data_4RH7 # _model_server_result.job_id 9tdrkMVfENLZDa3Yt5d7eQ _model_server_result.datetime_utc '2024-11-22 13:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rh7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":4403}' # _entry.id 4RH7 # _exptl.entry_id 4RH7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RH7 _cell.length_a 136.03 _cell.length_b 487.15 _cell.length_c 276.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RH7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 838 A THR 1696 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A OD1 ASP 883 A ASP 1741 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc3 A OD2 ASP 883 A ASP 1741 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc4 A OG SER 1128 A SER 1986 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc5 A OE2 GLU 1237 A GLU 2095 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 B O4G AOV . A AOV 4401 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc7 B O2B AOV . A AOV 4401 1_555 C MG MG . A MG 4402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 D O3G ATP . A ATP 4403 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc9 D O2B ATP . A ATP 4403 1_555 E MG MG . A MG 4404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 165 n n PG O2G ATP sing 166 n n PG O3G ATP sing 167 n n PG O3B ATP sing 168 n n O2G HOG2 ATP sing 169 n n O3G HOG3 ATP sing 170 n n PB O1B ATP doub 171 n n PB O2B ATP sing 172 n n PB O3B ATP sing 173 n n PB O3A ATP sing 174 n n O2B HOB2 ATP sing 175 n n PA O1A ATP doub 176 n n PA O2A ATP sing 177 n n PA O3A ATP sing 178 n n PA O5' ATP sing 179 n n O2A HOA2 ATP sing 180 n n O5' C5' ATP sing 181 n n C5' C4' ATP sing 182 n n C5' "H5'1" ATP sing 183 n n C5' "H5'2" ATP sing 184 n n C4' O4' ATP sing 185 n n C4' C3' ATP sing 186 n n C4' H4' ATP sing 187 n n O4' C1' ATP sing 188 n n C3' O3' ATP sing 189 n n C3' C2' ATP sing 190 n n C3' H3' ATP sing 191 n n O3' HO3' ATP sing 192 n n C2' O2' ATP sing 193 n n C2' C1' ATP sing 194 n n C2' H2' ATP sing 195 n n O2' HO2' ATP sing 196 n n C1' N9 ATP sing 197 n n C1' H1' ATP sing 198 n n N9 C8 ATP sing 199 n y N9 C4 ATP sing 200 n y C8 N7 ATP doub 201 n y C8 H8 ATP sing 202 n n N7 C5 ATP sing 203 n y C5 C6 ATP sing 204 n y C5 C4 ATP doub 205 n y C6 N6 ATP sing 206 n n C6 N1 ATP doub 207 n y N6 HN61 ATP sing 208 n n N6 HN62 ATP sing 209 n n N1 C2 ATP sing 210 n y C2 N3 ATP doub 211 n y C2 H2 ATP sing 212 n n N3 C4 ATP sing 213 n y # _atom_sites.entry_id 4RH7 _atom_sites.fract_transf_matrix[1][1] 0.007351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AOV A 1 4401 100 AOV AV5 . C 3 MG A 1 4402 101 MG MG . D 4 ATP A 1 4403 200 ATP ATP . E 3 MG A 1 4404 201 MG MG . F 5 ADP A 1 4405 300 ADP ADP . G 5 ADP A 1 4406 400 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 -6.945 388.39 31.753 1 54.14 ? PG ATP 4403 A 1 HETATM 2 O O1G ATP . . . D 4 -6.973 387.183 30.877 1 52.26 ? O1G ATP 4403 A 1 HETATM 3 O O2G ATP . . . D 4 -5.683 388.542 32.554 1 53.89 ? O2G ATP 4403 A 1 HETATM 4 O O3G ATP . . . D 4 -8.195 388.584 32.564 1 49.48 ? O3G ATP 4403 A 1 HETATM 5 P PB ATP . . . D 4 -7.337 390.97 31.339 1 55.34 ? PB ATP 4403 A 1 HETATM 6 O O1B ATP . . . D 4 -8.723 391.277 30.935 1 51.61 ? O1B ATP 4403 A 1 HETATM 7 O O2B ATP . . . D 4 -7.071 390.869 32.825 1 54.64 ? O2B ATP 4403 A 1 HETATM 8 O O3B ATP . . . D 4 -6.912 389.591 30.687 1 54.54 ? O3B ATP 4403 A 1 HETATM 9 P PA ATP . . . D 4 -6.155 393.301 31.619 1 59.44 ? PA ATP 4403 A 1 HETATM 10 O O1A ATP . . . D 4 -7.525 393.912 31.688 1 61 ? O1A ATP 4403 A 1 HETATM 11 O O2A ATP . . . D 4 -5.431 392.901 32.884 1 53.33 ? O2A ATP 4403 A 1 HETATM 12 O O3A ATP . . . D 4 -6.345 392.025 30.675 1 54.24 ? O3A ATP 4403 A 1 HETATM 13 O O5' ATP . . . D 4 -5.211 394.343 30.856 1 65.05 ? O5' ATP 4403 A 1 HETATM 14 C C5' ATP . . . D 4 -3.95 393.892 30.395 1 72.57 ? C5' ATP 4403 A 1 HETATM 15 C C4' ATP . . . D 4 -2.789 394.839 30.663 1 80.31 ? C4' ATP 4403 A 1 HETATM 16 O O4' ATP . . . D 4 -3.107 396.112 30.116 1 80.98 ? O4' ATP 4403 A 1 HETATM 17 C C3' ATP . . . D 4 -2.456 394.999 32.146 1 86.76 ? C3' ATP 4403 A 1 HETATM 18 O O3' ATP . . . D 4 -1.039 394.821 32.388 1 85.05 ? O3' ATP 4403 A 1 HETATM 19 C C2' ATP . . . D 4 -2.949 396.398 32.456 1 88.9 ? C2' ATP 4403 A 1 HETATM 20 O O2' ATP . . . D 4 -2.145 396.989 33.464 1 97.1 ? O2' ATP 4403 A 1 HETATM 21 C C1' ATP . . . D 4 -2.84 397.098 31.102 1 88.65 ? C1' ATP 4403 A 1 HETATM 22 N N9 ATP . . . D 4 -3.835 398.136 30.845 1 87.88 ? N9 ATP 4403 A 1 HETATM 23 C C8 ATP . . . D 4 -5.14 398.021 31.078 1 86.34 ? C8 ATP 4403 A 1 HETATM 24 N N7 ATP . . . D 4 -5.776 399.152 30.71 1 87.92 ? N7 ATP 4403 A 1 HETATM 25 C C5 ATP . . . D 4 -4.858 399.994 30.215 1 90.98 ? C5 ATP 4403 A 1 HETATM 26 C C6 ATP . . . D 4 -4.85 401.354 29.645 1 97.52 ? C6 ATP 4403 A 1 HETATM 27 N N6 ATP . . . D 4 -6.002 402.041 29.539 1 108.01 ? N6 ATP 4403 A 1 HETATM 28 N N1 ATP . . . D 4 -3.686 401.897 29.243 1 95.6 ? N1 ATP 4403 A 1 HETATM 29 C C2 ATP . . . D 4 -2.541 401.217 29.357 1 98.82 ? C2 ATP 4403 A 1 HETATM 30 N N3 ATP . . . D 4 -2.478 399.971 29.872 1 96.94 ? N3 ATP 4403 A 1 HETATM 31 C C4 ATP . . . D 4 -3.577 399.313 30.301 1 90.25 ? C4 ATP 4403 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #