data_4RHT
#
_model_server_result.job_id            Pgkp1pBFqoIkjxxvDfz7FA 
_model_server_result.datetime_utc      '2024-11-08 07:36:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":302}' 
#
_entry.id    4RHT 
#
_exptl.entry_id    4RHT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RHT 
_cell.length_a            56.417 
_cell.length_b            85.58 
_cell.length_c            156.644 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RHT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 1 1 
A,B,E,F,G,H,I,J,K,L,U,V 2 1 
C,D,M,N,O,P,Q,R,S,T,W,X 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 N N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 121 A GLU 122 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc2 A OD1 ASP 122 A ASP 123 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc3 A OD2 ASP 181 A ASP 182 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 E O2 POP . A POP 301 1_555 H MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc5 G MG MG . A MG 303 1_555 U O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc6 G MG MG . A MG 303 1_555 U O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc7 B OE2 GLU 121 B GLU 122 1_555 K MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc8 B OD1 ASP 122 B ASP 123 1_555 K MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc9 B OD2 ASP 181 B ASP 182 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc10 B OD1 ASP 181 B ASP 182 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? 
metalc ? metalc11 I O1 POP . B POP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc12 I O5 POP . B POP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc13 I O3 POP . B POP 301 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc14 K MG MG . B MG 303 1_555 V O HOH . B HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc15 L MG MG . B MG 304 1_555 V O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc16 L MG MG . B MG 304 1_555 V O HOH . B HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc17 C OE2 GLU 121 C GLU 122 1_555 P MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc18 C OD1 ASP 122 C ASP 123 1_555 P MG MG . C MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc19 C OD2 ASP 181 C ASP 182 1_555 O MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc20 M O2 POP . C POP 301 1_555 O MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc21 M O6 POP . C POP 301 1_555 O MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc22 P MG MG . C MG 304 1_555 W O HOH . C HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc23 P MG MG . C MG 304 1_555 W O HOH . C HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? 
metalc ? metalc24 D OE1 GLU 121 D GLU 122 1_555 T MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc25 D OD1 ASP 122 D ASP 123 1_555 T MG MG . D MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc26 D OD1 ASP 181 D ASP 182 1_555 S MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc27 Q O4 POP . D POP 301 1_555 S MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc28 Q O1 POP . D POP 301 1_555 S MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc29 T MG MG . D MG 304 1_555 X O HOH . D HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc30 T MG MG . D MG 304 1_555 X O HOH . D HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     4RHT 
_atom_sites.fract_transf_matrix[1][1]    0.017725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006384 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POP A 1 301 1 POP POP . 
F 3 5GP A 1 302 190 5GP 5GP . 
G 4 MG A 1 303 1 MG MG . 
H 4 MG A 1 304 1 MG MG . 
I 2 POP B 1 301 2 POP POP . 
J 3 5GP B 1 302 191 5GP 5GP . 
K 4 MG B 1 303 1 MG MG . 
L 4 MG B 1 304 1 MG MG . 
M 2 POP C 1 301 3 POP POP . 
N 3 5GP C 1 302 192 5GP 5GP . 
O 4 MG C 1 303 2 MG MG . 
P 4 MG C 1 304 1 MG MG . 
Q 2 POP D 1 301 4 POP POP . 
R 3 5GP D 1 302 193 5GP 5GP . 
S 4 MG D 1 303 1 MG MG . 
T 4 MG D 1 304 1 MG MG . 
U 5 HOH A 1 401 1 HOH HOH . 
U 5 HOH A 2 402 3 HOH HOH . 
U 5 HOH A 3 403 4 HOH HOH . 
U 5 HOH A 4 404 12 HOH HOH . 
U 5 HOH A 5 405 13 HOH HOH . 
U 5 HOH A 6 406 14 HOH HOH . 
U 5 HOH A 7 407 15 HOH HOH . 
U 5 HOH A 8 408 16 HOH HOH . 
U 5 HOH A 9 409 19 HOH HOH . 
U 5 HOH A 10 410 24 HOH HOH . 
U 5 HOH A 11 411 26 HOH HOH . 
U 5 HOH A 12 412 28 HOH HOH . 
U 5 HOH A 13 413 32 HOH HOH . 
U 5 HOH A 14 414 33 HOH HOH . 
U 5 HOH A 15 415 34 HOH HOH . 
U 5 HOH A 16 416 40 HOH HOH . 
U 5 HOH A 17 417 45 HOH HOH . 
V 5 HOH B 1 401 2 HOH HOH . 
V 5 HOH B 2 402 5 HOH HOH . 
V 5 HOH B 3 403 6 HOH HOH . 
V 5 HOH B 4 404 7 HOH HOH . 
V 5 HOH B 5 405 8 HOH HOH . 
V 5 HOH B 6 406 9 HOH HOH . 
V 5 HOH B 7 407 10 HOH HOH . 
V 5 HOH B 8 408 11 HOH HOH . 
V 5 HOH B 9 409 17 HOH HOH . 
V 5 HOH B 10 410 29 HOH HOH . 
V 5 HOH B 11 411 36 HOH HOH . 
V 5 HOH B 12 412 37 HOH HOH . 
V 5 HOH B 13 413 44 HOH HOH . 
V 5 HOH B 14 414 46 HOH HOH . 
V 5 HOH B 15 415 48 HOH HOH . 
V 5 HOH B 16 416 51 HOH HOH . 
W 5 HOH C 1 401 18 HOH HOH . 
W 5 HOH C 2 402 27 HOH HOH . 
W 5 HOH C 3 403 30 HOH HOH . 
W 5 HOH C 4 404 39 HOH HOH . 
W 5 HOH C 5 405 47 HOH HOH . 
X 5 HOH D 1 401 21 HOH HOH . 
X 5 HOH D 2 402 22 HOH HOH . 
X 5 HOH D 3 403 23 HOH HOH . 
X 5 HOH D 4 404 35 HOH HOH . 
X 5 HOH D 5 405 38 HOH HOH . 
X 5 HOH D 6 406 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . N 3 44.974 86.301 -0.329 1 153.39 ? P 5GP 302 C 1 
HETATM 2 O O1P 5GP . . . N 3 45.793 85.933 -1.543 1 154.44 ? O1P 5GP 302 C 1 
HETATM 3 O O2P 5GP . . . N 3 44.03 85.215 0.131 1 152.29 ? O2P 5GP 302 C 1 
HETATM 4 O O3P 5GP . . . N 3 45.75 86.952 0.791 1 152.71 ? O3P 5GP 302 C 1 
HETATM 5 O O5' 5GP . . . N 3 44.003 87.45 -0.858 1 119.49 ? O5' 5GP 302 C 1 
HETATM 6 C C5' 5GP . . . N 3 43.831 87.676 -2.25 1 119.14 ? C5' 5GP 302 C 1 
HETATM 7 C C4' 5GP . . . N 3 42.547 87.072 -2.761 1 118.65 ? C4' 5GP 302 C 1 
HETATM 8 O O4' 5GP . . . N 3 42.408 87.363 -4.172 1 118.92 ? O4' 5GP 302 C 1 
HETATM 9 C C3' 5GP . . . N 3 42.46 85.557 -2.69 1 117.65 ? C3' 5GP 302 C 1 
HETATM 10 O O3' 5GP . . . N 3 42.091 85.086 -1.406 1 118.04 ? O3' 5GP 302 C 1 
HETATM 11 C C2' 5GP . . . N 3 41.449 85.218 -3.782 1 116.32 ? C2' 5GP 302 C 1 
HETATM 12 O O2' 5GP . . . N 3 40.121 85.377 -3.306 1 114.28 ? O2' 5GP 302 C 1 
HETATM 13 C C1' 5GP . . . N 3 41.723 86.311 -4.817 1 117.98 ? C1' 5GP 302 C 1 
HETATM 14 N N9 5GP . . . N 3 42.552 85.825 -5.937 1 117.7 ? N9 5GP 302 C 1 
HETATM 15 C C8 5GP . . . N 3 43.426 84.809 -5.908 1 117.02 ? C8 5GP 302 C 1 
HETATM 16 N N7 5GP . . . N 3 43.991 84.681 -7.131 1 116.6 ? N7 5GP 302 C 1 
HETATM 17 C C5 5GP . . . N 3 43.461 85.632 -7.927 1 117.14 ? C5 5GP 302 C 1 
HETATM 18 C C6 5GP . . . N 3 43.648 85.984 -9.257 1 117.36 ? C6 5GP 302 C 1 
HETATM 19 O O6 5GP . . . N 3 44.46 85.354 -9.971 1 117.03 ? O6 5GP 302 C 1 
HETATM 20 N N1 5GP . . . N 3 42.952 87.007 -9.77 1 116.76 ? N1 5GP 302 C 1 
HETATM 21 C C2 5GP . . . N 3 42.079 87.693 -9.018 1 116.58 ? C2 5GP 302 C 1 
HETATM 22 N N2 5GP . . . N 3 41.386 88.723 -9.56 1 115.63 ? N2 5GP 302 C 1 
HETATM 23 N N3 5GP . . . N 3 41.875 87.374 -7.723 1 117.74 ? N3 5GP 302 C 1 
HETATM 24 C C4 5GP . . . N 3 42.558 86.349 -7.164 1 117.68 ? C4 5GP 302 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#