data_4RI3
#
_model_server_result.job_id            VZH4RDuI1eNiBwY7GVlAMA 
_model_server_result.datetime_utc      '2024-11-08 15:48:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ri3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4RI3 
#
_exptl.entry_id    4RI3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RI3 
_cell.length_a            71.704 
_cell.length_b            77.697 
_cell.length_c            93.159 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RI3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CD GLU 173 A GLU 173 1_555 C N1 DCW . A DCW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale2 B CD GLU 173 B GLU 173 1_555 I N1 DCW . B DCW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.561 ? 
metalc ? metalc1 A O ALA 6 A ALA 6 1_555 E HG HG . A HG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc2 A OH TYR 75 A TYR 75 1_555 F HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? 
metalc ? metalc3 A OH TYR 75 A TYR 75 1_555 H HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? 
metalc ? metalc4 A OE1 GLU 76 A GLU 76 1_555 H HG HG . A HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc5 A NH2 ARG 101 A ARG 101 1_555 O HG HG . B HG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc6 A O ILE 172 A ILE 172 1_555 M HG HG . B HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc7 A O THR 206 A THR 206 1_555 G HG HG . A HG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? 
metalc ? metalc8 F HG HG . A HG 304 1_555 B O ILE 172 B ILE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc9 G HG HG . A HG 305 1_555 B NH2 ARG 101 B ARG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc10 B OH TYR 75 B TYR 75 1_555 N HG HG . B HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc11 B OE1 GLU 76 B GLU 76 1_555 N HG HG . B HG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc12 B O THR 206 B THR 206 1_555 O HG HG . B HG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4RI3 
_atom_sites.fract_transf_matrix[1][1]    0.013946 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012871 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010734 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DCW A 1 301 1 DCW DCW . 
D 3 BNG A 1 302 2 BNG BNG . 
E 4 HG A 1 303 1 HG HG . 
F 4 HG A 1 304 2 HG HG . 
G 4 HG A 1 305 4 HG HG . 
H 4 HG A 1 306 5 HG HG . 
I 2 DCW B 1 301 2 DCW DCW . 
J 3 BNG B 1 302 1 BNG BNG . 
K 3 BNG B 1 303 3 BNG BNG . 
L 3 BNG B 1 304 4 BNG BNG . 
M 4 HG B 1 305 3 HG HG . 
N 4 HG B 1 306 6 HG HG . 
O 4 HG B 1 307 7 HG HG . 
P 5 HOH A 1 401 1 HOH HOH . 
P 5 HOH A 2 402 2 HOH HOH . 
Q 5 HOH B 1 401 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . D 3 77.037 97.952 12.902 1 62.73 ? C1 BNG 302 A 1 
HETATM 2 C C2 BNG . . . D 3 75.629 97.636 12.39 1 52.95 ? C2 BNG 302 A 1 
HETATM 3 C C3 BNG . . . D 3 75.575 97.612 10.913 1 62.07 ? C3 BNG 302 A 1 
HETATM 4 C C4 BNG . . . D 3 76.093 98.789 10.304 1 65.14 ? C4 BNG 302 A 1 
HETATM 5 C C5 BNG . . . D 3 77.477 99.139 10.83 1 65.92 ? C5 BNG 302 A 1 
HETATM 6 C C6 BNG . . . D 3 77.888 100.464 10.327 1 67.15 ? C6 BNG 302 A 1 
HETATM 7 C C1' BNG . . . D 3 78.07 98.739 14.905 1 62.26 ? C1' BNG 302 A 1 
HETATM 8 C C2' BNG . . . D 3 78.732 98.041 16.106 1 56.92 ? C2' BNG 302 A 1 
HETATM 9 C C3' BNG . . . D 3 79.927 98.743 16.787 1 61.64 ? C3' BNG 302 A 1 
HETATM 10 C C4' BNG . . . D 3 81.358 98.353 16.349 1 60.85 ? C4' BNG 302 A 1 
HETATM 11 C C5' BNG . . . D 3 81.81 98.744 14.941 1 71.98 ? C5' BNG 302 A 1 
HETATM 12 C C6' BNG . . . D 3 83.303 98.854 14.674 1 66.75 ? C6' BNG 302 A 1 
HETATM 13 C C7' BNG . . . D 3 84.136 97.573 14.689 1 55.33 ? C7' BNG 302 A 1 
HETATM 14 C C8' BNG . . . D 3 85.508 97.615 15.387 1 59.84 ? C8' BNG 302 A 1 
HETATM 15 C C9' BNG . . . D 3 85.529 97.859 16.882 1 58.72 ? C9' BNG 302 A 1 
HETATM 16 O O1 BNG . . . D 3 77.029 98.085 14.274 1 64.99 ? O1 BNG 302 A 1 
HETATM 17 O O2 BNG . . . D 3 75.195 96.413 12.922 1 52.72 ? O2 BNG 302 A 1 
HETATM 18 O O3 BNG . . . D 3 74.21 97.369 10.465 1 72.45 ? O3 BNG 302 A 1 
HETATM 19 O O4 BNG . . . D 3 76.165 98.59 8.893 1 59.04 ? O4 BNG 302 A 1 
HETATM 20 O O5 BNG . . . D 3 77.561 99.114 12.314 1 71.25 ? O5 BNG 302 A 1 
HETATM 21 O O6 BNG . . . D 3 77.715 100.72 8.966 1 63.84 ? O6 BNG 302 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           211 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#