data_4RG4 # _model_server_result.job_id ewmsZc1pWGs1eHC4STE5DQ _model_server_result.datetime_utc '2024-11-13 18:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 4RG4 # _exptl.entry_id 4RG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 100.116 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANEDIAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RG4 _cell.length_a 55.145 _cell.length_b 67.028 _cell.length_c 133.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 48 A LYS 40 1_555 E C1 PTD . A PTD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 doub covale ? covale2 A NZ LYS 182 A LYS 174 1_555 F C1 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.253 doub covale ? covale3 A NH1 ARG 187 A ARG 179 1_555 F C5 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 doub covale ? covale4 A CZ ARG 187 A ARG 179 1_555 F C2 PTD . A PTD 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 doub # _chem_comp.formula 'C5 H8 O2' _chem_comp.formula_weight 100.116 _chem_comp.id PTD _chem_comp.mon_nstd_flag . _chem_comp.name PENTANEDIAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PTD sing 466 n n C1 O1 PTD doub 467 n n C1 HC1 PTD sing 468 n n C2 C3 PTD sing 469 n n C2 HC21 PTD sing 470 n n C2 HC22 PTD sing 471 n n C3 C4 PTD sing 472 n n C3 HC31 PTD sing 473 n n C3 HC32 PTD sing 474 n n C4 C5 PTD sing 475 n n C4 HC41 PTD sing 476 n n C4 HC42 PTD sing 477 n n C5 O5 PTD doub 478 n n C5 HC5 PTD sing 479 n n # _atom_sites.entry_id 4RG4 _atom_sites.fract_transf_matrix[1][1] 0.018134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 541 FAD FAD . C 3 NAP A 1 602 542 NAP NAP . D 4 ECE A 1 603 543 ECE LIG . E 5 PTD A 1 604 544 PTD PTD . F 5 PTD A 1 605 545 PTD PTD . G 6 HOH A 1 701 1 HOH HOH . G 6 HOH A 2 702 2 HOH HOH . G 6 HOH A 3 703 3 HOH HOH . G 6 HOH A 4 704 4 HOH HOH . G 6 HOH A 5 705 5 HOH HOH . G 6 HOH A 6 706 6 HOH HOH . G 6 HOH A 7 707 7 HOH HOH . G 6 HOH A 8 708 8 HOH HOH . G 6 HOH A 9 709 9 HOH HOH . G 6 HOH A 10 710 10 HOH HOH . G 6 HOH A 11 711 11 HOH HOH . G 6 HOH A 12 712 12 HOH HOH . G 6 HOH A 13 713 13 HOH HOH . G 6 HOH A 14 714 14 HOH HOH . G 6 HOH A 15 715 15 HOH HOH . G 6 HOH A 16 716 16 HOH HOH . G 6 HOH A 17 717 17 HOH HOH . G 6 HOH A 18 718 18 HOH HOH . G 6 HOH A 19 719 19 HOH HOH . G 6 HOH A 20 720 20 HOH HOH . G 6 HOH A 21 721 21 HOH HOH . G 6 HOH A 22 722 22 HOH HOH . G 6 HOH A 23 723 23 HOH HOH . G 6 HOH A 24 724 24 HOH HOH . G 6 HOH A 25 725 25 HOH HOH . G 6 HOH A 26 726 26 HOH HOH . G 6 HOH A 27 727 27 HOH HOH . G 6 HOH A 28 728 28 HOH HOH . G 6 HOH A 29 729 29 HOH HOH . G 6 HOH A 30 730 30 HOH HOH . G 6 HOH A 31 731 31 HOH HOH . G 6 HOH A 32 732 32 HOH HOH . G 6 HOH A 33 733 33 HOH HOH . G 6 HOH A 34 734 34 HOH HOH . G 6 HOH A 35 735 35 HOH HOH . G 6 HOH A 36 736 36 HOH HOH . G 6 HOH A 37 737 37 HOH HOH . G 6 HOH A 38 738 38 HOH HOH . G 6 HOH A 39 739 39 HOH HOH . G 6 HOH A 40 740 40 HOH HOH . G 6 HOH A 41 741 41 HOH HOH . G 6 HOH A 42 742 42 HOH HOH . G 6 HOH A 43 743 43 HOH HOH . G 6 HOH A 44 744 44 HOH HOH . G 6 HOH A 45 745 45 HOH HOH . G 6 HOH A 46 746 46 HOH HOH . G 6 HOH A 47 747 47 HOH HOH . G 6 HOH A 48 748 48 HOH HOH . G 6 HOH A 49 749 49 HOH HOH . G 6 HOH A 50 750 50 HOH HOH . G 6 HOH A 51 751 51 HOH HOH . G 6 HOH A 52 752 52 HOH HOH . G 6 HOH A 53 753 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTD . . . E 5 17.255 8.473 5.729 1 57.86 ? C1 PTD 604 A 1 HETATM 2 C C2 PTD . . . E 5 16.346 7.374 6.272 1 60.86 ? C2 PTD 604 A 1 HETATM 3 C C3 PTD . . . E 5 16.932 5.974 6.071 1 63.55 ? C3 PTD 604 A 1 HETATM 4 C C4 PTD . . . E 5 17.031 5.576 4.589 1 63.52 ? C4 PTD 604 A 1 HETATM 5 C C5 PTD . . . E 5 17.216 4.07 4.431 1 57.19 ? C5 PTD 604 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #