data_4RIX
#
_model_server_result.job_id            r7pjUtwPAFqWEQ1dFRuezg 
_model_server_result.datetime_utc      '2025-07-01 21:52:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rix 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1101}' 
#
_entry.id    4RIX 
#
_exptl.entry_id    4RIX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.09 
_cell.angle_gamma         90 
_cell.entry_id            4RIX 
_cell.length_a            64.649 
_cell.length_b            155.053 
_cell.length_c            86.857 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RIX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H 1 1 
C,D,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 145 A ASN 820 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 A OD2 ASP 158 A ASP 833 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc3 E O3A ANP . A ANP 1101 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc4 G O1B ADP . B ADP 1001 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc5 C OD1 ASN 145 C ASN 820 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 C OD2 ASP 158 C ASP 833 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc7 I O3A ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc8 I O2A ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc9 I O3G ANP . C ANP 1101 1_555 J MG MG . C MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc10 D OD1 ASN 165 D ASN 818 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc11 K O2A ADP . D ADP 1001 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc12 K O2B ADP . D ADP 1001 1_555 L MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 57 n n 
PG O2G ANP sing 58 n n 
PG O3G ANP sing 59 n n 
PG N3B ANP sing 60 n n 
O2G HOG2 ANP sing 61 n n 
O3G HOG3 ANP sing 62 n n 
PB O1B ANP doub 63 n n 
PB O2B ANP sing 64 n n 
PB N3B ANP sing 65 n n 
PB O3A ANP sing 66 n n 
O2B HOB2 ANP sing 67 n n 
N3B HNB1 ANP sing 68 n n 
PA O1A ANP doub 69 n n 
PA O2A ANP sing 70 n n 
PA O3A ANP sing 71 n n 
PA O5' ANP sing 72 n n 
O2A HOA2 ANP sing 73 n n 
O5' C5' ANP sing 74 n n 
C5' C4' ANP sing 75 n n 
C5' "H5'1" ANP sing 76 n n 
C5' "H5'2" ANP sing 77 n n 
C4' O4' ANP sing 78 n n 
C4' C3' ANP sing 79 n n 
C4' H4' ANP sing 80 n n 
O4' C1' ANP sing 81 n n 
C3' O3' ANP sing 82 n n 
C3' C2' ANP sing 83 n n 
C3' H3' ANP sing 84 n n 
O3' HO3' ANP sing 85 n n 
C2' O2' ANP sing 86 n n 
C2' C1' ANP sing 87 n n 
C2' H2' ANP sing 88 n n 
O2' HO2' ANP sing 89 n n 
C1' N9 ANP sing 90 n n 
C1' H1' ANP sing 91 n n 
N9 C8 ANP sing 92 n y 
N9 C4 ANP sing 93 n y 
C8 N7 ANP doub 94 n y 
C8 H8 ANP sing 95 n n 
N7 C5 ANP sing 96 n y 
C5 C6 ANP sing 97 n y 
C5 C4 ANP doub 98 n y 
C6 N6 ANP sing 99 n n 
C6 N1 ANP doub 100 n y 
N6 HN61 ANP sing 101 n n 
N6 HN62 ANP sing 102 n n 
N1 C2 ANP sing 103 n y 
C2 N3 ANP doub 104 n y 
C2 H2 ANP sing 105 n n 
N3 C4 ANP sing 106 n y 
#
_atom_sites.entry_id                     4RIX 
_atom_sites.fract_transf_matrix[1][1]    0.015468 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005966 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006449 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01234 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 1101 1 ANP ANP . 
F 4 MG A 1 1102 2 MG MG . 
G 5 ADP B 1 1001 1 ADP ADP . 
H 4 MG B 1 1002 2 MG MG . 
I 3 ANP C 1 1101 1 ANP ANP . 
J 4 MG C 1 1102 2 MG MG . 
K 5 ADP D 1 1001 1 ADP ADP . 
L 4 MG D 1 1002 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 3 44.552 20.51 -47.675 1 35.81 ? PG ANP 1101 C 1 
HETATM 2 O O1G ANP . . . I 3 46.016 20.801 -47.596 1 38.91 ? O1G ANP 1101 C 1 
HETATM 3 O O2G ANP . . . I 3 44.343 18.948 -47.758 1 46.26 ? O2G ANP 1101 C 1 
HETATM 4 O O3G ANP . . . I 3 43.952 21.171 -48.982 1 46.44 ? O3G ANP 1101 C 1 
HETATM 5 P PB ANP . . . I 3 44.458 22.362 -45.488 1 39.53 ? PB ANP 1101 C 1 
HETATM 6 O O1B ANP . . . I 3 43.971 22.342 -44.076 1 50.77 ? O1B ANP 1101 C 1 
HETATM 7 O O2B ANP . . . I 3 46.013 22.233 -45.502 1 42.06 ? O2B ANP 1101 C 1 
HETATM 8 N N3B ANP . . . I 3 43.73 21.078 -46.302 1 51.85 ? N3B ANP 1101 C 1 
HETATM 9 P PA ANP . . . I 3 44.845 24.62 -47.109 1 44.14 ? PA ANP 1101 C 1 
HETATM 10 O O1A ANP . . . I 3 46.216 24.11 -47.336 1 48.02 -1 O1A ANP 1101 C 1 
HETATM 11 O O2A ANP . . . I 3 44.024 24.759 -48.392 1 46.65 ? O2A ANP 1101 C 1 
HETATM 12 O O3A ANP . . . I 3 43.99 23.714 -46.12 1 67.1 ? O3A ANP 1101 C 1 
HETATM 13 O O5' ANP . . . I 3 44.955 25.998 -46.33 1 60.61 ? O5' ANP 1101 C 1 
HETATM 14 C C5' ANP . . . I 3 45.638 26.063 -45.062 1 53.58 ? C5' ANP 1101 C 1 
HETATM 15 C C4' ANP . . . I 3 44.853 26.885 -44.066 1 42.84 ? C4' ANP 1101 C 1 
HETATM 16 O O4' ANP . . . I 3 43.885 27.713 -44.746 1 44.99 ? O4' ANP 1101 C 1 
HETATM 17 C C3' ANP . . . I 3 44.08 26.077 -43.013 1 38.04 ? C3' ANP 1101 C 1 
HETATM 18 O O3' ANP . . . I 3 44.338 26.569 -41.705 1 48.03 ? O3' ANP 1101 C 1 
HETATM 19 C C2' ANP . . . I 3 42.616 26.282 -43.417 1 41.15 ? C2' ANP 1101 C 1 
HETATM 20 O O2' ANP . . . I 3 41.743 26.248 -42.293 1 47.8 ? O2' ANP 1101 C 1 
HETATM 21 C C1' ANP . . . I 3 42.67 27.677 -44.028 1 45.14 ? C1' ANP 1101 C 1 
HETATM 22 N N9 ANP . . . I 3 41.578 27.979 -44.94 1 46.7 ? N9 ANP 1101 C 1 
HETATM 23 C C8 ANP . . . I 3 41.308 27.36 -46.138 1 50.74 ? C8 ANP 1101 C 1 
HETATM 24 N N7 ANP . . . I 3 40.258 27.836 -46.762 1 46.4 ? N7 ANP 1101 C 1 
HETATM 25 C C5 ANP . . . I 3 39.8 28.844 -45.917 1 41.92 ? C5 ANP 1101 C 1 
HETATM 26 C C6 ANP . . . I 3 38.716 29.732 -46.009 1 46.6 ? C6 ANP 1101 C 1 
HETATM 27 N N6 ANP . . . I 3 37.858 29.756 -47.03 1 52.3 ? N6 ANP 1101 C 1 
HETATM 28 N N1 ANP . . . I 3 38.541 30.612 -44.998 1 40.87 ? N1 ANP 1101 C 1 
HETATM 29 C C2 ANP . . . I 3 39.4 30.594 -43.97 1 41.92 ? C2 ANP 1101 C 1 
HETATM 30 N N3 ANP . . . I 3 40.458 29.8 -43.781 1 44.84 ? N3 ANP 1101 C 1 
HETATM 31 C C4 ANP . . . I 3 40.606 28.939 -44.798 1 41.89 ? C4 ANP 1101 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#