data_4RJD # _model_server_result.job_id ZqvUA_g37vhjuCUqIQnf7w _model_server_result.datetime_utc '2024-11-14 19:17:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":204}' # _entry.id 4RJD # _exptl.entry_id 4RJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.496 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPYL]-2-TRIFLUOROMETHYL-10H-PHENOTHIAZINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93 _cell.angle_gamma 90 _cell.entry_id 4RJD _cell.length_a 24.606 _cell.length_b 85.637 _cell.length_c 35.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 12 A ASP 93 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A OD1 ASP 14 A ASP 95 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc3 A OD1 ASN 16 A ASN 97 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 A O TYR 18 A TYR 99 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc5 A OE1 GLU 23 A GLU 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc6 A OE2 GLU 23 A GLU 104 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc7 A OD1 ASP 48 A ASP 129 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 A OD1 ASP 50 A ASP 131 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc9 A OD1 ASP 52 A ASP 133 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc10 A O GLN 54 A GLN 135 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc11 A OE2 GLU 59 A GLU 140 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc12 A OE1 GLU 59 A GLU 140 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc13 C CA CA . A CA 201 1_555 P O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc14 D CA CA . A CA 202 1_555 P O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc15 B OD1 ASP 12 B ASP 93 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc16 B OD1 ASP 14 B ASP 95 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc17 B OD1 ASN 16 B ASN 97 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc18 B O TYR 18 B TYR 99 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc19 B OE1 GLU 23 B GLU 104 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc20 B OE2 GLU 23 B GLU 104 1_555 J CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc21 B OD1 ASP 48 B ASP 129 1_555 K CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc22 B OD1 ASP 50 B ASP 131 1_555 K CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc23 B OD1 ASP 52 B ASP 133 1_555 K CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc24 B O GLN 54 B GLN 135 1_555 K CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc25 B OE1 GLU 59 B GLU 140 1_555 K CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc26 B OE2 GLU 59 B GLU 140 1_555 K CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc27 J CA CA . B CA 201 1_555 Q O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc28 K CA CA . B CA 202 1_555 Q O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? # _chem_comp.formula 'C21 H24 F3 N3 S' _chem_comp.formula_weight 407.496 _chem_comp.id TFP _chem_comp.mon_nstd_flag . _chem_comp.name 10-[3-(4-METHYL-PIPERAZIN-1-YL)-PROPYL]-2-TRIFLUOROMETHYL-10H-PHENOTHIAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TFP doub 304 n y C1 C6 TFP sing 305 n y C1 C21 TFP sing 306 n n C2 C3 TFP sing 307 n y C2 H2 TFP sing 308 n n C3 C4 TFP doub 309 n y C3 H3 TFP sing 310 n n C4 C5 TFP sing 311 n y C4 S TFP sing 312 n n C5 C6 TFP doub 313 n y C5 N1 TFP sing 314 n n C6 H6 TFP sing 315 n n S C7 TFP sing 316 n n C7 C8 TFP doub 317 n y C7 C12 TFP sing 318 n y C8 C9 TFP sing 319 n y C8 H8 TFP sing 320 n n C9 C10 TFP doub 321 n y C9 H9 TFP sing 322 n n C10 C11 TFP sing 323 n y C10 H10 TFP sing 324 n n C11 C12 TFP doub 325 n y C11 H11 TFP sing 326 n n C12 N1 TFP sing 327 n n N1 C13 TFP sing 328 n n C13 C14 TFP sing 329 n n C13 H131 TFP sing 330 n n C13 H132 TFP sing 331 n n C14 C15 TFP sing 332 n n C14 H141 TFP sing 333 n n C14 H142 TFP sing 334 n n C15 N2 TFP sing 335 n n C15 H151 TFP sing 336 n n C15 H152 TFP sing 337 n n N2 C16 TFP sing 338 n n N2 C19 TFP sing 339 n n C16 C17 TFP sing 340 n n C16 H161 TFP sing 341 n n C16 H162 TFP sing 342 n n C17 N3 TFP sing 343 n n C17 H171 TFP sing 344 n n C17 H172 TFP sing 345 n n N3 C18 TFP sing 346 n n N3 C20 TFP sing 347 n n C18 C19 TFP sing 348 n n C18 H181 TFP sing 349 n n C18 H182 TFP sing 350 n n C19 H191 TFP sing 351 n n C19 H192 TFP sing 352 n n C20 H201 TFP sing 353 n n C20 H202 TFP sing 354 n n C20 H203 TFP sing 355 n n C21 F1 TFP sing 356 n n C21 F2 TFP sing 357 n n C21 F3 TFP sing 358 n n # _atom_sites.entry_id 4RJD _atom_sites.fract_transf_matrix[1][1] 0.04064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002131 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 149 CA CA . D 2 CA A 1 202 150 CA CA . E 3 TFP A 1 203 3 TFP TFP . F 3 TFP A 1 204 4 TFP TFP . G 4 1PE A 1 205 5 1PE 1PE . H 5 CL A 1 206 7 CL CL . I 6 OXL A 1 207 9 OXL OXL . J 2 CA B 1 201 149 CA CA . K 2 CA B 1 202 150 CA CA . L 3 TFP B 1 203 1 TFP TFP . M 3 TFP B 1 204 2 TFP TFP . N 7 SCN B 1 205 6 SCN SCN . O 5 CL B 1 206 8 CL CL . P 8 HOH A 1 301 1 HOH HOH . P 8 HOH A 2 302 5 HOH HOH . P 8 HOH A 3 303 6 HOH HOH . P 8 HOH A 4 304 7 HOH HOH . P 8 HOH A 5 305 8 HOH HOH . P 8 HOH A 6 306 9 HOH HOH . P 8 HOH A 7 307 11 HOH HOH . P 8 HOH A 8 308 15 HOH HOH . P 8 HOH A 9 309 18 HOH HOH . P 8 HOH A 10 310 19 HOH HOH . P 8 HOH A 11 311 20 HOH HOH . P 8 HOH A 12 312 22 HOH HOH . P 8 HOH A 13 313 25 HOH HOH . P 8 HOH A 14 314 26 HOH HOH . P 8 HOH A 15 315 31 HOH HOH . P 8 HOH A 16 316 32 HOH HOH . P 8 HOH A 17 317 34 HOH HOH . P 8 HOH A 18 318 36 HOH HOH . P 8 HOH A 19 319 38 HOH HOH . P 8 HOH A 20 320 41 HOH HOH . P 8 HOH A 21 321 43 HOH HOH . P 8 HOH A 22 322 47 HOH HOH . P 8 HOH A 23 323 49 HOH HOH . P 8 HOH A 24 324 50 HOH HOH . P 8 HOH A 25 325 55 HOH HOH . P 8 HOH A 26 326 56 HOH HOH . P 8 HOH A 27 327 57 HOH HOH . P 8 HOH A 28 328 59 HOH HOH . P 8 HOH A 29 329 60 HOH HOH . P 8 HOH A 30 330 61 HOH HOH . P 8 HOH A 31 331 63 HOH HOH . P 8 HOH A 32 332 67 HOH HOH . P 8 HOH A 33 333 68 HOH HOH . P 8 HOH A 34 334 77 HOH HOH . P 8 HOH A 35 335 80 HOH HOH . P 8 HOH A 36 336 86 HOH HOH . P 8 HOH A 37 337 89 HOH HOH . Q 8 HOH B 1 301 2 HOH HOH . Q 8 HOH B 2 302 3 HOH HOH . Q 8 HOH B 3 303 4 HOH HOH . Q 8 HOH B 4 304 10 HOH HOH . Q 8 HOH B 5 305 12 HOH HOH . Q 8 HOH B 6 306 13 HOH HOH . Q 8 HOH B 7 307 14 HOH HOH . Q 8 HOH B 8 308 16 HOH HOH . Q 8 HOH B 9 309 17 HOH HOH . Q 8 HOH B 10 310 21 HOH HOH . Q 8 HOH B 11 311 23 HOH HOH . Q 8 HOH B 12 312 24 HOH HOH . Q 8 HOH B 13 313 27 HOH HOH . Q 8 HOH B 14 314 28 HOH HOH . Q 8 HOH B 15 315 29 HOH HOH . Q 8 HOH B 16 316 30 HOH HOH . Q 8 HOH B 17 317 33 HOH HOH . Q 8 HOH B 18 318 35 HOH HOH . Q 8 HOH B 19 319 37 HOH HOH . Q 8 HOH B 20 320 39 HOH HOH . Q 8 HOH B 21 321 40 HOH HOH . Q 8 HOH B 22 322 42 HOH HOH . Q 8 HOH B 23 323 45 HOH HOH . Q 8 HOH B 24 324 46 HOH HOH . Q 8 HOH B 25 325 48 HOH HOH . Q 8 HOH B 26 326 51 HOH HOH . Q 8 HOH B 27 327 58 HOH HOH . Q 8 HOH B 28 328 62 HOH HOH . Q 8 HOH B 29 329 64 HOH HOH . Q 8 HOH B 30 330 65 HOH HOH . Q 8 HOH B 31 331 69 HOH HOH . Q 8 HOH B 32 332 70 HOH HOH . Q 8 HOH B 33 333 72 HOH HOH . Q 8 HOH B 34 334 74 HOH HOH . Q 8 HOH B 35 335 75 HOH HOH . Q 8 HOH B 36 336 76 HOH HOH . Q 8 HOH B 37 337 78 HOH HOH . Q 8 HOH B 38 338 79 HOH HOH . Q 8 HOH B 39 339 81 HOH HOH . Q 8 HOH B 40 340 82 HOH HOH . Q 8 HOH B 41 341 83 HOH HOH . Q 8 HOH B 42 342 84 HOH HOH . Q 8 HOH B 43 343 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TFP . . . M 3 13.658 31.033 14.436 1 32.71 ? C1 TFP 204 B 1 HETATM 2 C C2 TFP . . . M 3 13.58 31.313 13.064 1 29.42 ? C2 TFP 204 B 1 HETATM 3 C C3 TFP . . . M 3 14.188 30.474 12.119 1 27.88 ? C3 TFP 204 B 1 HETATM 4 C C4 TFP . . . M 3 14.856 29.331 12.569 1 25.53 ? C4 TFP 204 B 1 HETATM 5 C C5 TFP . . . M 3 14.918 29.087 13.937 1 26.11 ? C5 TFP 204 B 1 HETATM 6 C C6 TFP . . . M 3 14.316 29.91 14.884 1 22.11 ? C6 TFP 204 B 1 HETATM 7 S S TFP . . . M 3 15.642 28.205 11.581 1 34.2 ? S TFP 204 B 1 HETATM 8 C C7 TFP . . . M 3 15.392 26.629 12.146 1 33.09 ? C7 TFP 204 B 1 HETATM 9 C C8 TFP . . . M 3 15.147 25.528 11.33 1 35.17 ? C8 TFP 204 B 1 HETATM 10 C C9 TFP . . . M 3 14.947 24.269 11.904 1 34.57 ? C9 TFP 204 B 1 HETATM 11 C C10 TFP . . . M 3 14.979 24.077 13.29 1 31.76 ? C10 TFP 204 B 1 HETATM 12 C C11 TFP . . . M 3 15.218 25.157 14.117 1 30.06 ? C11 TFP 204 B 1 HETATM 13 C C12 TFP . . . M 3 15.424 26.418 13.52 1 32.53 ? C12 TFP 204 B 1 HETATM 14 N N1 TFP . . . M 3 15.694 27.748 14.391 1 32.51 ? N1 TFP 204 B 1 HETATM 15 C C13 TFP . . . M 3 16.099 27.588 15.783 1 36.41 ? C13 TFP 204 B 1 HETATM 16 C C14 TFP . . . M 3 17.593 27.252 15.802 1 36.98 ? C14 TFP 204 B 1 HETATM 17 C C15 TFP . . . M 3 18.354 28.261 14.938 1 39.19 ? C15 TFP 204 B 1 HETATM 18 N N2 TFP . . . M 3 19.544 27.657 14.349 1 37.44 ? N2 TFP 204 B 1 HETATM 19 C C16 TFP . . . M 3 20.306 26.909 15.329 1 46.56 ? C16 TFP 204 B 1 HETATM 20 C C17 TFP . . . M 3 21.514 26.234 14.671 1 47.86 ? C17 TFP 204 B 1 HETATM 21 N N3 TFP . . . M 3 22.344 27.15 13.907 1 45.49 ? N3 TFP 204 B 1 HETATM 22 C C18 TFP . . . M 3 21.595 28.07 13.068 1 41.53 ? C18 TFP 204 B 1 HETATM 23 C C19 TFP . . . M 3 20.378 28.685 13.758 1 31.08 ? C19 TFP 204 B 1 HETATM 24 C C20 TFP . . . M 3 23.216 27.898 14.794 1 53.45 ? C20 TFP 204 B 1 HETATM 25 C C21 TFP . . . M 3 12.996 31.923 15.486 1 38.92 ? C21 TFP 204 B 1 HETATM 26 F F1 TFP . . . M 3 12.056 32.672 14.861 1 40.95 ? F1 TFP 204 B 1 HETATM 27 F F2 TFP . . . M 3 13.9 32.731 16.083 1 50.18 ? F2 TFP 204 B 1 HETATM 28 F F3 TFP . . . M 3 12.424 31.131 16.44 1 39.42 ? F3 TFP 204 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #