data_4RI2 # _model_server_result.job_id Peddpy6bzl33xFBKHn8gJQ _model_server_result.datetime_utc '2024-11-08 17:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ri2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4RI2 # _exptl.entry_id 4RI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RI2 _cell.length_a 71.999 _cell.length_b 77.537 _cell.length_c 93.184 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 67 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 67 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id H _struct_conn.ptnr2_label_atom_id HG _struct_conn.ptnr2_label_comp_id HG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id HG _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.198 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA CLA sing 121 n n MG NB CLA sing 122 n n MG NC CLA sing 123 n n MG ND CLA sing 124 n n CHA C1A CLA sing 125 n n CHA C4D CLA doub 126 n n CHA CBD CLA sing 127 n n CHB C4A CLA doub 128 n n CHB C1B CLA sing 129 n n CHB HHB CLA sing 130 n n CHC C4B CLA sing 131 n n CHC C1C CLA doub 132 n n CHC HHC CLA sing 133 n n CHD C4C CLA sing 134 n n CHD C1D CLA doub 135 n n CHD HHD CLA sing 136 n n NA C1A CLA doub 137 n n NA C4A CLA sing 138 n n C1A C2A CLA sing 139 n n C2A C3A CLA sing 140 n n C2A CAA CLA sing 141 n n C2A H2A CLA sing 142 n n C3A C4A CLA sing 143 n n C3A CMA CLA sing 144 n n C3A H3A CLA sing 145 n n CMA HMA1 CLA sing 146 n n CMA HMA2 CLA sing 147 n n CMA HMA3 CLA sing 148 n n CAA CBA CLA sing 149 n n CAA HAA1 CLA sing 150 n n CAA HAA2 CLA sing 151 n n CBA CGA CLA sing 152 n n CBA HBA1 CLA sing 153 n n CBA HBA2 CLA sing 154 n n CGA O1A CLA doub 155 n n CGA O2A CLA sing 156 n n O2A C1 CLA sing 157 n n NB C1B CLA sing 158 n y NB C4B CLA sing 159 n y C1B C2B CLA doub 160 n y C2B C3B CLA sing 161 n y C2B CMB CLA sing 162 n n C3B C4B CLA doub 163 n y C3B CAB CLA sing 164 n n CMB HMB1 CLA sing 165 n n CMB HMB2 CLA sing 166 n n CMB HMB3 CLA sing 167 n n CAB CBB CLA doub 168 n n CAB HAB CLA sing 169 n n CBB HBB1 CLA sing 170 n n CBB HBB2 CLA sing 171 n n NC C1C CLA sing 172 n n NC C4C CLA doub 173 n n C1C C2C CLA sing 174 n n C2C C3C CLA doub 175 n n C2C CMC CLA sing 176 n n C3C C4C CLA sing 177 n n C3C CAC CLA sing 178 n n CMC HMC1 CLA sing 179 n n CMC HMC2 CLA sing 180 n n CMC HMC3 CLA sing 181 n n CAC CBC CLA sing 182 n n CAC HAC1 CLA sing 183 n n CAC HAC2 CLA sing 184 n n CBC HBC1 CLA sing 185 n n CBC HBC2 CLA sing 186 n n CBC HBC3 CLA sing 187 n n ND C1D CLA sing 188 n n ND C4D CLA sing 189 n n C1D C2D CLA sing 190 n n C2D C3D CLA doub 191 n n C2D CMD CLA sing 192 n n C3D C4D CLA sing 193 n n C3D CAD CLA sing 194 n n CMD HMD1 CLA sing 195 n n CMD HMD2 CLA sing 196 n n CMD HMD3 CLA sing 197 n n CAD OBD CLA doub 198 n n CAD CBD CLA sing 199 n n CBD CGD CLA sing 200 n n CBD HBD CLA sing 201 n n CGD O1D CLA doub 202 n n CGD O2D CLA sing 203 n n O2D CED CLA sing 204 n n CED HED1 CLA sing 205 n n CED HED2 CLA sing 206 n n CED HED3 CLA sing 207 n n C1 C2 CLA sing 208 n n C1 H11 CLA sing 209 n n C1 H12 CLA sing 210 n n C2 C3 CLA doub 211 e n C2 H2 CLA sing 212 n n C3 C4 CLA sing 213 n n C3 C5 CLA sing 214 n n C4 H41 CLA sing 215 n n C4 H42 CLA sing 216 n n C4 H43 CLA sing 217 n n C5 C6 CLA sing 218 n n C5 H51 CLA sing 219 n n C5 H52 CLA sing 220 n n C6 C7 CLA sing 221 n n C6 H61 CLA sing 222 n n C6 H62 CLA sing 223 n n C7 C8 CLA sing 224 n n C7 H71 CLA sing 225 n n C7 H72 CLA sing 226 n n C8 C9 CLA sing 227 n n C8 C10 CLA sing 228 n n C8 H8 CLA sing 229 n n C9 H91 CLA sing 230 n n C9 H92 CLA sing 231 n n C9 H93 CLA sing 232 n n C10 C11 CLA sing 233 n n C10 H101 CLA sing 234 n n C10 H102 CLA sing 235 n n C11 C12 CLA sing 236 n n C11 H111 CLA sing 237 n n C11 H112 CLA sing 238 n n C12 C13 CLA sing 239 n n C12 H121 CLA sing 240 n n C12 H122 CLA sing 241 n n C13 C14 CLA sing 242 n n C13 C15 CLA sing 243 n n C13 H13 CLA sing 244 n n C14 H141 CLA sing 245 n n C14 H142 CLA sing 246 n n C14 H143 CLA sing 247 n n C15 C16 CLA sing 248 n n C15 H151 CLA sing 249 n n C15 H152 CLA sing 250 n n C16 C17 CLA sing 251 n n C16 H161 CLA sing 252 n n C16 H162 CLA sing 253 n n C17 C18 CLA sing 254 n n C17 H171 CLA sing 255 n n C17 H172 CLA sing 256 n n C18 C19 CLA sing 257 n n C18 C20 CLA sing 258 n n C18 H18 CLA sing 259 n n C19 H191 CLA sing 260 n n C19 H192 CLA sing 261 n n C19 H193 CLA sing 262 n n C20 H201 CLA sing 263 n n C20 H202 CLA sing 264 n n C20 H203 CLA sing 265 n n # _atom_sites.entry_id 4RI2 _atom_sites.fract_transf_matrix[1][1] 0.013889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNG A 1 301 1 BNG BNG . D 2 BNG A 1 302 2 BNG BNG . E 3 CLA B 1 301 1 CLA CLA . F 2 BNG B 1 302 3 BNG BNG . G 2 BNG B 1 303 4 BNG BNG . H 4 HG B 1 304 1 HG HG . I 5 HOH A 1 401 2 HOH HOH . I 5 HOH A 2 402 3 HOH HOH . I 5 HOH A 3 403 4 HOH HOH . I 5 HOH A 4 404 6 HOH HOH . I 5 HOH A 5 405 7 HOH HOH . I 5 HOH A 6 406 10 HOH HOH . I 5 HOH A 7 407 11 HOH HOH . I 5 HOH A 8 408 12 HOH HOH . I 5 HOH A 9 409 14 HOH HOH . I 5 HOH A 10 410 16 HOH HOH . I 5 HOH A 11 411 17 HOH HOH . I 5 HOH A 12 412 18 HOH HOH . I 5 HOH A 13 413 19 HOH HOH . I 5 HOH A 14 414 21 HOH HOH . I 5 HOH A 15 415 23 HOH HOH . I 5 HOH A 16 416 24 HOH HOH . I 5 HOH A 17 417 26 HOH HOH . I 5 HOH A 18 418 27 HOH HOH . I 5 HOH A 19 419 30 HOH HOH . I 5 HOH A 20 420 32 HOH HOH . I 5 HOH A 21 421 33 HOH HOH . I 5 HOH A 22 422 34 HOH HOH . I 5 HOH A 23 423 36 HOH HOH . I 5 HOH A 24 424 38 HOH HOH . I 5 HOH A 25 425 42 HOH HOH . I 5 HOH A 26 426 43 HOH HOH . J 5 HOH B 1 401 1 HOH HOH . J 5 HOH B 2 402 5 HOH HOH . J 5 HOH B 3 403 8 HOH HOH . J 5 HOH B 4 404 9 HOH HOH . J 5 HOH B 5 405 13 HOH HOH . J 5 HOH B 6 406 15 HOH HOH . J 5 HOH B 7 407 20 HOH HOH . J 5 HOH B 8 408 22 HOH HOH . J 5 HOH B 9 409 25 HOH HOH . J 5 HOH B 10 410 28 HOH HOH . J 5 HOH B 11 411 29 HOH HOH . J 5 HOH B 12 412 31 HOH HOH . J 5 HOH B 13 413 35 HOH HOH . J 5 HOH B 14 414 37 HOH HOH . J 5 HOH B 15 415 39 HOH HOH . J 5 HOH B 16 416 40 HOH HOH . J 5 HOH B 17 417 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . E 3 -23.16 7.64 18.492 1 102.2 ? MG CLA 301 B 1 HETATM 2 C CHA CLA . . . E 3 -23.317 4.439 16.989 1 108.13 ? CHA CLA 301 B 1 HETATM 3 C CHB CLA . . . E 3 -19.691 7.161 18.344 1 100.13 ? CHB CLA 301 B 1 HETATM 4 C CHC CLA . . . E 3 -22.772 11.148 18.914 1 89.23 ? CHC CLA 301 B 1 HETATM 5 C CHD CLA . . . E 3 -26.69 8.184 17.832 1 83.44 ? CHD CLA 301 B 1 HETATM 6 N NA CLA . . . E 3 -21.679 6.024 17.778 1 111.3 ? NA CLA 301 B 1 HETATM 7 C C1A CLA . . . E 3 -21.939 4.945 17.158 1 110.88 ? C1A CLA 301 B 1 HETATM 8 C C2A CLA . . . E 3 -20.721 4.174 16.764 1 106.78 ? C2A CLA 301 B 1 HETATM 9 C C3A CLA . . . E 3 -19.799 4.683 17.842 1 104.27 ? C3A CLA 301 B 1 HETATM 10 C C4A CLA . . . E 3 -20.376 6.046 18.018 1 105.7 ? C4A CLA 301 B 1 HETATM 11 C CMA CLA . . . E 3 -20.1 3.902 19.108 1 93.13 ? CMA CLA 301 B 1 HETATM 12 C CAA CLA . . . E 3 -20.182 4.539 15.387 1 101.37 ? CAA CLA 301 B 1 HETATM 13 C CBA CLA . . . E 3 -21.252 4.992 14.398 1 106.67 ? CBA CLA 301 B 1 HETATM 14 C CGA CLA . . . E 3 -21.075 6.469 14.141 1 111.79 ? CGA CLA 301 B 1 HETATM 15 O O1A CLA . . . E 3 -19.993 7.001 14.327 1 111.74 ? O1A CLA 301 B 1 HETATM 16 O O2A CLA . . . E 3 -22.181 7.288 13.671 1 111.66 ? O2A CLA 301 B 1 HETATM 17 N NB CLA . . . E 3 -21.575 8.902 18.606 1 100.03 ? NB CLA 301 B 1 HETATM 18 C C1B CLA . . . E 3 -20.297 8.511 18.523 1 105.44 ? C1B CLA 301 B 1 HETATM 19 C C2B CLA . . . E 3 -19.407 9.697 18.651 1 102.97 ? C2B CLA 301 B 1 HETATM 20 C C3B CLA . . . E 3 -20.216 10.774 18.802 1 101.67 ? C3B CLA 301 B 1 HETATM 21 C C4B CLA . . . E 3 -21.605 10.236 18.779 1 95.43 ? C4B CLA 301 B 1 HETATM 22 C CMB CLA . . . E 3 -17.902 9.684 18.608 1 96.62 ? CMB CLA 301 B 1 HETATM 23 C CAB CLA . . . E 3 -19.571 12.104 18.954 1 97.87 ? CAB CLA 301 B 1 HETATM 24 C CBB CLA . . . E 3 -20.203 13.117 19.521 1 87.65 ? CBB CLA 301 B 1 HETATM 25 N NC CLA . . . E 3 -24.499 9.377 18.394 1 95.76 ? NC CLA 301 B 1 HETATM 26 C C1C CLA . . . E 3 -24.128 10.646 18.593 1 90.74 ? C1C CLA 301 B 1 HETATM 27 C C2C CLA . . . E 3 -25.298 11.56 18.447 1 86.11 ? C2C CLA 301 B 1 HETATM 28 C C3C CLA . . . E 3 -26.364 10.746 18.15 1 85.41 ? C3C CLA 301 B 1 HETATM 29 C C4C CLA . . . E 3 -25.818 9.355 18.127 1 91.42 ? C4C CLA 301 B 1 HETATM 30 C CMC CLA . . . E 3 -25.32 13.061 18.589 1 79.07 ? CMC CLA 301 B 1 HETATM 31 C CAC CLA . . . E 3 -27.789 11.187 17.908 1 78.99 ? CAC CLA 301 B 1 HETATM 32 C CBC CLA . . . E 3 -28.111 11.135 16.431 1 81.56 ? CBC CLA 301 B 1 HETATM 33 N ND CLA . . . E 3 -24.66 6.706 17.49 1 97.83 ? ND CLA 301 B 1 HETATM 34 C C1D CLA . . . E 3 -26.069 6.952 17.55 1 85.77 ? C1D CLA 301 B 1 HETATM 35 C C2D CLA . . . E 3 -26.738 5.678 17.219 1 81.94 ? C2D CLA 301 B 1 HETATM 36 C C3D CLA . . . E 3 -25.664 4.677 16.996 1 97.03 ? C3D CLA 301 B 1 HETATM 37 C C4D CLA . . . E 3 -24.46 5.346 17.197 1 102.66 ? C4D CLA 301 B 1 HETATM 38 C CMD CLA . . . E 3 -28.198 5.447 17.133 1 76.82 ? CMD CLA 301 B 1 HETATM 39 C CAD CLA . . . E 3 -25.368 3.251 16.664 1 106.56 ? CAD CLA 301 B 1 HETATM 40 O OBD CLA . . . E 3 -26.123 2.306 16.403 1 109.02 ? OBD CLA 301 B 1 HETATM 41 C CBD CLA . . . E 3 -23.892 3.125 16.616 1 106.43 ? CBD CLA 301 B 1 HETATM 42 C CGD CLA . . . E 3 -23.325 1.945 17.35 1 112.2 ? CGD CLA 301 B 1 HETATM 43 O O1D CLA . . . E 3 -23.776 1.573 18.421 1 109.55 ? O1D CLA 301 B 1 HETATM 44 O O2D CLA . . . E 3 -22.23 1.22 16.719 1 104.77 ? O2D CLA 301 B 1 HETATM 45 C CED CLA . . . E 3 -22.218 1.042 15.302 1 56.07 ? CED CLA 301 B 1 HETATM 46 C C1 CLA . . . E 3 -22.506 8.468 14.402 1 109.25 ? C1 CLA 301 B 1 HETATM 47 C C2 CLA . . . E 3 -23.251 9.462 13.541 1 108.32 ? C2 CLA 301 B 1 HETATM 48 C C3 CLA . . . E 3 -22.719 10.674 13.328 1 109.5 ? C3 CLA 301 B 1 HETATM 49 C C4 CLA . . . E 3 -21.403 11.016 13.966 1 105.27 ? C4 CLA 301 B 1 HETATM 50 C C5 CLA . . . E 3 -23.45 11.688 12.473 1 106 ? C5 CLA 301 B 1 HETATM 51 C C6 CLA . . . E 3 -22.551 12.228 11.362 1 112.29 ? C6 CLA 301 B 1 HETATM 52 C C7 CLA . . . E 3 -21.955 13.585 11.731 1 113.31 ? C7 CLA 301 B 1 HETATM 53 C C8 CLA . . . E 3 -21.953 14.606 10.597 1 105.34 ? C8 CLA 301 B 1 HETATM 54 C C9 CLA . . . E 3 -20.582 15.267 10.634 1 105.29 ? C9 CLA 301 B 1 HETATM 55 C C10 CLA . . . E 3 -22.927 15.726 10.946 1 112.87 ? C10 CLA 301 B 1 HETATM 56 C C11 CLA . . . E 3 -24.372 15.338 10.653 1 112.3 ? C11 CLA 301 B 1 HETATM 57 C C12 CLA . . . E 3 -25.34 16.245 11.403 1 109.04 ? C12 CLA 301 B 1 HETATM 58 C C13 CLA . . . E 3 -26.62 16.493 10.612 1 105.95 ? C13 CLA 301 B 1 HETATM 59 C C14 CLA . . . E 3 -27.114 15.218 9.936 1 103.06 ? C14 CLA 301 B 1 HETATM 60 C C15 CLA . . . E 3 -26.385 17.598 9.587 1 103.98 ? C15 CLA 301 B 1 HETATM 61 C C16 CLA . . . E 3 -27.635 18.455 9.422 1 102.2 ? C16 CLA 301 B 1 HETATM 62 C C17 CLA . . . E 3 -28.022 19.107 10.745 1 104.95 ? C17 CLA 301 B 1 HETATM 63 C C18 CLA . . . E 3 -29.53 19.068 10.962 1 104.89 ? C18 CLA 301 B 1 HETATM 64 C C19 CLA . . . E 3 -30.27 19.684 9.781 1 97.55 ? C19 CLA 301 B 1 HETATM 65 C C20 CLA . . . E 3 -30.012 17.648 11.231 1 98.46 ? C20 CLA 301 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 65 #