data_4RGZ # _model_server_result.job_id 1XPXmdGudIjQiX-2hAdeXg _model_server_result.datetime_utc '2025-02-26 23:11:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":405}' # _entry.id 4RGZ # _exptl.entry_id 4RGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RGZ _cell.length_a 97.6 _cell.length_b 123.72 _cell.length_c 136.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,P,Q 1 1 C,D,I,J,K,L,M,N,O,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 226 A ASP 229 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OD1 ASP 237 A ASP 240 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 A OE1 GLU 344 A GLU 347 1_555 E ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 E ZN ZN . A ZN 401 1_555 P O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 B OD1 ASP 226 N ASP 229 1_555 H ZN ZN . N ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 B OD1 ASP 237 N ASP 240 1_555 H ZN ZN . N ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 B OE1 GLU 344 N GLU 347 1_555 H ZN ZN . N ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 G ZN ZN . N ZN 401 1_555 Q O HOH . N HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc9 C OD1 ASP 226 1 ASP 229 1_555 I ZN ZN . 1 ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc10 C OD1 ASP 237 1 ASP 240 1_555 I ZN ZN . 1 ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc11 C OE1 GLU 344 1 GLU 347 1_555 I ZN ZN . 1 ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc12 J O4 PO4 . 1 PO4 402 1_555 L ZN ZN . 1 ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc13 D OD1 ASP 226 e ASP 229 1_555 N ZN ZN . e ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc14 D OD1 ASP 237 e ASP 240 1_555 N ZN ZN . e ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc15 D OE1 GLU 344 e GLU 347 1_555 N ZN ZN . e ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4RGZ _atom_sites.fract_transf_matrix[1][1] 0.010246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 401 1 ZN ZN . F 2 ZN A 1 402 1 ZN ZN . G 2 ZN N 1 401 2 ZN ZN . H 2 ZN N 1 402 3 ZN ZN . I 2 ZN 1 1 401 3 ZN ZN . J 3 PO4 1 1 402 1 PO4 PO4 . K 3 PO4 1 1 403 1 PO4 PO4 . L 2 ZN 1 1 404 1 ZN ZN . M 3 PO4 1 1 405 1 PO4 PO4 . N 2 ZN e 1 401 1 ZN ZN . O 2 ZN e 1 402 2 ZN ZN . P 4 HOH A 1 501 1 HOH HOH . P 4 HOH A 2 502 2 HOH HOH . P 4 HOH A 3 503 4 HOH HOH . P 4 HOH A 4 504 5 HOH HOH . P 4 HOH A 5 505 11 HOH HOH . P 4 HOH A 6 506 1 HOH HOH . P 4 HOH A 7 507 2 HOH HOH . P 4 HOH A 8 508 3 HOH HOH . P 4 HOH A 9 509 4 HOH HOH . P 4 HOH A 10 510 5 HOH HOH . P 4 HOH A 11 511 6 HOH HOH . P 4 HOH A 12 512 7 HOH HOH . P 4 HOH A 13 513 8 HOH HOH . P 4 HOH A 14 514 9 HOH HOH . P 4 HOH A 15 515 10 HOH HOH . P 4 HOH A 16 516 11 HOH HOH . P 4 HOH A 17 517 12 HOH HOH . P 4 HOH A 18 518 1 HOH HOH . P 4 HOH A 19 519 3 HOH HOH . P 4 HOH A 20 520 4 HOH HOH . P 4 HOH A 21 521 29 HOH HOH . P 4 HOH A 22 522 30 HOH HOH . P 4 HOH A 23 523 31 HOH HOH . P 4 HOH A 24 524 3 HOH HOH . P 4 HOH A 25 525 4 HOH HOH . P 4 HOH A 26 526 7 HOH HOH . P 4 HOH A 27 527 8 HOH HOH . P 4 HOH A 28 528 9 HOH HOH . P 4 HOH A 29 529 10 HOH HOH . P 4 HOH A 30 530 11 HOH HOH . P 4 HOH A 31 531 12 HOH HOH . P 4 HOH A 32 532 1 HOH HOH . P 4 HOH A 33 533 2 HOH HOH . P 4 HOH A 34 534 3 HOH HOH . P 4 HOH A 35 535 4 HOH HOH . P 4 HOH A 36 536 5 HOH HOH . P 4 HOH A 37 537 6 HOH HOH . P 4 HOH A 38 538 7 HOH HOH . P 4 HOH A 39 539 8 HOH HOH . P 4 HOH A 40 540 9 HOH HOH . P 4 HOH A 41 541 10 HOH HOH . P 4 HOH A 42 542 11 HOH HOH . P 4 HOH A 43 543 12 HOH HOH . P 4 HOH A 44 544 13 HOH HOH . P 4 HOH A 45 545 14 HOH HOH . P 4 HOH A 46 546 15 HOH HOH . P 4 HOH A 47 547 16 HOH HOH . P 4 HOH A 48 548 17 HOH HOH . Q 4 HOH N 1 501 6 HOH HOH . Q 4 HOH N 2 502 7 HOH HOH . Q 4 HOH N 3 503 12 HOH HOH . Q 4 HOH N 4 504 13 HOH HOH . Q 4 HOH N 5 505 14 HOH HOH . Q 4 HOH N 6 506 15 HOH HOH . Q 4 HOH N 7 507 16 HOH HOH . Q 4 HOH N 8 508 17 HOH HOH . Q 4 HOH N 9 509 18 HOH HOH . Q 4 HOH N 10 510 19 HOH HOH . Q 4 HOH N 11 511 20 HOH HOH . Q 4 HOH N 12 512 21 HOH HOH . Q 4 HOH N 13 513 5 HOH HOH . Q 4 HOH N 14 514 6 HOH HOH . Q 4 HOH N 15 515 7 HOH HOH . Q 4 HOH N 16 516 8 HOH HOH . Q 4 HOH N 17 517 9 HOH HOH . Q 4 HOH N 18 518 10 HOH HOH . Q 4 HOH N 19 519 11 HOH HOH . Q 4 HOH N 20 520 13 HOH HOH . Q 4 HOH N 21 521 14 HOH HOH . Q 4 HOH N 22 522 15 HOH HOH . Q 4 HOH N 23 523 16 HOH HOH . Q 4 HOH N 24 524 17 HOH HOH . Q 4 HOH N 25 525 18 HOH HOH . Q 4 HOH N 26 526 19 HOH HOH . Q 4 HOH N 27 527 20 HOH HOH . Q 4 HOH N 28 528 21 HOH HOH . Q 4 HOH N 29 529 22 HOH HOH . Q 4 HOH N 30 530 23 HOH HOH . Q 4 HOH N 31 531 24 HOH HOH . Q 4 HOH N 32 532 25 HOH HOH . Q 4 HOH N 33 533 26 HOH HOH . Q 4 HOH N 34 534 27 HOH HOH . Q 4 HOH N 35 535 28 HOH HOH . Q 4 HOH N 36 536 29 HOH HOH . Q 4 HOH N 37 537 30 HOH HOH . Q 4 HOH N 38 538 31 HOH HOH . Q 4 HOH N 39 539 1 HOH HOH . Q 4 HOH N 40 540 2 HOH HOH . Q 4 HOH N 41 541 3 HOH HOH . Q 4 HOH N 42 542 4 HOH HOH . Q 4 HOH N 43 543 5 HOH HOH . Q 4 HOH N 44 544 6 HOH HOH . Q 4 HOH N 45 545 18 HOH HOH . Q 4 HOH N 46 546 19 HOH HOH . Q 4 HOH N 47 547 20 HOH HOH . Q 4 HOH N 48 548 21 HOH HOH . R 4 HOH 1 1 501 15 HOH HOH . R 4 HOH 1 2 502 19 HOH HOH . R 4 HOH 1 3 503 22 HOH HOH . R 4 HOH 1 4 504 23 HOH HOH . R 4 HOH 1 5 505 24 HOH HOH . R 4 HOH 1 6 506 25 HOH HOH . R 4 HOH 1 7 507 28 HOH HOH . R 4 HOH 1 8 508 29 HOH HOH . R 4 HOH 1 9 509 30 HOH HOH . R 4 HOH 1 10 510 31 HOH HOH . R 4 HOH 1 11 511 32 HOH HOH . R 4 HOH 1 12 512 33 HOH HOH . R 4 HOH 1 13 513 34 HOH HOH . R 4 HOH 1 14 514 35 HOH HOH . R 4 HOH 1 15 515 36 HOH HOH . R 4 HOH 1 16 516 37 HOH HOH . R 4 HOH 1 17 517 38 HOH HOH . R 4 HOH 1 18 518 12 HOH HOH . R 4 HOH 1 19 519 13 HOH HOH . R 4 HOH 1 20 520 14 HOH HOH . R 4 HOH 1 21 521 15 HOH HOH . R 4 HOH 1 22 522 16 HOH HOH . R 4 HOH 1 23 523 1 HOH HOH . R 4 HOH 1 24 524 33 HOH HOH . R 4 HOH 1 25 525 34 HOH HOH . R 4 HOH 1 26 526 35 HOH HOH . R 4 HOH 1 27 527 36 HOH HOH . R 4 HOH 1 28 528 37 HOH HOH . R 4 HOH 1 29 529 38 HOH HOH . R 4 HOH 1 30 530 39 HOH HOH . R 4 HOH 1 31 531 42 HOH HOH . R 4 HOH 1 32 532 46 HOH HOH . R 4 HOH 1 33 533 7 HOH HOH . R 4 HOH 1 34 534 8 HOH HOH . R 4 HOH 1 35 535 9 HOH HOH . R 4 HOH 1 36 536 10 HOH HOH . R 4 HOH 1 37 537 11 HOH HOH . R 4 HOH 1 38 538 12 HOH HOH . R 4 HOH 1 39 539 13 HOH HOH . R 4 HOH 1 40 540 14 HOH HOH . R 4 HOH 1 41 541 15 HOH HOH . R 4 HOH 1 42 542 16 HOH HOH . R 4 HOH 1 43 543 17 HOH HOH . R 4 HOH 1 44 544 18 HOH HOH . R 4 HOH 1 45 545 19 HOH HOH . R 4 HOH 1 46 546 27 HOH HOH . R 4 HOH 1 47 547 28 HOH HOH . S 4 HOH e 1 501 17 HOH HOH . S 4 HOH e 2 502 18 HOH HOH . S 4 HOH e 3 503 19 HOH HOH . S 4 HOH e 4 504 20 HOH HOH . S 4 HOH e 5 505 21 HOH HOH . S 4 HOH e 6 506 22 HOH HOH . S 4 HOH e 7 507 23 HOH HOH . S 4 HOH e 8 508 24 HOH HOH . S 4 HOH e 9 509 25 HOH HOH . S 4 HOH e 10 510 26 HOH HOH . S 4 HOH e 11 511 28 HOH HOH . S 4 HOH e 12 512 32 HOH HOH . S 4 HOH e 13 513 40 HOH HOH . S 4 HOH e 14 514 41 HOH HOH . S 4 HOH e 15 515 43 HOH HOH . S 4 HOH e 16 516 44 HOH HOH . S 4 HOH e 17 517 45 HOH HOH . S 4 HOH e 18 518 47 HOH HOH . S 4 HOH e 19 519 48 HOH HOH . S 4 HOH e 20 520 49 HOH HOH . S 4 HOH e 21 521 20 HOH HOH . S 4 HOH e 22 522 21 HOH HOH . S 4 HOH e 23 523 22 HOH HOH . S 4 HOH e 24 524 23 HOH HOH . S 4 HOH e 25 525 24 HOH HOH . S 4 HOH e 26 526 25 HOH HOH . S 4 HOH e 27 527 26 HOH HOH . S 4 HOH e 28 528 29 HOH HOH . S 4 HOH e 29 529 31 HOH HOH . S 4 HOH e 30 530 32 HOH HOH . S 4 HOH e 31 531 33 HOH HOH . S 4 HOH e 32 532 34 HOH HOH . S 4 HOH e 33 533 35 HOH HOH . S 4 HOH e 34 534 37 HOH HOH . S 4 HOH e 35 535 38 HOH HOH . S 4 HOH e 36 536 39 HOH HOH . S 4 HOH e 37 537 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 3 7.609 134.759 7.358 1 79.47 ? P PO4 405 1 1 HETATM 2 O O1 PO4 . . . M 3 7.738 134.221 5.947 1 81.71 ? O1 PO4 405 1 1 HETATM 3 O O2 PO4 . . . M 3 7.087 136.179 7.349 1 79.88 ? O2 PO4 405 1 1 HETATM 4 O O3 PO4 . . . M 3 6.589 133.945 8.12 1 74.69 ? O3 PO4 405 1 1 HETATM 5 O O4 PO4 . . . M 3 8.978 134.694 8.054 1 78.21 ? O4 PO4 405 1 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #