data_4RHT
#
_model_server_result.job_id            '_vzcfWVW1zRqqb4opSZgWA' 
_model_server_result.datetime_utc      '2024-11-08 07:40:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4RHT 
#
_exptl.entry_id    4RHT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RHT 
_cell.length_a            56.417 
_cell.length_b            85.58 
_cell.length_c            156.644 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RHT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 
A,B,E,F,G,H,I,J,K,L,U,V 2 1 
C,D,M,N,O,P,Q,R,S,T,W,X 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 M N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 121 A GLU 122 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc2 A OD1 ASP 122 A ASP 123 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc3 A OD2 ASP 181 A ASP 182 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 E O2 POP . A POP 301 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc5 G MG MG . A MG 303 1_555 U O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc6 G MG MG . A MG 303 1_555 U O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc7 B OE2 GLU 121 B GLU 122 1_555 K MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc8 B OD1 ASP 122 B ASP 123 1_555 K MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc9 B OD2 ASP 181 B ASP 182 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc10 B OD1 ASP 181 B ASP 182 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? 
metalc ? metalc11 I O1 POP . B POP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc12 I O5 POP . B POP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc13 I O3 POP . B POP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc14 K MG MG . B MG 303 1_555 V O HOH . B HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc15 L MG MG . B MG 304 1_555 V O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc16 L MG MG . B MG 304 1_555 V O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc17 C OE2 GLU 121 C GLU 122 1_555 P MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc18 C OD1 ASP 122 C ASP 123 1_555 P MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc19 C OD2 ASP 181 C ASP 182 1_555 O MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc20 M O2 POP . C POP 301 1_555 O MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc21 M O6 POP . C POP 301 1_555 O MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc22 P MG MG . C MG 304 1_555 W O HOH . C HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc23 P MG MG . C MG 304 1_555 W O HOH . C HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc24 D OE1 GLU 121 D GLU 122 1_555 T MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc25 D OD1 ASP 122 D ASP 123 1_555 T MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc26 D OD1 ASP 181 D ASP 182 1_555 S MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc27 Q O4 POP . D POP 301 1_555 S MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc28 Q O1 POP . D POP 301 1_555 S MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc29 T MG MG . D MG 304 1_555 X O HOH . D HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc30 T MG MG . D MG 304 1_555 X O HOH . D HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 300 n n 
P1 O2 POP sing 301 n n 
P1 O3 POP sing 302 n n 
P1 O POP sing 303 n n 
O2 HO2 POP sing 304 n n 
O P2 POP sing 305 n n 
P2 O4 POP doub 306 n n 
P2 O5 POP sing 307 n n 
P2 O6 POP sing 308 n n 
O5 HO5 POP sing 309 n n 
#
_atom_sites.entry_id                     4RHT 
_atom_sites.fract_transf_matrix[1][1]    0.017725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006384 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POP A 1 301 1 POP POP . 
F 3 5GP A 1 302 190 5GP 5GP . 
G 4 MG A 1 303 1 MG MG . 
H 4 MG A 1 304 1 MG MG . 
I 2 POP B 1 301 2 POP POP . 
J 3 5GP B 1 302 191 5GP 5GP . 
K 4 MG B 1 303 1 MG MG . 
L 4 MG B 1 304 1 MG MG . 
M 2 POP C 1 301 3 POP POP . 
N 3 5GP C 1 302 192 5GP 5GP . 
O 4 MG C 1 303 2 MG MG . 
P 4 MG C 1 304 1 MG MG . 
Q 2 POP D 1 301 4 POP POP . 
R 3 5GP D 1 302 193 5GP 5GP . 
S 4 MG D 1 303 1 MG MG . 
T 4 MG D 1 304 1 MG MG . 
U 5 HOH A 1 401 1 HOH HOH . 
U 5 HOH A 2 402 3 HOH HOH . 
U 5 HOH A 3 403 4 HOH HOH . 
U 5 HOH A 4 404 12 HOH HOH . 
U 5 HOH A 5 405 13 HOH HOH . 
U 5 HOH A 6 406 14 HOH HOH . 
U 5 HOH A 7 407 15 HOH HOH . 
U 5 HOH A 8 408 16 HOH HOH . 
U 5 HOH A 9 409 19 HOH HOH . 
U 5 HOH A 10 410 24 HOH HOH . 
U 5 HOH A 11 411 26 HOH HOH . 
U 5 HOH A 12 412 28 HOH HOH . 
U 5 HOH A 13 413 32 HOH HOH . 
U 5 HOH A 14 414 33 HOH HOH . 
U 5 HOH A 15 415 34 HOH HOH . 
U 5 HOH A 16 416 40 HOH HOH . 
U 5 HOH A 17 417 45 HOH HOH . 
V 5 HOH B 1 401 2 HOH HOH . 
V 5 HOH B 2 402 5 HOH HOH . 
V 5 HOH B 3 403 6 HOH HOH . 
V 5 HOH B 4 404 7 HOH HOH . 
V 5 HOH B 5 405 8 HOH HOH . 
V 5 HOH B 6 406 9 HOH HOH . 
V 5 HOH B 7 407 10 HOH HOH . 
V 5 HOH B 8 408 11 HOH HOH . 
V 5 HOH B 9 409 17 HOH HOH . 
V 5 HOH B 10 410 29 HOH HOH . 
V 5 HOH B 11 411 36 HOH HOH . 
V 5 HOH B 12 412 37 HOH HOH . 
V 5 HOH B 13 413 44 HOH HOH . 
V 5 HOH B 14 414 46 HOH HOH . 
V 5 HOH B 15 415 48 HOH HOH . 
V 5 HOH B 16 416 51 HOH HOH . 
W 5 HOH C 1 401 18 HOH HOH . 
W 5 HOH C 2 402 27 HOH HOH . 
W 5 HOH C 3 403 30 HOH HOH . 
W 5 HOH C 4 404 39 HOH HOH . 
W 5 HOH C 5 405 47 HOH HOH . 
X 5 HOH D 1 401 21 HOH HOH . 
X 5 HOH D 2 402 22 HOH HOH . 
X 5 HOH D 3 403 23 HOH HOH . 
X 5 HOH D 4 404 35 HOH HOH . 
X 5 HOH D 5 405 38 HOH HOH . 
X 5 HOH D 6 406 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . E 2 17.904 75.155 22.265 1 66.58 ? P1 POP 301 A 1 
HETATM 2 O O1 POP . . . E 2 18.598 74.028 22.994 1 64.84 ? O1 POP 301 A 1 
HETATM 3 O O2 POP . . . E 2 16.488 75.307 22.77 1 68.89 ? O2 POP 301 A 1 
HETATM 4 O O3 POP . . . E 2 17.877 74.865 20.784 1 69.56 ? O3 POP 301 A 1 
HETATM 5 O O POP . . . E 2 18.717 76.524 22.503 1 172.31 ? O POP 301 A 1 
HETATM 6 P P2 POP . . . E 2 18.75 77.24 23.943 1 75.6 ? P2 POP 301 A 1 
HETATM 7 O O4 POP . . . E 2 19.175 76.236 24.988 1 82.16 ? O4 POP 301 A 1 
HETATM 8 O O5 POP . . . E 2 17.374 77.76 24.279 1 75.98 ? O5 POP 301 A 1 
HETATM 9 O O6 POP . . . E 2 19.738 78.379 23.906 1 78.6 ? O6 POP 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#