data_4RJI # _model_server_result.job_id rYye0-r3nCVEHspVmo5c4g _model_server_result.datetime_utc '2024-11-28 16:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":603}' # _entry.id 4RJI # _exptl.entry_id 4RJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RJI _cell.length_a 140.647 _cell.length_b 140.647 _cell.length_c 238.877 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 451 A ASP 451 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 A OD1 ASP 478 A ASP 478 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 A O THR 480 A THR 480 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc4 E O2A TPP . A TPP 1000 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc5 E O3B TPP . A TPP 1000 1_555 F MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc6 B OD1 ASP 451 B ASP 451 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc7 B OD1 ASP 478 B ASP 478 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc8 B O THR 480 B THR 480 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc9 G O2A TPP . B TPP 601 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc10 G O3B TPP . B TPP 601 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 C OD1 ASP 451 C ASP 451 1_555 K MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc12 C OD1 ASP 478 C ASP 478 1_555 K MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc13 C O THR 480 C THR 480 1_555 K MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc14 J O2A TPP . C TPP 1000 1_555 K MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc15 J O3B TPP . C TPP 1000 1_555 K MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc16 K MG MG . C MG 1001 1_555 P O HOH . C HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc17 D OD1 ASP 451 D ASP 451 1_555 M MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc18 D OD1 ASP 478 D ASP 478 1_555 M MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc19 D O THR 480 D THR 480 1_555 M MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc20 L O2A TPP . D TPP 1000 1_555 M MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc21 L O3B TPP . D TPP 1000 1_555 M MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 4RJI _atom_sites.fract_transf_matrix[1][1] 0.00711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TPP A 1 1000 1000 TPP TPP . F 3 MG A 1 1001 1001 MG MG . G 2 TPP B 1 601 1000 TPP TPP . H 3 MG B 1 602 1001 MG MG . I 4 PG4 B 1 603 1 PG4 PG4 . J 2 TPP C 1 1000 1000 TPP TPP . K 3 MG C 1 1001 1001 MG MG . L 2 TPP D 1 1000 1000 TPP TPP . M 3 MG D 1 1001 1001 MG MG . N 5 HOH A 1 1101 4 HOH HOH . N 5 HOH A 2 1102 5 HOH HOH . N 5 HOH A 3 1103 29 HOH HOH . O 5 HOH B 1 701 2 HOH HOH . O 5 HOH B 2 702 3 HOH HOH . O 5 HOH B 3 703 6 HOH HOH . O 5 HOH B 4 704 7 HOH HOH . O 5 HOH B 5 705 13 HOH HOH . O 5 HOH B 6 706 28 HOH HOH . P 5 HOH C 1 1101 8 HOH HOH . P 5 HOH C 2 1102 9 HOH HOH . P 5 HOH C 3 1103 11 HOH HOH . P 5 HOH C 4 1104 15 HOH HOH . P 5 HOH C 5 1105 16 HOH HOH . P 5 HOH C 6 1106 20 HOH HOH . P 5 HOH C 7 1107 27 HOH HOH . Q 5 HOH D 1 1101 14 HOH HOH . Q 5 HOH D 2 1102 17 HOH HOH . Q 5 HOH D 3 1103 21 HOH HOH . Q 5 HOH D 4 1104 22 HOH HOH . Q 5 HOH D 5 1105 23 HOH HOH . Q 5 HOH D 6 1106 24 HOH HOH . Q 5 HOH D 7 1107 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . I 4 11.422 -29.859 8.596 1 68.87 ? O1 PG4 603 B 1 HETATM 2 C C1 PG4 . . . I 4 11.406 -31.115 8.024 1 75.11 ? C1 PG4 603 B 1 HETATM 3 C C2 PG4 . . . I 4 12.082 -31.054 6.697 1 84.91 ? C2 PG4 603 B 1 HETATM 4 O O2 PG4 . . . I 4 12.081 -32.291 6.085 1 93.27 ? O2 PG4 603 B 1 HETATM 5 C C3 PG4 . . . I 4 12.272 -32.375 4.717 1 97.43 ? C3 PG4 603 B 1 HETATM 6 C C4 PG4 . . . I 4 12.389 -33.808 4.317 1 99.63 ? C4 PG4 603 B 1 HETATM 7 O O3 PG4 . . . I 4 12.049 -33.984 2.992 1 95.06 ? O3 PG4 603 B 1 HETATM 8 C C5 PG4 . . . I 4 11.885 -35.272 2.524 1 92.15 ? C5 PG4 603 B 1 HETATM 9 C C6 PG4 . . . I 4 11.535 -35.262 1.073 1 86.42 ? C6 PG4 603 B 1 HETATM 10 O O4 PG4 . . . I 4 11.111 -36.515 0.665 1 86.53 ? O4 PG4 603 B 1 HETATM 11 C C7 PG4 . . . I 4 10.58 -36.667 -0.603 1 78.64 ? C7 PG4 603 B 1 HETATM 12 C C8 PG4 . . . I 4 9.954 -38.011 -0.768 1 71.94 ? C8 PG4 603 B 1 HETATM 13 O O5 PG4 . . . I 4 9.643 -38.19 -2.1 1 66.93 ? O5 PG4 603 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #