data_4RH0
#
_model_server_result.job_id            gQ4mvwb0iERND4NRVaaUTg 
_model_server_result.datetime_utc      '2024-11-20 11:24:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rh0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4RH0 
#
_exptl.entry_id    4RH0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              446.34 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RH0 
_cell.length_a            54.05 
_cell.length_b            63 
_cell.length_c            143.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RH0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 117 A CYS 90 1_555 J FE3 SF4 . A SF4 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc2 A SG CYS 121 A CYS 94 1_555 J FE1 SF4 . A SF4 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc3 A SG CYS 124 A CYS 97 1_555 J FE2 SF4 . A SF4 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc4 B O EEM . A EEM 401 1_555 J FE4 SF4 . A SF4 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc5 B N EEM . A EEM 401 1_555 J FE4 SF4 . A SF4 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
#
_chem_comp.formula           'C15 H23 N6 O5 Se 1' 
_chem_comp.formula_weight    446.34 
_chem_comp.id                EEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Se-ADENOSYLSELENOMETHIONINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EEM doub 92 n y 
C2 N3 EEM sing 93 n y 
C2 H2 EEM sing 94 n n 
C4 N3 EEM doub 95 n y 
C5 C4 EEM sing 96 n y 
N9 C4 EEM sing 97 n y 
N9 C1' EEM sing 98 n n 
C1' O4' EEM sing 99 n n 
C1' C2' EEM sing 100 n n 
C1' H1' EEM sing 101 n n 
O2' C2' EEM sing 102 n n 
C2' C3' EEM sing 103 n n 
C2' H2' EEM sing 104 n n 
C4' C3' EEM sing 105 n n 
O3' C3' EEM sing 106 n n 
C3' H3' EEM sing 107 n n 
O4' C4' EEM sing 108 n n 
C4' C5' EEM sing 109 n n 
C4' H4' EEM sing 110 n n 
C5' H5' EEM sing 111 n n 
C5' "H5'A" EEM sing 112 n n 
C5' SE EEM sing 113 n n 
C O EEM doub 114 n n 
CA C EEM sing 115 n n 
C OXT EEM sing 116 n n 
OXT HOXT EEM sing 117 n n 
CB CA EEM sing 118 n n 
N CA EEM sing 119 n n 
CA HA EEM sing 120 n n 
N HN EEM sing 121 n n 
N HNA EEM sing 122 n n 
CB CG EEM sing 123 n n 
CB HB EEM sing 124 n n 
CB HBA EEM sing 125 n n 
SE CG EEM sing 126 n n 
CG HG EEM sing 127 n n 
CG HGA EEM sing 128 n n 
SE CE EEM sing 129 n n 
CE HE EEM sing 130 n n 
CE HEA EEM sing 131 n n 
CE HEB EEM sing 132 n n 
O3' HO3' EEM sing 133 n n 
O2' HO2' EEM sing 134 n n 
C8 N9 EEM sing 135 n y 
N7 C8 EEM doub 136 n y 
C8 H8 EEM sing 137 n n 
N7 C5 EEM sing 138 n y 
C6 C5 EEM doub 139 n y 
C6 N1 EEM sing 140 n y 
N6 C6 EEM sing 141 n n 
N6 HN6 EEM sing 142 n n 
N6 HN6A EEM sing 143 n n 
#
_atom_sites.entry_id                     4RH0 
_atom_sites.fract_transf_matrix[1][1]    0.018501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006992 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EEM A 1 401 1 EEM EEM . 
C 3 SO4 A 1 402 1 SO4 SO4 . 
D 3 SO4 A 1 403 2 SO4 SO4 . 
E 3 SO4 A 1 404 4 SO4 SO4 . 
F 3 SO4 A 1 405 5 SO4 SO4 . 
G 3 SO4 A 1 406 6 SO4 SO4 . 
H 3 SO4 A 1 407 7 SO4 SO4 . 
I 4 EDO A 1 408 8 EDO EDO . 
J 5 SF4 A 1 409 1 SF4 SF4 . 
K 6 HOH A 1 501 1 HOH HOH . 
K 6 HOH A 2 502 6 HOH HOH . 
K 6 HOH A 3 503 7 HOH HOH . 
K 6 HOH A 4 504 8 HOH HOH . 
K 6 HOH A 5 505 10 HOH HOH . 
K 6 HOH A 6 506 11 HOH HOH . 
K 6 HOH A 7 507 12 HOH HOH . 
K 6 HOH A 8 508 13 HOH HOH . 
K 6 HOH A 9 509 14 HOH HOH . 
K 6 HOH A 10 510 15 HOH HOH . 
K 6 HOH A 11 511 16 HOH HOH . 
K 6 HOH A 12 512 18 HOH HOH . 
K 6 HOH A 13 513 20 HOH HOH . 
K 6 HOH A 14 514 21 HOH HOH . 
K 6 HOH A 15 515 23 HOH HOH . 
K 6 HOH A 16 516 24 HOH HOH . 
K 6 HOH A 17 517 27 HOH HOH . 
K 6 HOH A 18 518 28 HOH HOH . 
K 6 HOH A 19 519 29 HOH HOH . 
K 6 HOH A 20 520 30 HOH HOH . 
K 6 HOH A 21 521 33 HOH HOH . 
K 6 HOH A 22 522 34 HOH HOH . 
K 6 HOH A 23 523 36 HOH HOH . 
K 6 HOH A 24 524 37 HOH HOH . 
K 6 HOH A 25 525 38 HOH HOH . 
K 6 HOH A 26 526 42 HOH HOH . 
K 6 HOH A 27 527 43 HOH HOH . 
K 6 HOH A 28 528 47 HOH HOH . 
K 6 HOH A 29 529 48 HOH HOH . 
K 6 HOH A 30 530 49 HOH HOH . 
K 6 HOH A 31 531 50 HOH HOH . 
K 6 HOH A 32 532 54 HOH HOH . 
K 6 HOH A 33 533 55 HOH HOH . 
K 6 HOH A 34 534 57 HOH HOH . 
K 6 HOH A 35 535 58 HOH HOH . 
K 6 HOH A 36 536 59 HOH HOH . 
K 6 HOH A 37 537 60 HOH HOH . 
K 6 HOH A 38 538 61 HOH HOH . 
K 6 HOH A 39 539 62 HOH HOH . 
K 6 HOH A 40 540 63 HOH HOH . 
K 6 HOH A 41 541 64 HOH HOH . 
K 6 HOH A 42 542 65 HOH HOH . 
K 6 HOH A 43 543 66 HOH HOH . 
K 6 HOH A 44 544 67 HOH HOH . 
K 6 HOH A 45 545 68 HOH HOH . 
K 6 HOH A 46 546 69 HOH HOH . 
K 6 HOH A 47 547 71 HOH HOH . 
K 6 HOH A 48 548 72 HOH HOH . 
K 6 HOH A 49 549 74 HOH HOH . 
K 6 HOH A 50 550 76 HOH HOH . 
K 6 HOH A 51 551 78 HOH HOH . 
K 6 HOH A 52 552 79 HOH HOH . 
K 6 HOH A 53 553 80 HOH HOH . 
K 6 HOH A 54 554 81 HOH HOH . 
K 6 HOH A 55 555 84 HOH HOH . 
K 6 HOH A 56 556 85 HOH HOH . 
K 6 HOH A 57 557 87 HOH HOH . 
K 6 HOH A 58 558 89 HOH HOH . 
K 6 HOH A 59 559 91 HOH HOH . 
K 6 HOH A 60 560 92 HOH HOH . 
K 6 HOH A 61 561 93 HOH HOH . 
K 6 HOH A 62 562 94 HOH HOH . 
K 6 HOH A 63 563 97 HOH HOH . 
K 6 HOH A 64 564 98 HOH HOH . 
K 6 HOH A 65 565 102 HOH HOH . 
K 6 HOH A 66 566 103 HOH HOH . 
K 6 HOH A 67 567 107 HOH HOH . 
K 6 HOH A 68 568 108 HOH HOH . 
K 6 HOH A 69 569 110 HOH HOH . 
K 6 HOH A 70 570 111 HOH HOH . 
K 6 HOH A 71 571 112 HOH HOH . 
K 6 HOH A 72 572 114 HOH HOH . 
K 6 HOH A 73 573 119 HOH HOH . 
K 6 HOH A 74 574 121 HOH HOH . 
K 6 HOH A 75 575 122 HOH HOH . 
K 6 HOH A 76 576 123 HOH HOH . 
K 6 HOH A 77 577 124 HOH HOH . 
K 6 HOH A 78 578 128 HOH HOH . 
K 6 HOH A 79 579 130 HOH HOH . 
K 6 HOH A 80 580 139 HOH HOH . 
K 6 HOH A 81 581 141 HOH HOH . 
K 6 HOH A 82 582 149 HOH HOH . 
K 6 HOH A 83 583 150 HOH HOH . 
K 6 HOH A 84 584 151 HOH HOH . 
K 6 HOH A 85 585 152 HOH HOH . 
K 6 HOH A 86 586 153 HOH HOH . 
K 6 HOH A 87 587 154 HOH HOH . 
K 6 HOH A 88 588 155 HOH HOH . 
K 6 HOH A 89 589 159 HOH HOH . 
K 6 HOH A 90 590 163 HOH HOH . 
K 6 HOH A 91 591 166 HOH HOH . 
K 6 HOH A 92 592 167 HOH HOH . 
K 6 HOH A 93 593 169 HOH HOH . 
K 6 HOH A 94 594 170 HOH HOH . 
K 6 HOH A 95 595 173 HOH HOH . 
K 6 HOH A 96 596 175 HOH HOH . 
K 6 HOH A 97 597 176 HOH HOH . 
K 6 HOH A 98 598 177 HOH HOH . 
K 6 HOH A 99 599 178 HOH HOH . 
K 6 HOH A 100 600 179 HOH HOH . 
K 6 HOH A 101 601 180 HOH HOH . 
K 6 HOH A 102 602 181 HOH HOH . 
K 6 HOH A 103 603 184 HOH HOH . 
K 6 HOH A 104 604 185 HOH HOH . 
K 6 HOH A 105 605 186 HOH HOH . 
K 6 HOH A 106 606 188 HOH HOH . 
K 6 HOH A 107 607 189 HOH HOH . 
K 6 HOH A 108 608 193 HOH HOH . 
K 6 HOH A 109 609 201 HOH HOH . 
K 6 HOH A 110 610 204 HOH HOH . 
K 6 HOH A 111 611 207 HOH HOH . 
K 6 HOH A 112 612 208 HOH HOH . 
K 6 HOH A 113 613 209 HOH HOH . 
K 6 HOH A 114 614 216 HOH HOH . 
K 6 HOH A 115 615 220 HOH HOH . 
K 6 HOH A 116 616 221 HOH HOH . 
K 6 HOH A 117 617 224 HOH HOH . 
K 6 HOH A 118 618 225 HOH HOH . 
K 6 HOH A 119 619 227 HOH HOH . 
K 6 HOH A 120 620 228 HOH HOH . 
K 6 HOH A 121 621 229 HOH HOH . 
K 6 HOH A 122 622 231 HOH HOH . 
K 6 HOH A 123 623 232 HOH HOH . 
K 6 HOH A 124 624 235 HOH HOH . 
K 6 HOH A 125 625 236 HOH HOH . 
K 6 HOH A 126 626 237 HOH HOH . 
K 6 HOH A 127 627 238 HOH HOH . 
K 6 HOH A 128 628 239 HOH HOH . 
K 6 HOH A 129 629 241 HOH HOH . 
K 6 HOH A 130 630 243 HOH HOH . 
K 6 HOH A 131 631 247 HOH HOH . 
K 6 HOH A 132 632 248 HOH HOH . 
K 6 HOH A 133 633 249 HOH HOH . 
K 6 HOH A 134 634 251 HOH HOH . 
K 6 HOH A 135 635 252 HOH HOH . 
K 6 HOH A 136 636 253 HOH HOH . 
K 6 HOH A 137 637 254 HOH HOH . 
K 6 HOH A 138 638 256 HOH HOH . 
K 6 HOH A 139 639 257 HOH HOH . 
K 6 HOH A 140 640 258 HOH HOH . 
K 6 HOH A 141 641 259 HOH HOH . 
K 6 HOH A 142 642 260 HOH HOH . 
K 6 HOH A 143 643 261 HOH HOH . 
K 6 HOH A 144 644 262 HOH HOH . 
K 6 HOH A 145 645 265 HOH HOH . 
K 6 HOH A 146 646 266 HOH HOH . 
K 6 HOH A 147 647 267 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 EEM . . . B 2 -0.266 34.244 -44.279 1 18.61 ? C2 EEM 401 A 1 
HETATM 2 N N3 EEM . . . B 2 -0.562 34.042 -45.607 1 18.82 ? N3 EEM 401 A 1 
HETATM 3 C C4 EEM . . . B 2 0.161 33.151 -46.332 1 19.28 ? C4 EEM 401 A 1 
HETATM 4 C C1' EEM . . . B 2 -0.902 33.317 -48.58 1 20.82 ? C1' EEM 401 A 1 
HETATM 5 C C2' EEM . . . B 2 -0.37 33.503 -49.993 1 21.3 ? C2' EEM 401 A 1 
HETATM 6 C C3' EEM . . . B 2 -1.661 33.468 -50.783 1 21.54 ? C3' EEM 401 A 1 
HETATM 7 C C4' EEM . . . B 2 -2.581 32.562 -49.975 1 22.43 ? C4' EEM 401 A 1 
HETATM 8 C C5' EEM . . . B 2 -2.775 31.177 -50.596 1 23.55 ? C5' EEM 401 A 1 
HETATM 9 O O EEM . . . B 2 0.287 32.369 -53.62 1 22.97 ? O EEM 401 A 1 
HETATM 10 C C EEM . . . B 2 -0.808 32.125 -54.148 1 23.15 ? C EEM 401 A 1 
HETATM 11 O OXT EEM . . . B 2 -1.63 33.042 -54.244 1 22.24 ? OXT EEM 401 A 1 
HETATM 12 C CA EEM . . . B 2 -1.149 30.737 -54.687 1 23.3 ? CA EEM 401 A 1 
HETATM 13 N N EEM . . . B 2 0.072 29.924 -54.952 1 23.44 ? N EEM 401 A 1 
HETATM 14 C CB EEM . . . B 2 -2.137 30.007 -53.766 1 24.1 ? CB EEM 401 A 1 
HETATM 15 C CG EEM . . . B 2 -1.593 29.194 -52.592 1 24.44 ? CG EEM 401 A 1 
HETATM 16 SE SE EEM . . . B 2 -1.099 30.285 -51.054 0.98 25.77 ? SE EEM 401 A 1 
HETATM 17 C CE EEM . . . B 2 -1.011 28.971 -49.653 1 26.2 ? CE EEM 401 A 1 
HETATM 18 O O4' EEM . . . B 2 -1.996 32.43 -48.691 1 21.41 ? O4' EEM 401 A 1 
HETATM 19 O O3' EEM . . . B 2 -2.202 34.764 -50.884 1 21.37 ? O3' EEM 401 A 1 
HETATM 20 O O2' EEM . . . B 2 0.359 34.697 -50.163 1 21.09 ? O2' EEM 401 A 1 
HETATM 21 N N9 EEM . . . B 2 0.081 32.773 -47.638 1 20.12 ? N9 EEM 401 A 1 
HETATM 22 C C8 EEM . . . B 2 1.05 31.826 -47.87 1 19.87 ? C8 EEM 401 A 1 
HETATM 23 N N7 EEM . . . B 2 1.717 31.631 -46.712 1 19.36 ? N7 EEM 401 A 1 
HETATM 24 C C5 EEM . . . B 2 1.194 32.425 -45.761 1 19.02 ? C5 EEM 401 A 1 
HETATM 25 N N1 EEM . . . B 2 0.763 33.53 -43.696 1 18.65 ? N1 EEM 401 A 1 
HETATM 26 C C6 EEM . . . B 2 1.502 32.619 -44.422 1 19.06 ? C6 EEM 401 A 1 
HETATM 27 N N6 EEM . . . B 2 2.494 31.942 -43.844 1 19.08 ? N6 EEM 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#