data_4RGX # _model_server_result.job_id Tq_kbfRK8SK1jPEqciSX_g _model_server_result.datetime_utc '2024-11-12 21:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4RGX # _exptl.entry_id 4RGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RGX _cell.length_a 63.584 _cell.length_b 83.105 _cell.length_c 63.049 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.584 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 22 A TYR 19 1_555 A N MSE 23 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 23 A MSE 20 1_555 A N ILE 24 A ILE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLN 127 A GLN 124 1_555 A N MSE 128 A MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 128 A MSE 125 1_555 A N LEU 129 A LEU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C LEU 146 A LEU 143 1_555 A N MSE 147 A MSE 144 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C LEU 146 A LEU 143 1_555 A N MSE 147 A MSE 144 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 147 A MSE 144 1_555 A N VAL 148 A VAL 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C TYR 22 B TYR 19 1_555 B N MSE 23 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C MSE 23 B MSE 20 1_555 B N ILE 24 B ILE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C GLN 127 B GLN 124 1_555 B N MSE 128 B MSE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C MSE 128 B MSE 125 1_555 B N LEU 129 B LEU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 B C LEU 146 B LEU 143 1_555 B N MSE 147 B MSE 144 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C LEU 146 B LEU 143 1_555 B N MSE 147 B MSE 144 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 147 B MSE 144 1_555 B N VAL 148 B VAL 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 4RGX _atom_sites.fract_transf_matrix[1][1] 0.015727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DHB A 1 201 171 DHB DHB . D 3 EDO A 1 202 172 EDO EDO . E 4 CL A 1 203 173 CL CL . F 2 DHB A 1 204 171 DHB DHB . G 3 EDO B 1 201 172 EDO EDO . H 4 CL B 1 202 173 CL CL . I 5 HOH A 1 301 2 HOH HOH . I 5 HOH A 2 302 3 HOH HOH . I 5 HOH A 3 303 4 HOH HOH . I 5 HOH A 4 304 5 HOH HOH . I 5 HOH A 5 305 8 HOH HOH . I 5 HOH A 6 306 10 HOH HOH . I 5 HOH A 7 307 11 HOH HOH . I 5 HOH A 8 308 12 HOH HOH . I 5 HOH A 9 309 13 HOH HOH . I 5 HOH A 10 310 14 HOH HOH . I 5 HOH A 11 311 15 HOH HOH . I 5 HOH A 12 312 16 HOH HOH . I 5 HOH A 13 313 17 HOH HOH . I 5 HOH A 14 314 18 HOH HOH . I 5 HOH A 15 315 19 HOH HOH . I 5 HOH A 16 316 21 HOH HOH . I 5 HOH A 17 317 22 HOH HOH . I 5 HOH A 18 318 23 HOH HOH . I 5 HOH A 19 319 24 HOH HOH . I 5 HOH A 20 320 25 HOH HOH . I 5 HOH A 21 321 26 HOH HOH . I 5 HOH A 22 322 27 HOH HOH . I 5 HOH A 23 323 28 HOH HOH . I 5 HOH A 24 324 30 HOH HOH . I 5 HOH A 25 325 32 HOH HOH . I 5 HOH A 26 326 36 HOH HOH . I 5 HOH A 27 327 37 HOH HOH . I 5 HOH A 28 328 39 HOH HOH . I 5 HOH A 29 329 40 HOH HOH . I 5 HOH A 30 330 42 HOH HOH . I 5 HOH A 31 331 43 HOH HOH . I 5 HOH A 32 332 44 HOH HOH . I 5 HOH A 33 333 45 HOH HOH . I 5 HOH A 34 334 46 HOH HOH . I 5 HOH A 35 335 50 HOH HOH . I 5 HOH A 36 336 51 HOH HOH . I 5 HOH A 37 337 52 HOH HOH . I 5 HOH A 38 338 55 HOH HOH . I 5 HOH A 39 339 58 HOH HOH . I 5 HOH A 40 340 60 HOH HOH . I 5 HOH A 41 341 63 HOH HOH . I 5 HOH A 42 342 66 HOH HOH . I 5 HOH A 43 343 67 HOH HOH . I 5 HOH A 44 344 68 HOH HOH . I 5 HOH A 45 345 69 HOH HOH . I 5 HOH A 46 346 70 HOH HOH . I 5 HOH A 47 347 72 HOH HOH . I 5 HOH A 48 348 73 HOH HOH . I 5 HOH A 49 349 75 HOH HOH . I 5 HOH A 50 350 76 HOH HOH . I 5 HOH A 51 351 77 HOH HOH . I 5 HOH A 52 352 80 HOH HOH . I 5 HOH A 53 353 84 HOH HOH . I 5 HOH A 54 354 85 HOH HOH . I 5 HOH A 55 355 86 HOH HOH . I 5 HOH A 56 356 88 HOH HOH . I 5 HOH A 57 357 89 HOH HOH . I 5 HOH A 58 358 90 HOH HOH . I 5 HOH A 59 359 91 HOH HOH . I 5 HOH A 60 360 92 HOH HOH . I 5 HOH A 61 361 93 HOH HOH . I 5 HOH A 62 362 95 HOH HOH . I 5 HOH A 63 363 96 HOH HOH . I 5 HOH A 64 364 97 HOH HOH . I 5 HOH A 65 365 98 HOH HOH . I 5 HOH A 66 366 100 HOH HOH . I 5 HOH A 67 367 103 HOH HOH . I 5 HOH A 68 368 104 HOH HOH . I 5 HOH A 69 369 107 HOH HOH . I 5 HOH A 70 370 108 HOH HOH . I 5 HOH A 71 371 112 HOH HOH . I 5 HOH A 72 372 116 HOH HOH . I 5 HOH A 73 373 117 HOH HOH . I 5 HOH A 74 374 118 HOH HOH . I 5 HOH A 75 375 119 HOH HOH . I 5 HOH A 76 376 120 HOH HOH . I 5 HOH A 77 377 121 HOH HOH . I 5 HOH A 78 378 122 HOH HOH . I 5 HOH A 79 379 125 HOH HOH . I 5 HOH A 80 380 132 HOH HOH . I 5 HOH A 81 381 133 HOH HOH . I 5 HOH A 82 382 134 HOH HOH . I 5 HOH A 83 383 135 HOH HOH . I 5 HOH A 84 384 137 HOH HOH . I 5 HOH A 85 385 145 HOH HOH . I 5 HOH A 86 386 147 HOH HOH . I 5 HOH A 87 387 149 HOH HOH . I 5 HOH A 88 388 150 HOH HOH . I 5 HOH A 89 389 151 HOH HOH . I 5 HOH A 90 390 152 HOH HOH . I 5 HOH A 91 391 153 HOH HOH . I 5 HOH A 92 392 159 HOH HOH . I 5 HOH A 93 393 160 HOH HOH . I 5 HOH A 94 394 161 HOH HOH . I 5 HOH A 95 395 162 HOH HOH . I 5 HOH A 96 396 165 HOH HOH . I 5 HOH A 97 397 166 HOH HOH . I 5 HOH A 98 398 169 HOH HOH . I 5 HOH A 99 399 170 HOH HOH . I 5 HOH A 100 400 171 HOH HOH . I 5 HOH A 101 401 172 HOH HOH . I 5 HOH A 102 402 174 HOH HOH . I 5 HOH A 103 403 175 HOH HOH . I 5 HOH A 104 404 176 HOH HOH . I 5 HOH A 105 405 177 HOH HOH . I 5 HOH A 106 406 178 HOH HOH . I 5 HOH A 107 407 179 HOH HOH . I 5 HOH A 108 408 180 HOH HOH . I 5 HOH A 109 409 181 HOH HOH . I 5 HOH A 110 410 182 HOH HOH . J 5 HOH B 1 301 144 HOH HOH . J 5 HOH B 2 302 1 HOH HOH . J 5 HOH B 3 303 6 HOH HOH . J 5 HOH B 4 304 7 HOH HOH . J 5 HOH B 5 305 9 HOH HOH . J 5 HOH B 6 306 20 HOH HOH . J 5 HOH B 7 307 29 HOH HOH . J 5 HOH B 8 308 31 HOH HOH . J 5 HOH B 9 309 33 HOH HOH . J 5 HOH B 10 310 34 HOH HOH . J 5 HOH B 11 311 35 HOH HOH . J 5 HOH B 12 312 38 HOH HOH . J 5 HOH B 13 313 41 HOH HOH . J 5 HOH B 14 314 47 HOH HOH . J 5 HOH B 15 315 48 HOH HOH . J 5 HOH B 16 316 49 HOH HOH . J 5 HOH B 17 317 53 HOH HOH . J 5 HOH B 18 318 54 HOH HOH . J 5 HOH B 19 319 56 HOH HOH . J 5 HOH B 20 320 57 HOH HOH . J 5 HOH B 21 321 59 HOH HOH . J 5 HOH B 22 322 61 HOH HOH . J 5 HOH B 23 323 62 HOH HOH . J 5 HOH B 24 324 64 HOH HOH . J 5 HOH B 25 325 65 HOH HOH . J 5 HOH B 26 326 71 HOH HOH . J 5 HOH B 27 327 74 HOH HOH . J 5 HOH B 28 328 78 HOH HOH . J 5 HOH B 29 329 79 HOH HOH . J 5 HOH B 30 330 81 HOH HOH . J 5 HOH B 31 331 82 HOH HOH . J 5 HOH B 32 332 83 HOH HOH . J 5 HOH B 33 333 87 HOH HOH . J 5 HOH B 34 334 94 HOH HOH . J 5 HOH B 35 335 99 HOH HOH . J 5 HOH B 36 336 101 HOH HOH . J 5 HOH B 37 337 102 HOH HOH . J 5 HOH B 38 338 105 HOH HOH . J 5 HOH B 39 339 106 HOH HOH . J 5 HOH B 40 340 109 HOH HOH . J 5 HOH B 41 341 110 HOH HOH . J 5 HOH B 42 342 111 HOH HOH . J 5 HOH B 43 343 113 HOH HOH . J 5 HOH B 44 344 114 HOH HOH . J 5 HOH B 45 345 115 HOH HOH . J 5 HOH B 46 346 123 HOH HOH . J 5 HOH B 47 347 124 HOH HOH . J 5 HOH B 48 348 126 HOH HOH . J 5 HOH B 49 349 127 HOH HOH . J 5 HOH B 50 350 128 HOH HOH . J 5 HOH B 51 351 129 HOH HOH . J 5 HOH B 52 352 130 HOH HOH . J 5 HOH B 53 353 131 HOH HOH . J 5 HOH B 54 354 136 HOH HOH . J 5 HOH B 55 355 355 HOH HOH . J 5 HOH B 56 356 139 HOH HOH . J 5 HOH B 57 357 140 HOH HOH . J 5 HOH B 58 358 141 HOH HOH . J 5 HOH B 59 359 142 HOH HOH . J 5 HOH B 60 360 143 HOH HOH . J 5 HOH B 61 361 146 HOH HOH . J 5 HOH B 62 362 148 HOH HOH . J 5 HOH B 63 363 154 HOH HOH . J 5 HOH B 64 364 155 HOH HOH . J 5 HOH B 65 365 156 HOH HOH . J 5 HOH B 66 366 157 HOH HOH . J 5 HOH B 67 367 158 HOH HOH . J 5 HOH B 68 368 163 HOH HOH . J 5 HOH B 69 369 164 HOH HOH . J 5 HOH B 70 370 167 HOH HOH . J 5 HOH B 71 371 168 HOH HOH . J 5 HOH B 72 372 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 26.772 7.333 39.095 1 47.17 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . D 3 28.098 7.657 39.562 1 40.99 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . D 3 26.407 8.21 37.889 1 49.94 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . D 3 25.995 9.516 38.329 1 37.29 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #