1 67.25 ? C7N NAP 602 A 1 HETATM 40 O O7N NAP . . . C 3 11.733 -6.135 17.146 1 62.84 ? O7N NAP 602 A 1 HETATM 41 N N7N NAP . . . C 3 12.134 -4.658 18.752 1 63.9 ? N7N NAP 602 A 1 HETATM 42 C C4N NAP . . . C 3 13.996 -5.328 15.635 1 59.29 ? C4N NAP 602 A 1 HETATM 43 C C5N NAP . . . C 3 15.041 -4.778 14.904 1 59.51 ? C5N NAP 602 A 1 HETATM 44 C C6N NAP . . . C 3 15.543 -3.518 15.24 1 61.33 ? C6N NAP 602 A 1 HETATM 45 P P2B NAP . . . C 3 28.4 -4.547 18.569 1 34.71 ? P2B NAP 602 A 1 HETATM 46 O O1X NAP . . . C 3 27.091 -4.519 19.311 1 32.58 ? O1X NAP 602 A 1 HETATM 47 O O2X NAP . . . C 3 29.538 -5.297 19.227 1 32.54 ? O2X NAP 602 A 1 HETATM 48 O O3X NAP . . . C 3 28.817 -3.21 18.041 1 32.8 ? O3X NAP 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 48 #