data_4RHE # _model_server_result.job_id RYTAyFxmcB0H6_2gwuWs5A _model_server_result.datetime_utc '2025-03-01 19:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 4RHE # _exptl.entry_id 4RHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RHE _cell.length_a 107.204 _cell.length_b 141.908 _cell.length_c 170.069 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 R N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4RHE _atom_sites.fract_transf_matrix[1][1] 0.009328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FMN A 1 301 1 FMN FMN . H 3 SO4 A 1 302 4 SO4 SO4 . I 3 SO4 A 1 303 6 SO4 SO4 . J 2 FMN B 1 301 2 FMN FMN . K 3 SO4 B 1 302 2 SO4 SO4 . L 3 SO4 B 1 303 3 SO4 SO4 . M 2 FMN C 1 301 3 FMN FMN . N 3 SO4 C 1 302 5 SO4 SO4 . O 2 FMN D 1 301 4 FMN FMN . P 2 FMN E 1 301 5 FMN FMN . Q 3 SO4 E 1 302 1 SO4 SO4 . R 2 FMN F 1 301 6 FMN FMN . S 4 HOH A 1 401 1 HOH HOH . S 4 HOH A 2 402 17 HOH HOH . S 4 HOH A 3 403 20 HOH HOH . S 4 HOH A 4 404 21 HOH HOH . S 4 HOH A 5 405 26 HOH HOH . S 4 HOH A 6 406 38 HOH HOH . S 4 HOH A 7 407 46 HOH HOH . S 4 HOH A 8 408 53 HOH HOH . S 4 HOH A 9 409 56 HOH HOH . S 4 HOH A 10 410 60 HOH HOH . S 4 HOH A 11 411 61 HOH HOH . S 4 HOH A 12 412 65 HOH HOH . S 4 HOH A 13 413 67 HOH HOH . S 4 HOH A 14 414 70 HOH HOH . S 4 HOH A 15 415 81 HOH HOH . S 4 HOH A 16 416 98 HOH HOH . S 4 HOH A 17 417 114 HOH HOH . S 4 HOH A 18 418 117 HOH HOH . S 4 HOH A 19 419 124 HOH HOH . S 4 HOH A 20 420 125 HOH HOH . S 4 HOH A 21 421 129 HOH HOH . S 4 HOH A 22 422 132 HOH HOH . S 4 HOH A 23 423 135 HOH HOH . S 4 HOH A 24 424 138 HOH HOH . S 4 HOH A 25 425 143 HOH HOH . S 4 HOH A 26 426 153 HOH HOH . S 4 HOH A 27 427 157 HOH HOH . S 4 HOH A 28 428 166 HOH HOH . S 4 HOH A 29 429 172 HOH HOH . S 4 HOH A 30 430 175 HOH HOH . S 4 HOH A 31 431 196 HOH HOH . S 4 HOH A 32 432 203 HOH HOH . T 4 HOH B 1 401 7 HOH HOH . T 4 HOH B 2 402 16 HOH HOH . T 4 HOH B 3 403 19 HOH HOH . T 4 HOH B 4 404 22 HOH HOH . T 4 HOH B 5 405 23 HOH HOH . T 4 HOH B 6 406 28 HOH HOH . T 4 HOH B 7 407 29 HOH HOH . T 4 HOH B 8 408 30 HOH HOH . T 4 HOH B 9 409 32 HOH HOH . T 4 HOH B 10 410 33 HOH HOH . T 4 HOH B 11 411 36 HOH HOH . T 4 HOH B 12 412 37 HOH HOH . T 4 HOH B 13 413 39 HOH HOH . T 4 HOH B 14 414 43 HOH HOH . T 4 HOH B 15 415 44 HOH HOH . T 4 HOH B 16 416 49 HOH HOH . T 4 HOH B 17 417 51 HOH HOH . T 4 HOH B 18 418 55 HOH HOH . T 4 HOH B 19 419 57 HOH HOH . T 4 HOH B 20 420 73 HOH HOH . T 4 HOH B 21 421 80 HOH HOH . T 4 HOH B 22 422 86 HOH HOH . T 4 HOH B 23 423 90 HOH HOH . T 4 HOH B 24 424 92 HOH HOH . T 4 HOH B 25 425 99 HOH HOH . T 4 HOH B 26 426 104 HOH HOH . T 4 HOH B 27 427 108 HOH HOH . T 4 HOH B 28 428 110 HOH HOH . T 4 HOH B 29 429 111 HOH HOH . T 4 HOH B 30 430 122 HOH HOH . T 4 HOH B 31 431 127 HOH HOH . T 4 HOH B 32 432 137 HOH HOH . T 4 HOH B 33 433 142 HOH HOH . T 4 HOH B 34 434 148 HOH HOH . T 4 HOH B 35 435 151 HOH HOH . T 4 HOH B 36 436 152 HOH HOH . T 4 HOH B 37 437 154 HOH HOH . T 4 HOH B 38 438 155 HOH HOH . T 4 HOH B 39 439 165 HOH HOH . T 4 HOH B 40 440 167 HOH HOH . T 4 HOH B 41 441 173 HOH HOH . T 4 HOH B 42 442 181 HOH HOH . T 4 HOH B 43 443 184 HOH HOH . T 4 HOH B 44 444 186 HOH HOH . T 4 HOH B 45 445 187 HOH HOH . T 4 HOH B 46 446 189 HOH HOH . T 4 HOH B 47 447 192 HOH HOH . T 4 HOH B 48 448 198 HOH HOH . U 4 HOH C 1 401 3 HOH HOH . U 4 HOH C 2 402 4 HOH HOH . U 4 HOH C 3 403 12 HOH HOH . U 4 HOH C 4 404 18 HOH HOH . U 4 HOH C 5 405 27 HOH HOH . U 4 HOH C 6 406 31 HOH HOH . U 4 HOH C 7 407 63 HOH HOH . U 4 HOH C 8 408 66 HOH HOH . U 4 HOH C 9 409 76 HOH HOH . U 4 HOH C 10 410 78 HOH HOH . U 4 HOH C 11 411 79 HOH HOH . U 4 HOH C 12 412 83 HOH HOH . U 4 HOH C 13 413 85 HOH HOH . U 4 HOH C 14 414 89 HOH HOH . U 4 HOH C 15 415 93 HOH HOH . U 4 HOH C 16 416 94 HOH HOH . U 4 HOH C 17 417 115 HOH HOH . U 4 HOH C 18 418 121 HOH HOH . U 4 HOH C 19 419 136 HOH HOH . U 4 HOH C 20 420 140 HOH HOH . U 4 HOH C 21 421 144 HOH HOH . U 4 HOH C 22 422 158 HOH HOH . U 4 HOH C 23 423 171 HOH HOH . U 4 HOH C 24 424 176 HOH HOH . U 4 HOH C 25 425 178 HOH HOH . U 4 HOH C 26 426 179 HOH HOH . U 4 HOH C 27 427 199 HOH HOH . V 4 HOH D 1 401 11 HOH HOH . V 4 HOH D 2 402 34 HOH HOH . V 4 HOH D 3 403 40 HOH HOH . V 4 HOH D 4 404 41 HOH HOH . V 4 HOH D 5 405 48 HOH HOH . V 4 HOH D 6 406 52 HOH HOH . V 4 HOH D 7 407 54 HOH HOH . V 4 HOH D 8 408 59 HOH HOH . V 4 HOH D 9 409 71 HOH HOH . V 4 HOH D 10 410 74 HOH HOH . V 4 HOH D 11 411 75 HOH HOH . V 4 HOH D 12 412 82 HOH HOH . V 4 HOH D 13 413 84 HOH HOH . V 4 HOH D 14 414 87 HOH HOH . V 4 HOH D 15 415 101 HOH HOH . V 4 HOH D 16 416 109 HOH HOH . V 4 HOH D 17 417 113 HOH HOH . V 4 HOH D 18 418 118 HOH HOH . V 4 HOH D 19 419 128 HOH HOH . V 4 HOH D 20 420 131 HOH HOH . V 4 HOH D 21 421 134 HOH HOH . V 4 HOH D 22 422 147 HOH HOH . V 4 HOH D 23 423 156 HOH HOH . V 4 HOH D 24 424 159 HOH HOH . V 4 HOH D 25 425 160 HOH HOH . V 4 HOH D 26 426 162 HOH HOH . V 4 HOH D 27 427 174 HOH HOH . V 4 HOH D 28 428 177 HOH HOH . V 4 HOH D 29 429 180 HOH HOH . V 4 HOH D 30 430 182 HOH HOH . V 4 HOH D 31 431 183 HOH HOH . V 4 HOH D 32 432 193 HOH HOH . V 4 HOH D 33 433 201 HOH HOH . V 4 HOH D 34 434 204 HOH HOH . V 4 HOH D 35 435 205 HOH HOH . V 4 HOH D 36 436 206 HOH HOH . W 4 HOH E 1 401 6 HOH HOH . W 4 HOH E 2 402 8 HOH HOH . W 4 HOH E 3 403 15 HOH HOH . W 4 HOH E 4 404 50 HOH HOH . W 4 HOH E 5 405 58 HOH HOH . W 4 HOH E 6 406 69 HOH HOH . W 4 HOH E 7 407 91 HOH HOH . W 4 HOH E 8 408 96 HOH HOH . W 4 HOH E 9 409 102 HOH HOH . W 4 HOH E 10 410 103 HOH HOH . W 4 HOH E 11 411 106 HOH HOH . W 4 HOH E 12 412 120 HOH HOH . W 4 HOH E 13 413 123 HOH HOH . W 4 HOH E 14 414 126 HOH HOH . W 4 HOH E 15 415 130 HOH HOH . W 4 HOH E 16 416 133 HOH HOH . W 4 HOH E 17 417 139 HOH HOH . W 4 HOH E 18 418 141 HOH HOH . W 4 HOH E 19 419 146 HOH HOH . W 4 HOH E 20 420 163 HOH HOH . W 4 HOH E 21 421 168 HOH HOH . W 4 HOH E 22 422 170 HOH HOH . W 4 HOH E 23 423 185 HOH HOH . W 4 HOH E 24 424 188 HOH HOH . W 4 HOH E 25 425 202 HOH HOH . X 4 HOH F 1 401 9 HOH HOH . X 4 HOH F 2 402 10 HOH HOH . X 4 HOH F 3 403 14 HOH HOH . X 4 HOH F 4 404 25 HOH HOH . X 4 HOH F 5 405 35 HOH HOH . X 4 HOH F 6 406 42 HOH HOH . X 4 HOH F 7 407 47 HOH HOH . X 4 HOH F 8 408 68 HOH HOH . X 4 HOH F 9 409 77 HOH HOH . X 4 HOH F 10 410 88 HOH HOH . X 4 HOH F 11 411 95 HOH HOH . X 4 HOH F 12 412 100 HOH HOH . X 4 HOH F 13 413 107 HOH HOH . X 4 HOH F 14 414 112 HOH HOH . X 4 HOH F 15 415 116 HOH HOH . X 4 HOH F 16 416 119 HOH HOH . X 4 HOH F 17 417 145 HOH HOH . X 4 HOH F 18 418 149 HOH HOH . X 4 HOH F 19 419 161 HOH HOH . X 4 HOH F 20 420 169 HOH HOH . X 4 HOH F 21 421 190 HOH HOH . X 4 HOH F 22 422 191 HOH HOH . X 4 HOH F 23 423 194 HOH HOH . X 4 HOH F 24 424 195 HOH HOH . X 4 HOH F 25 425 197 HOH HOH . X 4 HOH F 26 426 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . J 2 4.872 6.128 -11.726 1 28.5 ? N1 FMN 301 B 1 HETATM 2 C C2 FMN . . . J 2 4.567 5.508 -10.55 1 28.52 ? C2 FMN 301 B 1 HETATM 3 O O2 FMN . . . J 2 3.368 5.204 -10.381 1 26.51 ? O2 FMN 301 B 1 HETATM 4 N N3 FMN . . . J 2 5.513 5.181 -9.607 1 29.26 ? N3 FMN 301 B 1 HETATM 5 C C4 FMN . . . J 2 6.821 5.451 -9.774 1 27.85 ? C4 FMN 301 B 1 HETATM 6 O O4 FMN . . . J 2 7.781 5.073 -9.047 1 23.87 ? O4 FMN 301 B 1 HETATM 7 C C4A FMN . . . J 2 7.199 6.157 -11.009 1 30.3 ? C4A FMN 301 B 1 HETATM 8 N N5 FMN . . . J 2 8.497 6.465 -11.22 1 29.05 ? N5 FMN 301 B 1 HETATM 9 C C5A FMN . . . J 2 8.926 7.016 -12.375 1 32 ? C5A FMN 301 B 1 HETATM 10 C C6 FMN . . . J 2 10.285 7.253 -12.581 1 27.93 ? C6 FMN 301 B 1 HETATM 11 C C7 FMN . . . J 2 10.707 7.856 -13.767 1 31.36 ? C7 FMN 301 B 1 HETATM 12 C C7M FMN . . . J 2 12.182 8.151 -13.975 1 37.8 ? C7M FMN 301 B 1 HETATM 13 C C8 FMN . . . J 2 9.7 8.266 -14.764 1 29.48 ? C8 FMN 301 B 1 HETATM 14 C C8M FMN . . . J 2 10.122 8.94 -16.01 1 35.01 ? C8M FMN 301 B 1 HETATM 15 C C9 FMN . . . J 2 8.347 8.018 -14.563 1 28.69 ? C9 FMN 301 B 1 HETATM 16 C C9A FMN . . . J 2 7.907 7.424 -13.382 1 28.96 ? C9A FMN 301 B 1 HETATM 17 N N10 FMN . . . J 2 6.517 7.125 -13.103 1 29.1 ? N10 FMN 301 B 1 HETATM 18 C C10 FMN . . . J 2 6.134 6.491 -11.955 1 24.8 ? C10 FMN 301 B 1 HETATM 19 C C1' FMN . . . J 2 5.454 7.541 -13.987 1 28.67 ? C1' FMN 301 B 1 HETATM 20 C C2' FMN . . . J 2 5.024 6.536 -14.969 1 27.88 ? C2' FMN 301 B 1 HETATM 21 O O2' FMN . . . J 2 6.159 6.303 -15.759 1 27.75 ? O2' FMN 301 B 1 HETATM 22 C C3' FMN . . . J 2 3.863 7.239 -15.728 1 28.53 ? C3' FMN 301 B 1 HETATM 23 O O3' FMN . . . J 2 2.714 7.296 -14.838 1 26.85 ? O3' FMN 301 B 1 HETATM 24 C C4' FMN . . . J 2 3.615 6.459 -17.032 1 28.55 ? C4' FMN 301 B 1 HETATM 25 O O4' FMN . . . J 2 2.471 6.925 -17.721 1 29.44 ? O4' FMN 301 B 1 HETATM 26 C C5' FMN . . . J 2 3.407 4.976 -16.712 1 29 ? C5' FMN 301 B 1 HETATM 27 O O5' FMN . . . J 2 3.217 4.249 -17.902 1 24.08 ? O5' FMN 301 B 1 HETATM 28 P P FMN . . . J 2 3.188 2.657 -17.882 1 26.57 ? P FMN 301 B 1 HETATM 29 O O1P FMN . . . J 2 2.558 2.41 -19.22 1 26.06 ? O1P FMN 301 B 1 HETATM 30 O O2P FMN . . . J 2 4.578 2.108 -17.787 1 26.3 ? O2P FMN 301 B 1 HETATM 31 O O3P FMN . . . J 2 2.274 2.286 -16.728 1 30.35 -1 O3P FMN 301 B 1 # _model_server_stats.io_time_ms 147 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #