data_4RIU
#
_model_server_result.job_id            CHLAqHyE-hxOz2qg5VlQuA 
_model_server_result.datetime_utc      '2024-11-16 09:35:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4riu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4RIU 
#
_exptl.entry_id    4RIU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.83 
_cell.angle_gamma         90 
_cell.entry_id            4RIU 
_cell.length_a            41.996 
_cell.length_b            41.215 
_cell.length_c            71.834 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 F NAZ 3QR . A 3QR 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
metalc ? metalc5 B ZN ZN . A ZN 301 1_555 F OBD 3QR . A 3QR 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     4RIU 
_atom_sites.fract_transf_matrix[1][1]    0.023812 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005862 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014337 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 GOL A 1 302 400 GOL GOL . 
D 3 GOL A 1 303 401 GOL GOL . 
E 3 GOL A 1 304 402 GOL GOL . 
F 4 3QR A 1 305 1 3QR 3QR . 
G 5 HOH A 1 401 1 HOH HOH . 
G 5 HOH A 2 402 2 HOH HOH . 
G 5 HOH A 3 403 3 HOH HOH . 
G 5 HOH A 4 404 4 HOH HOH . 
G 5 HOH A 5 405 5 HOH HOH . 
G 5 HOH A 6 406 6 HOH HOH . 
G 5 HOH A 7 407 7 HOH HOH . 
G 5 HOH A 8 408 8 HOH HOH . 
G 5 HOH A 9 409 9 HOH HOH . 
G 5 HOH A 10 410 10 HOH HOH . 
G 5 HOH A 11 411 12 HOH HOH . 
G 5 HOH A 12 412 14 HOH HOH . 
G 5 HOH A 13 413 15 HOH HOH . 
G 5 HOH A 14 414 16 HOH HOH . 
G 5 HOH A 15 415 17 HOH HOH . 
G 5 HOH A 16 416 18 HOH HOH . 
G 5 HOH A 17 417 21 HOH HOH . 
G 5 HOH A 18 418 23 HOH HOH . 
G 5 HOH A 19 419 24 HOH HOH . 
G 5 HOH A 20 420 25 HOH HOH . 
G 5 HOH A 21 421 26 HOH HOH . 
G 5 HOH A 22 422 27 HOH HOH . 
G 5 HOH A 23 423 28 HOH HOH . 
G 5 HOH A 24 424 31 HOH HOH . 
G 5 HOH A 25 425 32 HOH HOH . 
G 5 HOH A 26 426 33 HOH HOH . 
G 5 HOH A 27 427 34 HOH HOH . 
G 5 HOH A 28 428 35 HOH HOH . 
G 5 HOH A 29 429 36 HOH HOH . 
G 5 HOH A 30 430 37 HOH HOH . 
G 5 HOH A 31 431 38 HOH HOH . 
G 5 HOH A 32 432 39 HOH HOH . 
G 5 HOH A 33 433 40 HOH HOH . 
G 5 HOH A 34 434 41 HOH HOH . 
G 5 HOH A 35 435 42 HOH HOH . 
G 5 HOH A 36 436 43 HOH HOH . 
G 5 HOH A 37 437 44 HOH HOH . 
G 5 HOH A 38 438 45 HOH HOH . 
G 5 HOH A 39 439 46 HOH HOH . 
G 5 HOH A 40 440 47 HOH HOH . 
G 5 HOH A 41 441 48 HOH HOH . 
G 5 HOH A 42 442 49 HOH HOH . 
G 5 HOH A 43 443 50 HOH HOH . 
G 5 HOH A 44 444 51 HOH HOH . 
G 5 HOH A 45 445 52 HOH HOH . 
G 5 HOH A 46 446 53 HOH HOH . 
G 5 HOH A 47 447 54 HOH HOH . 
G 5 HOH A 48 448 55 HOH HOH . 
G 5 HOH A 49 449 56 HOH HOH . 
G 5 HOH A 50 450 57 HOH HOH . 
G 5 HOH A 51 451 58 HOH HOH . 
G 5 HOH A 52 452 59 HOH HOH . 
G 5 HOH A 53 453 60 HOH HOH . 
G 5 HOH A 54 454 61 HOH HOH . 
G 5 HOH A 55 455 62 HOH HOH . 
G 5 HOH A 56 456 63 HOH HOH . 
G 5 HOH A 57 457 64 HOH HOH . 
G 5 HOH A 58 458 65 HOH HOH . 
G 5 HOH A 59 459 66 HOH HOH . 
G 5 HOH A 60 460 67 HOH HOH . 
G 5 HOH A 61 461 68 HOH HOH . 
G 5 HOH A 62 462 69 HOH HOH . 
G 5 HOH A 63 463 70 HOH HOH . 
G 5 HOH A 64 464 71 HOH HOH . 
G 5 HOH A 65 465 72 HOH HOH . 
G 5 HOH A 66 466 73 HOH HOH . 
G 5 HOH A 67 467 74 HOH HOH . 
G 5 HOH A 68 468 75 HOH HOH . 
G 5 HOH A 69 469 76 HOH HOH . 
G 5 HOH A 70 470 77 HOH HOH . 
G 5 HOH A 71 471 78 HOH HOH . 
G 5 HOH A 72 472 79 HOH HOH . 
G 5 HOH A 73 473 81 HOH HOH . 
G 5 HOH A 74 474 82 HOH HOH . 
G 5 HOH A 75 475 83 HOH HOH . 
G 5 HOH A 76 476 84 HOH HOH . 
G 5 HOH A 77 477 85 HOH HOH . 
G 5 HOH A 78 478 86 HOH HOH . 
G 5 HOH A 79 479 87 HOH HOH . 
G 5 HOH A 80 480 88 HOH HOH . 
G 5 HOH A 81 481 89 HOH HOH . 
G 5 HOH A 82 482 90 HOH HOH . 
G 5 HOH A 83 483 91 HOH HOH . 
G 5 HOH A 84 484 92 HOH HOH . 
G 5 HOH A 85 485 93 HOH HOH . 
G 5 HOH A 86 486 94 HOH HOH . 
G 5 HOH A 87 487 95 HOH HOH . 
G 5 HOH A 88 488 96 HOH HOH . 
G 5 HOH A 89 489 97 HOH HOH . 
G 5 HOH A 90 490 98 HOH HOH . 
G 5 HOH A 91 491 99 HOH HOH . 
G 5 HOH A 92 492 100 HOH HOH . 
G 5 HOH A 93 493 101 HOH HOH . 
G 5 HOH A 94 494 102 HOH HOH . 
G 5 HOH A 95 495 103 HOH HOH . 
G 5 HOH A 96 496 106 HOH HOH . 
G 5 HOH A 97 497 107 HOH HOH . 
G 5 HOH A 98 498 108 HOH HOH . 
G 5 HOH A 99 499 110 HOH HOH . 
G 5 HOH A 100 500 111 HOH HOH . 
G 5 HOH A 101 501 112 HOH HOH . 
G 5 HOH A 102 502 113 HOH HOH . 
G 5 HOH A 103 503 114 HOH HOH . 
G 5 HOH A 104 504 115 HOH HOH . 
G 5 HOH A 105 505 116 HOH HOH . 
G 5 HOH A 106 506 117 HOH HOH . 
G 5 HOH A 107 507 119 HOH HOH . 
G 5 HOH A 108 508 120 HOH HOH . 
G 5 HOH A 109 509 122 HOH HOH . 
G 5 HOH A 110 510 123 HOH HOH . 
G 5 HOH A 111 511 124 HOH HOH . 
G 5 HOH A 112 512 125 HOH HOH . 
G 5 HOH A 113 513 126 HOH HOH . 
G 5 HOH A 114 514 127 HOH HOH . 
G 5 HOH A 115 515 128 HOH HOH . 
G 5 HOH A 116 516 129 HOH HOH . 
G 5 HOH A 117 517 130 HOH HOH . 
G 5 HOH A 118 518 131 HOH HOH . 
G 5 HOH A 119 519 132 HOH HOH . 
G 5 HOH A 120 520 133 HOH HOH . 
G 5 HOH A 121 521 134 HOH HOH . 
G 5 HOH A 122 522 135 HOH HOH . 
G 5 HOH A 123 523 136 HOH HOH . 
G 5 HOH A 124 524 137 HOH HOH . 
G 5 HOH A 125 525 138 HOH HOH . 
G 5 HOH A 126 526 139 HOH HOH . 
G 5 HOH A 127 527 140 HOH HOH . 
G 5 HOH A 128 528 141 HOH HOH . 
G 5 HOH A 129 529 142 HOH HOH . 
G 5 HOH A 130 530 143 HOH HOH . 
G 5 HOH A 131 531 144 HOH HOH . 
G 5 HOH A 132 532 145 HOH HOH . 
G 5 HOH A 133 533 146 HOH HOH . 
G 5 HOH A 134 534 147 HOH HOH . 
G 5 HOH A 135 535 148 HOH HOH . 
G 5 HOH A 136 536 149 HOH HOH . 
G 5 HOH A 137 537 150 HOH HOH . 
G 5 HOH A 138 538 151 HOH HOH . 
G 5 HOH A 139 539 152 HOH HOH . 
G 5 HOH A 140 540 153 HOH HOH . 
G 5 HOH A 141 541 154 HOH HOH . 
G 5 HOH A 142 542 156 HOH HOH . 
G 5 HOH A 143 543 157 HOH HOH . 
G 5 HOH A 144 544 158 HOH HOH . 
G 5 HOH A 145 545 159 HOH HOH . 
G 5 HOH A 146 546 160 HOH HOH . 
G 5 HOH A 147 547 161 HOH HOH . 
G 5 HOH A 148 548 162 HOH HOH . 
G 5 HOH A 149 549 164 HOH HOH . 
G 5 HOH A 150 550 165 HOH HOH . 
G 5 HOH A 151 551 166 HOH HOH . 
G 5 HOH A 152 552 167 HOH HOH . 
G 5 HOH A 153 553 168 HOH HOH . 
G 5 HOH A 154 554 169 HOH HOH . 
G 5 HOH A 155 555 170 HOH HOH . 
G 5 HOH A 156 556 171 HOH HOH . 
G 5 HOH A 157 557 172 HOH HOH . 
G 5 HOH A 158 558 173 HOH HOH . 
G 5 HOH A 159 559 175 HOH HOH . 
G 5 HOH A 160 560 176 HOH HOH . 
G 5 HOH A 161 561 177 HOH HOH . 
G 5 HOH A 162 562 178 HOH HOH . 
G 5 HOH A 163 563 179 HOH HOH . 
G 5 HOH A 164 564 180 HOH HOH . 
G 5 HOH A 165 565 181 HOH HOH . 
G 5 HOH A 166 566 182 HOH HOH . 
G 5 HOH A 167 567 183 HOH HOH . 
G 5 HOH A 168 568 184 HOH HOH . 
G 5 HOH A 169 569 185 HOH HOH . 
G 5 HOH A 170 570 186 HOH HOH . 
G 5 HOH A 171 571 187 HOH HOH . 
G 5 HOH A 172 572 188 HOH HOH . 
G 5 HOH A 173 573 189 HOH HOH . 
G 5 HOH A 174 574 193 HOH HOH . 
G 5 HOH A 175 575 194 HOH HOH . 
G 5 HOH A 176 576 195 HOH HOH . 
G 5 HOH A 177 577 197 HOH HOH . 
G 5 HOH A 178 578 198 HOH HOH . 
G 5 HOH A 179 579 199 HOH HOH . 
G 5 HOH A 180 580 202 HOH HOH . 
G 5 HOH A 181 581 203 HOH HOH . 
G 5 HOH A 182 582 205 HOH HOH . 
G 5 HOH A 183 583 206 HOH HOH . 
G 5 HOH A 184 584 207 HOH HOH . 
G 5 HOH A 185 585 208 HOH HOH . 
G 5 HOH A 186 586 209 HOH HOH . 
G 5 HOH A 187 587 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 6.391 -11.996 83.484 0.69 39.22 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . C 3 6.662 -10.757 82.881 0.69 24.44 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . C 3 5.916 -11.763 84.901 0.69 37.43 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . C 3 6.548 -12.698 85.744 0.69 43.94 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . C 3 6.326 -10.362 85.321 0.69 28.21 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . C 3 5.946 -10.228 86.664 0.69 18.61 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#