data_4RI3 # _model_server_result.job_id uVaiqWvdOiP0gL8sWMYKfw _model_server_result.datetime_utc '2025-02-17 18:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ri3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4RI3 # _exptl.entry_id 4RI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DICYCLOHEXYLUREA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RI3 _cell.length_a 71.704 _cell.length_b 77.697 _cell.length_c 93.159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD GLU 173 A GLU 173 1_555 C N1 DCW . A DCW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale2 B CD GLU 173 B GLU 173 1_555 I N1 DCW . B DCW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? metalc ? metalc1 A O ALA 6 A ALA 6 1_555 E HG HG . A HG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc2 A OH TYR 75 A TYR 75 1_555 F HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc3 A OH TYR 75 A TYR 75 1_555 H HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc4 A OE1 GLU 76 A GLU 76 1_555 H HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc5 A NH2 ARG 101 A ARG 101 1_555 O HG HG . B HG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 A O ILE 172 A ILE 172 1_555 M HG HG . B HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc7 A O THR 206 A THR 206 1_555 G HG HG . A HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc8 F HG HG . A HG 304 1_555 B O ILE 172 B ILE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc9 G HG HG . A HG 305 1_555 B NH2 ARG 101 B ARG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc10 B OH TYR 75 B TYR 75 1_555 N HG HG . B HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 B OE1 GLU 76 B GLU 76 1_555 N HG HG . B HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc12 B O THR 206 B THR 206 1_555 O HG HG . B HG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'C13 H24 N2 O' _chem_comp.formula_weight 224.342 _chem_comp.id DCW _chem_comp.mon_nstd_flag . _chem_comp.name DICYCLOHEXYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DCW sing 121 n n N1 C2 DCW sing 122 n n O1 C1 DCW doub 123 n n C1 N2 DCW sing 124 n n C2 C3 DCW sing 125 n n C2 C7 DCW sing 126 n n N2 C8 DCW sing 127 n n C3 C4 DCW sing 128 n n C7 C6 DCW sing 129 n n C4 C5 DCW sing 130 n n C5 C6 DCW sing 131 n n C8 C9 DCW sing 132 n n C8 C13 DCW sing 133 n n C9 C10 DCW sing 134 n n C13 C12 DCW sing 135 n n C10 C11 DCW sing 136 n n C11 C12 DCW sing 137 n n N1 H1 DCW sing 138 n n C2 H2 DCW sing 139 n n N2 HA DCW sing 140 n n C3 H31C DCW sing 141 n n C3 H32C DCW sing 142 n n C7 H71C DCW sing 143 n n C7 H72C DCW sing 144 n n C8 H8 DCW sing 145 n n C4 H41C DCW sing 146 n n C4 H42C DCW sing 147 n n C6 H61C DCW sing 148 n n C6 H62C DCW sing 149 n n C5 H51C DCW sing 150 n n C5 H52C DCW sing 151 n n C9 H91C DCW sing 152 n n C9 H92C DCW sing 153 n n C13 H131 DCW sing 154 n n C13 H132 DCW sing 155 n n C10 H101 DCW sing 156 n n C10 H102 DCW sing 157 n n C12 H121 DCW sing 158 n n C12 H122 DCW sing 159 n n C11 H111 DCW sing 160 n n C11 H112 DCW sing 161 n n # _atom_sites.entry_id 4RI3 _atom_sites.fract_transf_matrix[1][1] 0.013946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DCW A 1 301 1 DCW DCW . D 3 BNG A 1 302 2 BNG BNG . E 4 HG A 1 303 1 HG HG . F 4 HG A 1 304 2 HG HG . G 4 HG A 1 305 4 HG HG . H 4 HG A 1 306 5 HG HG . I 2 DCW B 1 301 2 DCW DCW . J 3 BNG B 1 302 1 BNG BNG . K 3 BNG B 1 303 3 BNG BNG . L 3 BNG B 1 304 4 BNG BNG . M 4 HG B 1 305 3 HG HG . N 4 HG B 1 306 6 HG HG . O 4 HG B 1 307 7 HG HG . P 5 HOH A 1 401 1 HOH HOH . P 5 HOH A 2 402 2 HOH HOH . Q 5 HOH B 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCW . . . C 2 98.684 79.55 19.041 0.69 47.95 ? N1 DCW 301 A 1 HETATM 2 O O1 DCW . . . C 2 99.76 79.335 21.041 0.69 56.02 ? O1 DCW 301 A 1 HETATM 3 C C1 DCW . . . C 2 99.18 80.074 20.271 0.69 49.9 ? C1 DCW 301 A 1 HETATM 4 C C2 DCW . . . C 2 97.975 80.294 18.044 0.69 44.78 ? C2 DCW 301 A 1 HETATM 5 N N2 DCW . . . C 2 99.025 81.431 20.65 0.69 50.43 ? N2 DCW 301 A 1 HETATM 6 C C3 DCW . . . C 2 96.628 80.776 18.539 0.69 45.44 ? C3 DCW 301 A 1 HETATM 7 C C7 DCW . . . C 2 98.757 81.483 17.529 0.69 44.74 ? C7 DCW 301 A 1 HETATM 8 C C4 DCW . . . C 2 95.866 81.346 17.358 0.69 40.94 ? C4 DCW 301 A 1 HETATM 9 C C5 DCW . . . C 2 96.634 82.5 16.744 0.69 36.98 ? C5 DCW 301 A 1 HETATM 10 C C6 DCW . . . C 2 98.027 82.061 16.336 0.69 42.44 ? C6 DCW 301 A 1 HETATM 11 C C8 DCW . . . C 2 99.569 81.851 21.893 0.69 49.91 ? C8 DCW 301 A 1 HETATM 12 C C9 DCW . . . C 2 98.71 82.957 22.475 0.69 48.04 ? C9 DCW 301 A 1 HETATM 13 C C13 DCW . . . C 2 101 82.299 21.65 0.69 45.07 ? C13 DCW 301 A 1 HETATM 14 C C10 DCW . . . C 2 99.417 83.714 23.581 0.69 44.12 ? C10 DCW 301 A 1 HETATM 15 C C11 DCW . . . C 2 100.674 82.993 24.017 0.69 50.21 ? C11 DCW 301 A 1 HETATM 16 C C12 DCW . . . C 2 101.626 82.987 22.846 0.69 44.35 ? C12 DCW 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #