data_4RI3 # _model_server_result.job_id 8fcQwGSbAHL8wQcXOdl8nw _model_server_result.datetime_utc '2024-11-24 11:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ri3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 4RI3 # _exptl.entry_id 4RI3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DICYCLOHEXYLUREA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RI3 _cell.length_a 71.704 _cell.length_b 77.697 _cell.length_c 93.159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CD GLU 173 A GLU 173 1_555 C N1 DCW . A DCW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale2 B CD GLU 173 B GLU 173 1_555 I N1 DCW . B DCW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? metalc ? metalc1 A O ALA 6 A ALA 6 1_555 E HG HG . A HG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc2 A OH TYR 75 A TYR 75 1_555 F HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc3 A OH TYR 75 A TYR 75 1_555 H HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc4 A OE1 GLU 76 A GLU 76 1_555 H HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc5 A NH2 ARG 101 A ARG 101 1_555 O HG HG . B HG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 A O ILE 172 A ILE 172 1_555 M HG HG . B HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc7 A O THR 206 A THR 206 1_555 G HG HG . A HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? metalc ? metalc8 F HG HG . A HG 304 1_555 B O ILE 172 B ILE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc9 G HG HG . A HG 305 1_555 B NH2 ARG 101 B ARG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc10 B OH TYR 75 B TYR 75 1_555 N HG HG . B HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 B OE1 GLU 76 B GLU 76 1_555 N HG HG . B HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc12 B O THR 206 B THR 206 1_555 O HG HG . B HG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'C13 H24 N2 O' _chem_comp.formula_weight 224.342 _chem_comp.id DCW _chem_comp.mon_nstd_flag . _chem_comp.name DICYCLOHEXYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RI3 _atom_sites.fract_transf_matrix[1][1] 0.013946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DCW A 1 301 1 DCW DCW . D 3 BNG A 1 302 2 BNG BNG . E 4 HG A 1 303 1 HG HG . F 4 HG A 1 304 2 HG HG . G 4 HG A 1 305 4 HG HG . H 4 HG A 1 306 5 HG HG . I 2 DCW B 1 301 2 DCW DCW . J 3 BNG B 1 302 1 BNG BNG . K 3 BNG B 1 303 3 BNG BNG . L 3 BNG B 1 304 4 BNG BNG . M 4 HG B 1 305 3 HG HG . N 4 HG B 1 306 6 HG HG . O 4 HG B 1 307 7 HG HG . P 5 HOH A 1 401 1 HOH HOH . P 5 HOH A 2 402 2 HOH HOH . Q 5 HOH B 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCW . . . I 2 96.956 86.562 31.639 0.87 57.36 ? N1 DCW 301 B 1 HETATM 2 O O1 DCW . . . I 2 97.432 84.493 30.755 0.87 66.84 ? O1 DCW 301 B 1 HETATM 3 C C1 DCW . . . I 2 97.628 85.695 30.728 0.87 61.61 ? C1 DCW 301 B 1 HETATM 4 C C2 DCW . . . I 2 96.009 86.092 32.604 0.87 52.35 ? C2 DCW 301 B 1 HETATM 5 N N2 DCW . . . I 2 98.537 86.266 29.79 0.87 51.16 ? N2 DCW 301 B 1 HETATM 6 C C3 DCW . . . I 2 96.643 85.09 33.557 0.87 50.58 ? C3 DCW 301 B 1 HETATM 7 C C7 DCW . . . I 2 94.786 85.559 31.867 0.87 60.26 ? C7 DCW 301 B 1 HETATM 8 C C4 DCW . . . I 2 95.766 83.873 33.748 0.87 49.87 ? C4 DCW 301 B 1 HETATM 9 C C5 DCW . . . I 2 94.364 84.355 34.036 0.87 48.4 ? C5 DCW 301 B 1 HETATM 10 C C6 DCW . . . I 2 93.758 84.877 32.752 0.87 48.79 ? C6 DCW 301 B 1 HETATM 11 C C8 DCW . . . I 2 99.283 85.512 28.838 0.87 53.98 ? C8 DCW 301 B 1 HETATM 12 C C9 DCW . . . I 2 100.31 84.669 29.569 0.87 54.08 ? C9 DCW 301 B 1 HETATM 13 C C13 DCW . . . I 2 98.368 84.661 27.976 0.87 59.05 ? C13 DCW 301 B 1 HETATM 14 C C10 DCW . . . I 2 101.101 83.836 28.587 0.87 55.21 ? C10 DCW 301 B 1 HETATM 15 C C11 DCW . . . I 2 100.146 82.92 27.859 0.87 54.32 ? C11 DCW 301 B 1 HETATM 16 C C12 DCW . . . I 2 99.163 83.754 27.068 0.87 59.2 ? C12 DCW 301 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #