data_4RH1 # _model_server_result.job_id DrKAxMlTHfP4yMZPFO6s0w _model_server_result.datetime_utc '2024-11-20 13:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RH1 # _exptl.entry_id 4RH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RH1 _cell.length_a 53.44 _cell.length_b 58.56 _cell.length_c 130.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 117 A CYS 90 1_555 B FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A SG CYS 121 A CYS 94 1_555 B FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 A SG CYS 124 A CYS 97 1_555 B FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 B FE2 SF4 . A SF4 401 1_555 C O EEM . A EEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 B FE2 SF4 . A SF4 401 1_555 C N EEM . A EEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 407 n n FE1 S3 SF4 sing 408 n n FE1 S4 SF4 sing 409 n n FE2 S1 SF4 sing 410 n n FE2 S3 SF4 sing 411 n n FE2 S4 SF4 sing 412 n n FE3 S1 SF4 sing 413 n n FE3 S2 SF4 sing 414 n n FE3 S4 SF4 sing 415 n n FE4 S1 SF4 sing 416 n n FE4 S2 SF4 sing 417 n n FE4 S3 SF4 sing 418 n n # _atom_sites.entry_id 4RH1 _atom_sites.fract_transf_matrix[1][1] 0.018713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 401 1 SF4 SF4 . C 3 EEM A 1 402 1 EEM EEM . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 3 SO4 SO4 . F 4 SO4 A 1 405 4 SO4 SO4 . G 4 SO4 A 1 406 5 SO4 SO4 . H 4 SO4 A 1 407 7 SO4 SO4 . I 4 SO4 A 1 408 9 SO4 SO4 . J 5 0TT A 1 409 1 0TT SP . K 6 HOH A 1 501 3 HOH HOH . K 6 HOH A 2 502 6 HOH HOH . K 6 HOH A 3 503 7 HOH HOH . K 6 HOH A 4 504 10 HOH HOH . K 6 HOH A 5 505 12 HOH HOH . K 6 HOH A 6 506 15 HOH HOH . K 6 HOH A 7 507 18 HOH HOH . K 6 HOH A 8 508 26 HOH HOH . K 6 HOH A 9 509 29 HOH HOH . K 6 HOH A 10 510 32 HOH HOH . K 6 HOH A 11 511 37 HOH HOH . K 6 HOH A 12 512 39 HOH HOH . K 6 HOH A 13 513 42 HOH HOH . K 6 HOH A 14 514 43 HOH HOH . K 6 HOH A 15 515 44 HOH HOH . K 6 HOH A 16 516 45 HOH HOH . K 6 HOH A 17 517 47 HOH HOH . K 6 HOH A 18 518 48 HOH HOH . K 6 HOH A 19 519 49 HOH HOH . K 6 HOH A 20 520 51 HOH HOH . K 6 HOH A 21 521 52 HOH HOH . K 6 HOH A 22 522 53 HOH HOH . K 6 HOH A 23 523 55 HOH HOH . K 6 HOH A 24 524 56 HOH HOH . K 6 HOH A 25 525 58 HOH HOH . K 6 HOH A 26 526 63 HOH HOH . K 6 HOH A 27 527 64 HOH HOH . K 6 HOH A 28 528 65 HOH HOH . K 6 HOH A 29 529 66 HOH HOH . K 6 HOH A 30 530 67 HOH HOH . K 6 HOH A 31 531 68 HOH HOH . K 6 HOH A 32 532 69 HOH HOH . K 6 HOH A 33 533 70 HOH HOH . K 6 HOH A 34 534 71 HOH HOH . K 6 HOH A 35 535 73 HOH HOH . K 6 HOH A 36 536 74 HOH HOH . K 6 HOH A 37 537 75 HOH HOH . K 6 HOH A 38 538 76 HOH HOH . K 6 HOH A 39 539 77 HOH HOH . K 6 HOH A 40 540 78 HOH HOH . K 6 HOH A 41 541 79 HOH HOH . K 6 HOH A 42 542 80 HOH HOH . K 6 HOH A 43 543 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 -30.532 -1.167 18.113 1 41.85 ? FE1 SF4 401 A 1 HETATM 2 FE FE2 SF4 . . . B 2 -28.569 -2.521 16.043 1 39.41 ? FE2 SF4 401 A 1 HETATM 3 FE FE3 SF4 . . . B 2 -30.814 -0.589 15.102 1 39.16 ? FE3 SF4 401 A 1 HETATM 4 FE FE4 SF4 . . . B 2 -31.51 -3.435 16.233 1 41.06 ? FE4 SF4 401 A 1 HETATM 5 S S1 SF4 . . . B 2 -30.247 -2.612 14.722 1 38.52 ? S1 SF4 401 A 1 HETATM 6 S S2 SF4 . . . B 2 -32.043 -1.413 16.64 1 38.18 ? S2 SF4 401 A 1 HETATM 7 S S3 SF4 . . . B 2 -29.893 -3.139 17.601 1 38.3 ? S3 SF4 401 A 1 HETATM 8 S S4 SF4 . . . B 2 -29.235 -0.552 16.537 1 39.88 ? S4 SF4 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #