data_4RIW
#
_model_server_result.job_id            ozPVKdjVLLJAExRpWbG0OQ 
_model_server_result.datetime_utc      '2024-11-21 17:23:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4riw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1101}' 
#
_entry.id    4RIW 
#
_exptl.entry_id    4RIW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.89 
_cell.angle_gamma         90 
_cell.entry_id            4RIW 
_cell.length_a            65.78 
_cell.length_b            154.64 
_cell.length_c            86.97 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RIW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 145 A ASN 820 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc2 A OD2 ASP 158 A ASP 833 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc3 E O3A ANP . A ANP 1101 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc4 B OD1 ASN 165 B ASN 818 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 B OD2 ASP 178 B ASP 831 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc6 G O1B ADP . B ADP 1001 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc7 G O2A ADP . B ADP 1001 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc8 C OD1 ASN 145 C ASN 820 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc9 C OD2 ASP 158 C ASP 833 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc10 I O3A ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc11 I O2A ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc12 D OD1 ASN 165 D ASN 818 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc13 D OD2 ASP 178 D ASP 831 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc14 K O2B ADP . D ADP 1001 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc15 K O2A ADP . D ADP 1001 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 57 n n 
PG O2G ANP sing 58 n n 
PG O3G ANP sing 59 n n 
PG N3B ANP sing 60 n n 
O2G HOG2 ANP sing 61 n n 
O3G HOG3 ANP sing 62 n n 
PB O1B ANP doub 63 n n 
PB O2B ANP sing 64 n n 
PB N3B ANP sing 65 n n 
PB O3A ANP sing 66 n n 
O2B HOB2 ANP sing 67 n n 
N3B HNB1 ANP sing 68 n n 
PA O1A ANP doub 69 n n 
PA O2A ANP sing 70 n n 
PA O3A ANP sing 71 n n 
PA O5' ANP sing 72 n n 
O2A HOA2 ANP sing 73 n n 
O5' C5' ANP sing 74 n n 
C5' C4' ANP sing 75 n n 
C5' "H5'1" ANP sing 76 n n 
C5' "H5'2" ANP sing 77 n n 
C4' O4' ANP sing 78 n n 
C4' C3' ANP sing 79 n n 
C4' H4' ANP sing 80 n n 
O4' C1' ANP sing 81 n n 
C3' O3' ANP sing 82 n n 
C3' C2' ANP sing 83 n n 
C3' H3' ANP sing 84 n n 
O3' HO3' ANP sing 85 n n 
C2' O2' ANP sing 86 n n 
C2' C1' ANP sing 87 n n 
C2' H2' ANP sing 88 n n 
O2' HO2' ANP sing 89 n n 
C1' N9 ANP sing 90 n n 
C1' H1' ANP sing 91 n n 
N9 C8 ANP sing 92 n y 
N9 C4 ANP sing 93 n y 
C8 N7 ANP doub 94 n y 
C8 H8 ANP sing 95 n n 
N7 C5 ANP sing 96 n y 
C5 C6 ANP sing 97 n y 
C5 C4 ANP doub 98 n y 
C6 N6 ANP sing 99 n n 
C6 N1 ANP doub 100 n y 
N6 HN61 ANP sing 101 n n 
N6 HN62 ANP sing 102 n n 
N1 C2 ANP sing 103 n y 
C2 N3 ANP doub 104 n y 
C2 H2 ANP sing 105 n n 
N3 C4 ANP sing 106 n y 
#
_atom_sites.entry_id                     4RIW 
_atom_sites.fract_transf_matrix[1][1]    0.015202 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005802 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 1101 1 ANP ANP . 
F 4 MG A 1 1102 2 MG MG . 
G 5 ADP B 1 1001 1 ADP ADP . 
H 4 MG B 1 1002 2 MG MG . 
I 3 ANP C 1 1101 1 ANP ANP . 
J 4 MG C 1 1102 2 MG MG . 
K 5 ADP D 1 1001 1 ADP ADP . 
L 4 MG D 1 1002 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 3 44.489 20.487 -48.008 1 22.03 ? PG ANP 1101 C 1 
HETATM 2 O O1G ANP . . . I 3 45.954 20.632 -47.747 1 27.67 ? O1G ANP 1101 C 1 
HETATM 3 O O2G ANP . . . I 3 44.133 18.951 -48.07 1 11.96 ? O2G ANP 1101 C 1 
HETATM 4 O O3G ANP . . . I 3 44.127 21.165 -49.392 1 8.65 ? O3G ANP 1101 C 1 
HETATM 5 P PB ANP . . . I 3 44.435 22.394 -45.93 1 13 ? PB ANP 1101 C 1 
HETATM 6 O O1B ANP . . . I 3 44.178 22.232 -44.468 1 23.1 ? O1B ANP 1101 C 1 
HETATM 7 O O2B ANP . . . I 3 45.963 22.257 -46.181 1 46.04 ? O2B ANP 1101 C 1 
HETATM 8 N N3B ANP . . . I 3 43.583 21.214 -46.773 1 34.35 ? N3B ANP 1101 C 1 
HETATM 9 P PA ANP . . . I 3 44.74 24.729 -47.386 1 20.03 ? PA ANP 1101 C 1 
HETATM 10 O O1A ANP . . . I 3 46.067 24.174 -47.73 1 21.99 ? O1A ANP 1101 C 1 
HETATM 11 O O2A ANP . . . I 3 43.825 24.967 -48.59 1 25.77 ? O2A ANP 1101 C 1 
HETATM 12 O O3A ANP . . . I 3 43.936 23.808 -46.368 1 75.3 ? O3A ANP 1101 C 1 
HETATM 13 O O5' ANP . . . I 3 44.985 26.058 -46.564 1 38.76 ? O5' ANP 1101 C 1 
HETATM 14 C C5' ANP . . . I 3 45.549 26.01 -45.24 1 34.28 ? C5' ANP 1101 C 1 
HETATM 15 C C4' ANP . . . I 3 44.723 26.86 -44.305 1 26.73 ? C4' ANP 1101 C 1 
HETATM 16 O O4' ANP . . . I 3 43.82 27.695 -45.061 1 25.8 ? O4' ANP 1101 C 1 
HETATM 17 C C3' ANP . . . I 3 43.871 26.08 -43.297 1 26.84 ? C3' ANP 1101 C 1 
HETATM 18 O O3' ANP . . . I 3 44.177 26.477 -41.965 1 29.63 ? O3' ANP 1101 C 1 
HETATM 19 C C2' ANP . . . I 3 42.427 26.426 -43.689 1 28.43 ? C2' ANP 1101 C 1 
HETATM 20 O O2' ANP . . . I 3 41.574 26.533 -42.554 1 28.59 ? O2' ANP 1101 C 1 
HETATM 21 C C1' ANP . . . I 3 42.601 27.784 -44.359 1 29.72 ? C1' ANP 1101 C 1 
HETATM 22 N N9 ANP . . . I 3 41.539 28.126 -45.301 1 29.18 ? N9 ANP 1101 C 1 
HETATM 23 C C8 ANP . . . I 3 41.328 27.585 -46.541 1 34.31 ? C8 ANP 1101 C 1 
HETATM 24 N N7 ANP . . . I 3 40.291 28.08 -47.173 1 33.61 ? N7 ANP 1101 C 1 
HETATM 25 C C5 ANP . . . I 3 39.782 29.012 -46.279 1 27.28 ? C5 ANP 1101 C 1 
HETATM 26 C C6 ANP . . . I 3 38.676 29.885 -46.348 1 29.12 ? C6 ANP 1101 C 1 
HETATM 27 N N6 ANP . . . I 3 37.854 29.961 -47.396 1 31.58 ? N6 ANP 1101 C 1 
HETATM 28 N N1 ANP . . . I 3 38.444 30.687 -45.283 1 28.57 ? N1 ANP 1101 C 1 
HETATM 29 C C2 ANP . . . I 3 39.265 30.613 -44.232 1 25.25 ? C2 ANP 1101 C 1 
HETATM 30 N N3 ANP . . . I 3 40.333 29.831 -44.055 1 24.38 ? N3 ANP 1101 C 1 
HETATM 31 C C4 ANP . . . I 3 40.538 29.051 -45.123 1 24.11 ? C4 ANP 1101 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           786 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#