data_4RGU
#
_model_server_result.job_id            qEt8hnaoOUeO3I_Vb8ejww 
_model_server_result.datetime_utc      '2024-12-01 05:29:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    4RGU 
#
_exptl.entry_id    4RGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RGU 
_cell.length_a            63.668 
_cell.length_b            82.812 
_cell.length_c            63.165 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
? 4 H N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 22 A TYR 19 1_555 A N MSE 23 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 23 A MSE 20 1_555 A N ILE 24 A ILE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C GLN 127 A GLN 124 1_555 A N MSE 128 A MSE 125 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C GLN 127 A GLN 124 1_555 A N MSE 128 A MSE 125 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C MSE 128 A MSE 125 1_555 A N LEU 129 A LEU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C LEU 146 A LEU 143 1_555 A N MSE 147 A MSE 144 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C LEU 146 A LEU 143 1_555 A N MSE 147 A MSE 144 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 A C MSE 147 A MSE 144 1_555 A N VAL 148 A VAL 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C TYR 22 B TYR 19 1_555 B N MSE 23 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 B C MSE 23 B MSE 20 1_555 B N ILE 24 B ILE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 B C GLN 127 B GLN 124 1_555 B N MSE 128 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 B C MSE 128 B MSE 125 1_555 B N LEU 129 B LEU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 B C LEU 146 B LEU 143 1_555 B N MSE 147 B MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 B C MSE 147 B MSE 144 1_555 B N VAL 148 B VAL 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 B O ASP 95 B ASP 92 1_555 J NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? 
metalc ? metalc2 B O THR 97 B THR 94 1_555 J NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? 
metalc ? metalc3 B O ARG 100 B ARG 97 1_555 J NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc4 J NA NA . B NA 203 1_555 M O HOH . B HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     4RGU 
_atom_sites.fract_transf_matrix[1][1]    0.015706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015832 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FER A 1 201 171 FER FLA . 
D 3 CL A 1 202 172 CL CL . 
E 4 GOL A 1 203 173 GOL GOL . 
F 2 FER A 1 204 171 FER FLA . 
G 4 GOL A 1 205 175 GOL GOL . 
H 4 GOL B 1 201 174 GOL GOL . 
I 3 CL B 1 202 172 CL CL . 
J 5 NA B 1 203 173 NA NA . 
K 4 GOL B 1 204 174 GOL GOL . 
L 6 HOH A 1 301 3 HOH HOH . 
L 6 HOH A 2 302 4 HOH HOH . 
L 6 HOH A 3 303 7 HOH HOH . 
L 6 HOH A 4 304 8 HOH HOH . 
L 6 HOH A 5 305 11 HOH HOH . 
L 6 HOH A 6 306 18 HOH HOH . 
L 6 HOH A 7 307 20 HOH HOH . 
L 6 HOH A 8 308 23 HOH HOH . 
L 6 HOH A 9 309 25 HOH HOH . 
L 6 HOH A 10 310 28 HOH HOH . 
L 6 HOH A 11 311 33 HOH HOH . 
L 6 HOH A 12 312 35 HOH HOH . 
L 6 HOH A 13 313 44 HOH HOH . 
L 6 HOH A 14 314 46 HOH HOH . 
L 6 HOH A 15 315 48 HOH HOH . 
L 6 HOH A 16 316 51 HOH HOH . 
L 6 HOH A 17 317 52 HOH HOH . 
L 6 HOH A 18 318 53 HOH HOH . 
L 6 HOH A 19 319 54 HOH HOH . 
L 6 HOH A 20 320 55 HOH HOH . 
L 6 HOH A 21 321 58 HOH HOH . 
L 6 HOH A 22 322 59 HOH HOH . 
L 6 HOH A 23 323 62 HOH HOH . 
L 6 HOH A 24 324 63 HOH HOH . 
L 6 HOH A 25 325 64 HOH HOH . 
L 6 HOH A 26 326 66 HOH HOH . 
L 6 HOH A 27 327 67 HOH HOH . 
L 6 HOH A 28 328 68 HOH HOH . 
L 6 HOH A 29 329 71 HOH HOH . 
L 6 HOH A 30 330 77 HOH HOH . 
L 6 HOH A 31 331 78 HOH HOH . 
L 6 HOH A 32 332 79 HOH HOH . 
L 6 HOH A 33 333 80 HOH HOH . 
L 6 HOH A 34 334 81 HOH HOH . 
L 6 HOH A 35 335 82 HOH HOH . 
L 6 HOH A 36 336 84 HOH HOH . 
L 6 HOH A 37 337 86 HOH HOH . 
L 6 HOH A 38 338 89 HOH HOH . 
L 6 HOH A 39 339 92 HOH HOH . 
L 6 HOH A 40 340 93 HOH HOH . 
L 6 HOH A 41 341 97 HOH HOH . 
L 6 HOH A 42 342 99 HOH HOH . 
L 6 HOH A 43 343 100 HOH HOH . 
L 6 HOH A 44 344 108 HOH HOH . 
L 6 HOH A 45 345 112 HOH HOH . 
L 6 HOH A 46 346 114 HOH HOH . 
L 6 HOH A 47 347 115 HOH HOH . 
L 6 HOH A 48 348 121 HOH HOH . 
L 6 HOH A 49 349 122 HOH HOH . 
L 6 HOH A 50 350 126 HOH HOH . 
L 6 HOH A 51 351 127 HOH HOH . 
L 6 HOH A 52 352 128 HOH HOH . 
L 6 HOH A 53 353 129 HOH HOH . 
L 6 HOH A 54 354 130 HOH HOH . 
L 6 HOH A 55 355 131 HOH HOH . 
L 6 HOH A 56 356 132 HOH HOH . 
L 6 HOH A 57 357 133 HOH HOH . 
L 6 HOH A 58 358 136 HOH HOH . 
L 6 HOH A 59 359 138 HOH HOH . 
L 6 HOH A 60 360 139 HOH HOH . 
L 6 HOH A 61 361 140 HOH HOH . 
L 6 HOH A 62 362 141 HOH HOH . 
L 6 HOH A 63 363 144 HOH HOH . 
L 6 HOH A 64 364 145 HOH HOH . 
L 6 HOH A 65 365 149 HOH HOH . 
L 6 HOH A 66 366 152 HOH HOH . 
L 6 HOH A 67 367 154 HOH HOH . 
L 6 HOH A 68 368 155 HOH HOH . 
L 6 HOH A 69 369 157 HOH HOH . 
L 6 HOH A 70 370 158 HOH HOH . 
L 6 HOH A 71 371 159 HOH HOH . 
L 6 HOH A 72 372 160 HOH HOH . 
L 6 HOH A 73 373 164 HOH HOH . 
L 6 HOH A 74 374 165 HOH HOH . 
M 6 HOH B 1 301 1 HOH HOH . 
M 6 HOH B 2 302 2 HOH HOH . 
M 6 HOH B 3 303 5 HOH HOH . 
M 6 HOH B 4 304 6 HOH HOH . 
M 6 HOH B 5 305 9 HOH HOH . 
M 6 HOH B 6 306 10 HOH HOH . 
M 6 HOH B 7 307 12 HOH HOH . 
M 6 HOH B 8 308 13 HOH HOH . 
M 6 HOH B 9 309 14 HOH HOH . 
M 6 HOH B 10 310 15 HOH HOH . 
M 6 HOH B 11 311 16 HOH HOH . 
M 6 HOH B 12 312 17 HOH HOH . 
M 6 HOH B 13 313 19 HOH HOH . 
M 6 HOH B 14 314 21 HOH HOH . 
M 6 HOH B 15 315 22 HOH HOH . 
M 6 HOH B 16 316 24 HOH HOH . 
M 6 HOH B 17 317 26 HOH HOH . 
M 6 HOH B 18 318 27 HOH HOH . 
M 6 HOH B 19 319 29 HOH HOH . 
M 6 HOH B 20 320 30 HOH HOH . 
M 6 HOH B 21 321 31 HOH HOH . 
M 6 HOH B 22 322 32 HOH HOH . 
M 6 HOH B 23 323 34 HOH HOH . 
M 6 HOH B 24 324 36 HOH HOH . 
M 6 HOH B 25 325 37 HOH HOH . 
M 6 HOH B 26 326 38 HOH HOH . 
M 6 HOH B 27 327 39 HOH HOH . 
M 6 HOH B 28 328 40 HOH HOH . 
M 6 HOH B 29 329 41 HOH HOH . 
M 6 HOH B 30 330 42 HOH HOH . 
M 6 HOH B 31 331 43 HOH HOH . 
M 6 HOH B 32 332 45 HOH HOH . 
M 6 HOH B 33 333 47 HOH HOH . 
M 6 HOH B 34 334 49 HOH HOH . 
M 6 HOH B 35 335 50 HOH HOH . 
M 6 HOH B 36 336 56 HOH HOH . 
M 6 HOH B 37 337 57 HOH HOH . 
M 6 HOH B 38 338 60 HOH HOH . 
M 6 HOH B 39 339 61 HOH HOH . 
M 6 HOH B 40 340 65 HOH HOH . 
M 6 HOH B 41 341 69 HOH HOH . 
M 6 HOH B 42 342 70 HOH HOH . 
M 6 HOH B 43 343 72 HOH HOH . 
M 6 HOH B 44 344 73 HOH HOH . 
M 6 HOH B 45 345 74 HOH HOH . 
M 6 HOH B 46 346 75 HOH HOH . 
M 6 HOH B 47 347 76 HOH HOH . 
M 6 HOH B 48 348 83 HOH HOH . 
M 6 HOH B 49 349 85 HOH HOH . 
M 6 HOH B 50 350 87 HOH HOH . 
M 6 HOH B 51 351 88 HOH HOH . 
M 6 HOH B 52 352 90 HOH HOH . 
M 6 HOH B 53 353 91 HOH HOH . 
M 6 HOH B 54 354 94 HOH HOH . 
M 6 HOH B 55 355 95 HOH HOH . 
M 6 HOH B 56 356 96 HOH HOH . 
M 6 HOH B 57 357 98 HOH HOH . 
M 6 HOH B 58 358 101 HOH HOH . 
M 6 HOH B 59 359 102 HOH HOH . 
M 6 HOH B 60 360 103 HOH HOH . 
M 6 HOH B 61 361 104 HOH HOH . 
M 6 HOH B 62 362 105 HOH HOH . 
M 6 HOH B 63 363 106 HOH HOH . 
M 6 HOH B 64 364 107 HOH HOH . 
M 6 HOH B 65 365 109 HOH HOH . 
M 6 HOH B 66 366 110 HOH HOH . 
M 6 HOH B 67 367 111 HOH HOH . 
M 6 HOH B 68 368 113 HOH HOH . 
M 6 HOH B 69 369 116 HOH HOH . 
M 6 HOH B 70 370 117 HOH HOH . 
M 6 HOH B 71 371 118 HOH HOH . 
M 6 HOH B 72 372 119 HOH HOH . 
M 6 HOH B 73 373 120 HOH HOH . 
M 6 HOH B 74 374 123 HOH HOH . 
M 6 HOH B 75 375 124 HOH HOH . 
M 6 HOH B 76 376 125 HOH HOH . 
M 6 HOH B 77 377 134 HOH HOH . 
M 6 HOH B 78 378 135 HOH HOH . 
M 6 HOH B 79 379 137 HOH HOH . 
M 6 HOH B 80 380 142 HOH HOH . 
M 6 HOH B 81 381 143 HOH HOH . 
M 6 HOH B 82 382 146 HOH HOH . 
M 6 HOH B 83 383 147 HOH HOH . 
M 6 HOH B 84 384 148 HOH HOH . 
M 6 HOH B 85 385 150 HOH HOH . 
M 6 HOH B 86 386 151 HOH HOH . 
M 6 HOH B 87 387 153 HOH HOH . 
M 6 HOH B 88 388 156 HOH HOH . 
M 6 HOH B 89 389 161 HOH HOH . 
M 6 HOH B 90 390 162 HOH HOH . 
M 6 HOH B 91 391 163 HOH HOH . 
M 6 HOH B 92 392 166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 3.762 8.036 23.748 1 39.65 ? C1 GOL 205 A 1 
HETATM 2 O O1 GOL . . . G 4 4.503 6.846 23.58 1 46.04 ? O1 GOL 205 A 1 
HETATM 3 C C2 GOL . . . G 4 4.415 8.878 24.868 1 52.36 ? C2 GOL 205 A 1 
HETATM 4 O O2 GOL . . . G 4 5.741 9.304 24.599 1 27.32 ? O2 GOL 205 A 1 
HETATM 5 C C3 GOL . . . G 4 4.477 8.1 26.171 1 66.67 ? C3 GOL 205 A 1 
HETATM 6 O O3 GOL . . . G 4 5.735 8.302 26.798 1 62.82 ? O3 GOL 205 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#