data_4RIX # _model_server_result.job_id 3RBvS04hl6eh3KVVpeVm1g _model_server_result.datetime_utc '2025-07-05 15:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 4RIX # _exptl.entry_id 4RIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.09 _cell.angle_gamma 90 _cell.entry_id 4RIX _cell.length_a 64.649 _cell.length_b 155.053 _cell.length_c 86.857 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 145 A ASN 820 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OD2 ASP 158 A ASP 833 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 E O3A ANP . A ANP 1101 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 G O1B ADP . B ADP 1001 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 C OD1 ASN 145 C ASN 820 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 C OD2 ASP 158 C ASP 833 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc7 I O3A ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 I O2A ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc9 I O3G ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc10 D OD1 ASN 165 D ASN 818 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc11 K O2A ADP . D ADP 1001 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc12 K O2B ADP . D ADP 1001 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 4RIX _atom_sites.fract_transf_matrix[1][1] 0.015468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005966 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 1101 1 ANP ANP . F 4 MG A 1 1102 2 MG MG . G 5 ADP B 1 1001 1 ADP ADP . H 4 MG B 1 1002 2 MG MG . I 3 ANP C 1 1101 1 ANP ANP . J 4 MG C 1 1102 2 MG MG . K 5 ADP D 1 1001 1 ADP ADP . L 4 MG D 1 1002 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 16.135 -45.119 24.998 1 63.41 ? PG ANP 1101 A 1 HETATM 2 O O1G ANP . . . E 3 16.612 -46.072 26.049 1 71.8 ? O1G ANP 1101 A 1 HETATM 3 O O2G ANP . . . E 3 16.71 -43.683 25.3 1 68.68 ? O2G ANP 1101 A 1 HETATM 4 O O3G ANP . . . E 3 14.556 -45.036 25.044 1 82.1 ? O3G ANP 1101 A 1 HETATM 5 P PB ANP . . . E 3 17.63 -46.932 23.34 1 66.48 ? PB ANP 1101 A 1 HETATM 6 O O1B ANP . . . E 3 18.153 -47.024 21.943 1 70.06 ? O1B ANP 1101 A 1 HETATM 7 O O2B ANP . . . E 3 18.83 -46.804 24.328 1 90.73 ? O2B ANP 1101 A 1 HETATM 8 N N3B ANP . . . E 3 16.62 -45.587 23.437 1 63.81 ? N3B ANP 1101 A 1 HETATM 9 P PA ANP . . . E 3 17.092 -49.165 24.881 1 84.15 ? PA ANP 1101 A 1 HETATM 10 O O1A ANP . . . E 3 18.192 -48.646 25.73 1 87.36 -1 O1A ANP 1101 A 1 HETATM 11 O O2A ANP . . . E 3 15.75 -49.332 25.6 1 77.29 ? O2A ANP 1101 A 1 HETATM 12 O O3A ANP . . . E 3 16.808 -48.228 23.631 1 83.48 ? O3A ANP 1101 A 1 HETATM 13 O O5' ANP . . . E 3 17.584 -50.522 24.227 1 80.24 ? O5' ANP 1101 A 1 HETATM 14 C C5' ANP . . . E 3 18.885 -50.571 23.611 1 71.83 ? C5' ANP 1101 A 1 HETATM 15 C C4' ANP . . . E 3 18.865 -51.421 22.363 1 66.7 ? C4' ANP 1101 A 1 HETATM 16 O O4' ANP . . . E 3 17.639 -52.176 22.284 1 71 ? O4' ANP 1101 A 1 HETATM 17 C C3' ANP . . . E 3 18.993 -50.652 21.04 1 65.28 ? C3' ANP 1101 A 1 HETATM 18 O O3' ANP . . . E 3 20.211 -50.968 20.379 1 62.36 ? O3' ANP 1101 A 1 HETATM 19 C C2' ANP . . . E 3 17.766 -51.098 20.226 1 72.59 ? C2' ANP 1101 A 1 HETATM 20 O O2' ANP . . . E 3 18.077 -51.334 18.857 1 72.3 ? O2' ANP 1101 A 1 HETATM 21 C C1' ANP . . . E 3 17.379 -52.401 20.918 1 75.09 ? C1' ANP 1101 A 1 HETATM 22 N N9 ANP . . . E 3 15.977 -52.782 20.751 1 72.09 ? N9 ANP 1101 A 1 HETATM 23 C C8 ANP . . . E 3 14.893 -52.262 21.413 1 66.21 ? C8 ANP 1101 A 1 HETATM 24 N N7 ANP . . . E 3 13.754 -52.802 21.048 1 61.65 ? N7 ANP 1101 A 1 HETATM 25 C C5 ANP . . . E 3 14.104 -53.731 20.087 1 55.3 ? C5 ANP 1101 A 1 HETATM 26 C C6 ANP . . . E 3 13.357 -54.632 19.311 1 43.01 ? C6 ANP 1101 A 1 HETATM 27 N N6 ANP . . . E 3 12.027 -54.749 19.387 1 41.93 ? N6 ANP 1101 A 1 HETATM 28 N N1 ANP . . . E 3 14.023 -55.423 18.441 1 40.24 ? N1 ANP 1101 A 1 HETATM 29 C C2 ANP . . . E 3 15.356 -55.311 18.359 1 51.49 ? C2 ANP 1101 A 1 HETATM 30 N N3 ANP . . . E 3 16.167 -54.498 19.04 1 59.07 ? N3 ANP 1101 A 1 HETATM 31 C C4 ANP . . . E 3 15.486 -53.73 19.89 1 63.88 ? C4 ANP 1101 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 519 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #