data_4RH7 # _model_server_result.job_id DkJ3DxOX9iPCnhafmWGjLg _model_server_result.datetime_utc '2024-11-22 13:46:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rh7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4401}' # _entry.id 4RH7 # _exptl.entry_id 4RH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 544.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADP ORTHOVANADATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RH7 _cell.length_a 136.03 _cell.length_b 487.15 _cell.length_c 276.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 838 A THR 1696 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A OD1 ASP 883 A ASP 1741 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 A OD2 ASP 883 A ASP 1741 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc4 A OG SER 1128 A SER 1986 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc5 A OE2 GLU 1237 A GLU 2095 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 B O4G AOV . A AOV 4401 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 B O2B AOV . A AOV 4401 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 D O3G ATP . A ATP 4403 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 D O2B ATP . A ATP 4403 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C10 H17 N5 O14 P2 V' _chem_comp.formula_weight 544.156 _chem_comp.id AOV _chem_comp.mon_nstd_flag . _chem_comp.name 'ADP ORTHOVANADATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B AOV doub 57 n n PB O2B AOV sing 58 n n PB O3B AOV sing 59 n n PB O3A AOV sing 60 n n O3B VG AOV sing 61 n n PA O1A AOV doub 62 n n PA O2A AOV sing 63 n n PA O3A AOV sing 64 n n PA O5' AOV sing 65 n n O5' C5' AOV sing 66 n n C5' C4' AOV sing 67 n n C4' O4' AOV sing 68 n n C4' C3' AOV sing 69 n n O4' C1' AOV sing 70 n n C3' O3' AOV sing 71 n n C3' C2' AOV sing 72 n n C2' O2' AOV sing 73 n n C2' C1' AOV sing 74 n n C1' N9 AOV sing 75 n n N9 C8 AOV sing 76 n y N9 C4 AOV sing 77 n y C8 N7 AOV doub 78 n y N7 C5 AOV sing 79 n y C5 C6 AOV sing 80 n y C5 C4 AOV doub 81 n y C6 N6 AOV sing 82 n n C6 N1 AOV doub 83 n y N1 C2 AOV sing 84 n y C2 N3 AOV doub 85 n y N3 C4 AOV sing 86 n y VG O1G AOV doub 87 n n VG O2G AOV sing 88 n n VG O3G AOV sing 89 n n VG O4G AOV sing 90 n n O2B H2B AOV sing 91 n n O2A H2A AOV sing 92 n n C5' "H5'1" AOV sing 93 n n C5' "H5'2" AOV sing 94 n n C4' H4' AOV sing 95 n n C3' H3' AOV sing 96 n n C1' H1' AOV sing 97 n n O3' HA AOV sing 98 n n C2' H2' AOV sing 99 n n O2' HB AOV sing 100 n n C8 H8 AOV sing 101 n n N6 H61N AOV sing 102 n n N6 H62N AOV sing 103 n n C2 H2 AOV sing 104 n n O2G H2G1 AOV sing 105 n n O3G H3G1 AOV sing 106 n n O4G H4G1 AOV sing 107 n n # _atom_sites.entry_id 4RH7 _atom_sites.fract_transf_matrix[1][1] 0.007351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AOV A 1 4401 100 AOV AV5 . C 3 MG A 1 4402 101 MG MG . D 4 ATP A 1 4403 200 ATP ATP . E 3 MG A 1 4404 201 MG MG . F 5 ADP A 1 4405 300 ADP ADP . G 5 ADP A 1 4406 400 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB AOV . . . B 2 -35.939 378.489 26.855 1 64.44 ? PB AOV 4401 A 1 HETATM 2 O O1B AOV . . . B 2 -35.969 377.63 25.629 1 69.59 ? O1B AOV 4401 A 1 HETATM 3 O O2B AOV . . . B 2 -36.562 377.792 28.022 1 56.29 ? O2B AOV 4401 A 1 HETATM 4 O O3B AOV . . . B 2 -34.427 378.82 27.212 1 62.05 ? O3B AOV 4401 A 1 HETATM 5 P PA AOV . . . B 2 -37.224 380.732 27.538 1 66.29 ? PA AOV 4401 A 1 HETATM 6 O O1A AOV . . . B 2 -38.485 379.986 27.842 1 69.08 ? O1A AOV 4401 A 1 HETATM 7 O O2A AOV . . . B 2 -36.283 380.889 28.725 1 65.75 ? O2A AOV 4401 A 1 HETATM 8 O O3A AOV . . . B 2 -36.566 379.871 26.411 1 63.34 ? O3A AOV 4401 A 1 HETATM 9 O O5' AOV . . . B 2 -37.593 382.118 26.847 1 67.11 ? O5' AOV 4401 A 1 HETATM 10 C C5' AOV . . . B 2 -36.539 382.78 26.172 1 68.66 ? C5' AOV 4401 A 1 HETATM 11 C C4' AOV . . . B 2 -37.02 384.127 25.698 1 69.78 ? C4' AOV 4401 A 1 HETATM 12 O O4' AOV . . . B 2 -37.899 383.943 24.594 1 63.34 ? O4' AOV 4401 A 1 HETATM 13 C C3' AOV . . . B 2 -37.772 384.857 26.798 1 73.18 ? C3' AOV 4401 A 1 HETATM 14 O O3' AOV . . . B 2 -37.221 386.169 26.979 1 78.18 ? O3' AOV 4401 A 1 HETATM 15 C C2' AOV . . . B 2 -39.192 384.883 26.289 1 71.69 ? C2' AOV 4401 A 1 HETATM 16 O O2' AOV . . . B 2 -39.874 386.069 26.683 1 72.76 ? O2' AOV 4401 A 1 HETATM 17 C C1' AOV . . . B 2 -38.998 384.811 24.797 1 71.92 ? C1' AOV 4401 A 1 HETATM 18 N N9 AOV . . . B 2 -40.217 384.257 24.214 1 80.39 ? N9 AOV 4401 A 1 HETATM 19 C C8 AOV . . . B 2 -40.375 382.977 23.902 1 81.86 ? C8 AOV 4401 A 1 HETATM 20 N N7 AOV . . . B 2 -41.611 382.761 23.384 1 84.61 ? N7 AOV 4401 A 1 HETATM 21 C C5 AOV . . . B 2 -42.276 383.924 23.35 1 85.61 ? C5 AOV 4401 A 1 HETATM 22 C C6 AOV . . . B 2 -43.618 384.383 22.912 1 84.14 ? C6 AOV 4401 A 1 HETATM 23 N N6 AOV . . . B 2 -44.508 383.516 22.399 1 85.03 ? N6 AOV 4401 A 1 HETATM 24 N N1 AOV . . . B 2 -43.926 385.689 23.056 1 86.75 ? N1 AOV 4401 A 1 HETATM 25 C C2 AOV . . . B 2 -43.042 386.56 23.576 1 90.3 ? C2 AOV 4401 A 1 HETATM 26 N N3 AOV . . . B 2 -41.803 386.203 23.991 1 93.06 ? N3 AOV 4401 A 1 HETATM 27 C C4 AOV . . . B 2 -41.35 384.919 23.912 1 88.82 ? C4 AOV 4401 A 1 HETATM 28 V VG AOV . . . B 2 -33.399 377.152 27.47 1 55.66 ? VG AOV 4401 A 1 HETATM 29 O O1G AOV . . . B 2 -33.467 376.654 25.434 1 47.17 ? O1G AOV 4401 A 1 HETATM 30 O O2G AOV . . . B 2 -32.339 375.408 27.744 1 52.54 ? O2G AOV 4401 A 1 HETATM 31 O O3G AOV . . . B 2 -31.704 378.291 27.917 1 56.99 ? O3G AOV 4401 A 1 HETATM 32 O O4G AOV . . . B 2 -34.815 376.526 28.903 1 41.89 ? O4G AOV 4401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #