data_4RK4 # _model_server_result.job_id PXDGt0R_TDvN3T0vVX08Rw _model_server_result.datetime_utc '2024-12-26 13:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4RK4 # _exptl.entry_id 4RK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RK4 _cell.length_a 108.854 _cell.length_b 108.854 _cell.length_c 125.885 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 125.885 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 219 A ASP 269 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 C NA NA . A NA 402 1_555 D O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc3 C NA NA . A NA 402 1_555 D O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc4 C NA NA . A NA 402 1_555 D O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc5 C NA NA . A NA 402 1_555 D O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc6 C NA NA . A NA 402 1_555 D O HOH . A HOH 755 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 C NA NA . A NA 402 1_555 D O HOH . A HOH 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RK4 _atom_sites.fract_transf_matrix[1][1] 0.009187 _atom_sites.fract_transf_matrix[1][2] 0.005304 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 401 1 GLC GLC . C 3 NA A 1 402 1 NA NA . D 4 HOH A 1 501 2 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 5 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 9 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 12 HOH HOH . D 4 HOH A 12 512 13 HOH HOH . D 4 HOH A 13 513 14 HOH HOH . D 4 HOH A 14 514 15 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 18 HOH HOH . D 4 HOH A 18 518 19 HOH HOH . D 4 HOH A 19 519 20 HOH HOH . D 4 HOH A 20 520 21 HOH HOH . D 4 HOH A 21 521 22 HOH HOH . D 4 HOH A 22 522 23 HOH HOH . D 4 HOH A 23 523 24 HOH HOH . D 4 HOH A 24 524 25 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 30 HOH HOH . D 4 HOH A 30 530 31 HOH HOH . D 4 HOH A 31 531 32 HOH HOH . D 4 HOH A 32 532 33 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 35 HOH HOH . D 4 HOH A 35 535 36 HOH HOH . D 4 HOH A 36 536 37 HOH HOH . D 4 HOH A 37 537 38 HOH HOH . D 4 HOH A 38 538 39 HOH HOH . D 4 HOH A 39 539 40 HOH HOH . D 4 HOH A 40 540 41 HOH HOH . D 4 HOH A 41 541 42 HOH HOH . D 4 HOH A 42 542 43 HOH HOH . D 4 HOH A 43 543 44 HOH HOH . D 4 HOH A 44 544 45 HOH HOH . D 4 HOH A 45 545 46 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 48 HOH HOH . D 4 HOH A 48 548 49 HOH HOH . D 4 HOH A 49 549 50 HOH HOH . D 4 HOH A 50 550 51 HOH HOH . D 4 HOH A 51 551 52 HOH HOH . D 4 HOH A 52 552 53 HOH HOH . D 4 HOH A 53 553 54 HOH HOH . D 4 HOH A 54 554 55 HOH HOH . D 4 HOH A 55 555 56 HOH HOH . D 4 HOH A 56 556 57 HOH HOH . D 4 HOH A 57 557 58 HOH HOH . D 4 HOH A 58 558 59 HOH HOH . D 4 HOH A 59 559 60 HOH HOH . D 4 HOH A 60 560 61 HOH HOH . D 4 HOH A 61 561 62 HOH HOH . D 4 HOH A 62 562 63 HOH HOH . D 4 HOH A 63 563 64 HOH HOH . D 4 HOH A 64 564 65 HOH HOH . D 4 HOH A 65 565 66 HOH HOH . D 4 HOH A 66 566 67 HOH HOH . D 4 HOH A 67 567 68 HOH HOH . D 4 HOH A 68 568 69 HOH HOH . D 4 HOH A 69 569 70 HOH HOH . D 4 HOH A 70 570 71 HOH HOH . D 4 HOH A 71 571 72 HOH HOH . D 4 HOH A 72 572 73 HOH HOH . D 4 HOH A 73 573 74 HOH HOH . D 4 HOH A 74 574 75 HOH HOH . D 4 HOH A 75 575 76 HOH HOH . D 4 HOH A 76 576 77 HOH HOH . D 4 HOH A 77 577 78 HOH HOH . D 4 HOH A 78 578 79 HOH HOH . D 4 HOH A 79 579 80 HOH HOH . D 4 HOH A 80 580 81 HOH HOH . D 4 HOH A 81 581 82 HOH HOH . D 4 HOH A 82 582 83 HOH HOH . D 4 HOH A 83 583 84 HOH HOH . D 4 HOH A 84 584 85 HOH HOH . D 4 HOH A 85 585 87 HOH HOH . D 4 HOH A 86 586 88 HOH HOH . D 4 HOH A 87 587 89 HOH HOH . D 4 HOH A 88 588 90 HOH HOH . D 4 HOH A 89 589 91 HOH HOH . D 4 HOH A 90 590 92 HOH HOH . D 4 HOH A 91 591 93 HOH HOH . D 4 HOH A 92 592 94 HOH HOH . D 4 HOH A 93 593 95 HOH HOH . D 4 HOH A 94 594 96 HOH HOH . D 4 HOH A 95 595 97 HOH HOH . D 4 HOH A 96 596 98 HOH HOH . D 4 HOH A 97 597 99 HOH HOH . D 4 HOH A 98 598 100 HOH HOH . D 4 HOH A 99 599 101 HOH HOH . D 4 HOH A 100 600 102 HOH HOH . D 4 HOH A 101 601 103 HOH HOH . D 4 HOH A 102 602 104 HOH HOH . D 4 HOH A 103 603 105 HOH HOH . D 4 HOH A 104 604 106 HOH HOH . D 4 HOH A 105 605 107 HOH HOH . D 4 HOH A 106 606 108 HOH HOH . D 4 HOH A 107 607 109 HOH HOH . D 4 HOH A 108 608 110 HOH HOH . D 4 HOH A 109 609 111 HOH HOH . D 4 HOH A 110 610 112 HOH HOH . D 4 HOH A 111 611 113 HOH HOH . D 4 HOH A 112 612 114 HOH HOH . D 4 HOH A 113 613 115 HOH HOH . D 4 HOH A 114 614 116 HOH HOH . D 4 HOH A 115 615 117 HOH HOH . D 4 HOH A 116 616 118 HOH HOH . D 4 HOH A 117 617 119 HOH HOH . D 4 HOH A 118 618 120 HOH HOH . D 4 HOH A 119 619 122 HOH HOH . D 4 HOH A 120 620 123 HOH HOH . D 4 HOH A 121 621 124 HOH HOH . D 4 HOH A 122 622 125 HOH HOH . D 4 HOH A 123 623 126 HOH HOH . D 4 HOH A 124 624 127 HOH HOH . D 4 HOH A 125 625 128 HOH HOH . D 4 HOH A 126 626 129 HOH HOH . D 4 HOH A 127 627 130 HOH HOH . D 4 HOH A 128 628 131 HOH HOH . D 4 HOH A 129 629 132 HOH HOH . D 4 HOH A 130 630 133 HOH HOH . D 4 HOH A 131 631 134 HOH HOH . D 4 HOH A 132 632 135 HOH HOH . D 4 HOH A 133 633 136 HOH HOH . D 4 HOH A 134 634 137 HOH HOH . D 4 HOH A 135 635 138 HOH HOH . D 4 HOH A 136 636 139 HOH HOH . D 4 HOH A 137 637 140 HOH HOH . D 4 HOH A 138 638 141 HOH HOH . D 4 HOH A 139 639 142 HOH HOH . D 4 HOH A 140 640 143 HOH HOH . D 4 HOH A 141 641 144 HOH HOH . D 4 HOH A 142 642 145 HOH HOH . D 4 HOH A 143 643 147 HOH HOH . D 4 HOH A 144 644 148 HOH HOH . D 4 HOH A 145 645 149 HOH HOH . D 4 HOH A 146 646 151 HOH HOH . D 4 HOH A 147 647 152 HOH HOH . D 4 HOH A 148 648 153 HOH HOH . D 4 HOH A 149 649 154 HOH HOH . D 4 HOH A 150 650 155 HOH HOH . D 4 HOH A 151 651 156 HOH HOH . D 4 HOH A 152 652 157 HOH HOH . D 4 HOH A 153 653 158 HOH HOH . D 4 HOH A 154 654 159 HOH HOH . D 4 HOH A 155 655 160 HOH HOH . D 4 HOH A 156 656 161 HOH HOH . D 4 HOH A 157 657 162 HOH HOH . D 4 HOH A 158 658 163 HOH HOH . D 4 HOH A 159 659 164 HOH HOH . D 4 HOH A 160 660 165 HOH HOH . D 4 HOH A 161 661 166 HOH HOH . D 4 HOH A 162 662 167 HOH HOH . D 4 HOH A 163 663 168 HOH HOH . D 4 HOH A 164 664 169 HOH HOH . D 4 HOH A 165 665 170 HOH HOH . D 4 HOH A 166 666 171 HOH HOH . D 4 HOH A 167 667 172 HOH HOH . D 4 HOH A 168 668 173 HOH HOH . D 4 HOH A 169 669 174 HOH HOH . D 4 HOH A 170 670 175 HOH HOH . D 4 HOH A 171 671 176 HOH HOH . D 4 HOH A 172 672 177 HOH HOH . D 4 HOH A 173 673 178 HOH HOH . D 4 HOH A 174 674 179 HOH HOH . D 4 HOH A 175 675 180 HOH HOH . D 4 HOH A 176 676 181 HOH HOH . D 4 HOH A 177 677 182 HOH HOH . D 4 HOH A 178 678 186 HOH HOH . D 4 HOH A 179 679 188 HOH HOH . D 4 HOH A 180 680 189 HOH HOH . D 4 HOH A 181 681 190 HOH HOH . D 4 HOH A 182 682 191 HOH HOH . D 4 HOH A 183 683 192 HOH HOH . D 4 HOH A 184 684 193 HOH HOH . D 4 HOH A 185 685 194 HOH HOH . D 4 HOH A 186 686 195 HOH HOH . D 4 HOH A 187 687 197 HOH HOH . D 4 HOH A 188 688 198 HOH HOH . D 4 HOH A 189 689 199 HOH HOH . D 4 HOH A 190 690 200 HOH HOH . D 4 HOH A 191 691 201 HOH HOH . D 4 HOH A 192 692 203 HOH HOH . D 4 HOH A 193 693 204 HOH HOH . D 4 HOH A 194 694 205 HOH HOH . D 4 HOH A 195 695 206 HOH HOH . D 4 HOH A 196 696 207 HOH HOH . D 4 HOH A 197 697 208 HOH HOH . D 4 HOH A 198 698 210 HOH HOH . D 4 HOH A 199 699 211 HOH HOH . D 4 HOH A 200 700 212 HOH HOH . D 4 HOH A 201 701 213 HOH HOH . D 4 HOH A 202 702 215 HOH HOH . D 4 HOH A 203 703 216 HOH HOH . D 4 HOH A 204 704 217 HOH HOH . D 4 HOH A 205 705 218 HOH HOH . D 4 HOH A 206 706 219 HOH HOH . D 4 HOH A 207 707 220 HOH HOH . D 4 HOH A 208 708 222 HOH HOH . D 4 HOH A 209 709 223 HOH HOH . D 4 HOH A 210 710 224 HOH HOH . D 4 HOH A 211 711 225 HOH HOH . D 4 HOH A 212 712 226 HOH HOH . D 4 HOH A 213 713 227 HOH HOH . D 4 HOH A 214 714 228 HOH HOH . D 4 HOH A 215 715 229 HOH HOH . D 4 HOH A 216 716 230 HOH HOH . D 4 HOH A 217 717 231 HOH HOH . D 4 HOH A 218 718 232 HOH HOH . D 4 HOH A 219 719 233 HOH HOH . D 4 HOH A 220 720 234 HOH HOH . D 4 HOH A 221 721 235 HOH HOH . D 4 HOH A 222 722 237 HOH HOH . D 4 HOH A 223 723 238 HOH HOH . D 4 HOH A 224 724 239 HOH HOH . D 4 HOH A 225 725 240 HOH HOH . D 4 HOH A 226 726 243 HOH HOH . D 4 HOH A 227 727 245 HOH HOH . D 4 HOH A 228 728 246 HOH HOH . D 4 HOH A 229 729 247 HOH HOH . D 4 HOH A 230 730 248 HOH HOH . D 4 HOH A 231 731 249 HOH HOH . D 4 HOH A 232 732 250 HOH HOH . D 4 HOH A 233 733 251 HOH HOH . D 4 HOH A 234 734 252 HOH HOH . D 4 HOH A 235 735 253 HOH HOH . D 4 HOH A 236 736 254 HOH HOH . D 4 HOH A 237 737 255 HOH HOH . D 4 HOH A 238 738 256 HOH HOH . D 4 HOH A 239 739 257 HOH HOH . D 4 HOH A 240 740 258 HOH HOH . D 4 HOH A 241 741 259 HOH HOH . D 4 HOH A 242 742 260 HOH HOH . D 4 HOH A 243 743 261 HOH HOH . D 4 HOH A 244 744 262 HOH HOH . D 4 HOH A 245 745 263 HOH HOH . D 4 HOH A 246 746 264 HOH HOH . D 4 HOH A 247 747 265 HOH HOH . D 4 HOH A 248 748 266 HOH HOH . D 4 HOH A 249 749 267 HOH HOH . D 4 HOH A 250 750 268 HOH HOH . D 4 HOH A 251 751 269 HOH HOH . D 4 HOH A 252 752 270 HOH HOH . D 4 HOH A 253 753 271 HOH HOH . D 4 HOH A 254 754 272 HOH HOH . D 4 HOH A 255 755 273 HOH HOH . D 4 HOH A 256 756 274 HOH HOH . D 4 HOH A 257 757 275 HOH HOH . D 4 HOH A 258 758 276 HOH HOH . D 4 HOH A 259 759 277 HOH HOH . D 4 HOH A 260 760 278 HOH HOH . D 4 HOH A 261 761 279 HOH HOH . D 4 HOH A 262 762 280 HOH HOH . D 4 HOH A 263 763 281 HOH HOH . D 4 HOH A 264 764 282 HOH HOH . D 4 HOH A 265 765 283 HOH HOH . D 4 HOH A 266 766 284 HOH HOH . D 4 HOH A 267 767 285 HOH HOH . D 4 HOH A 268 768 286 HOH HOH . D 4 HOH A 269 769 287 HOH HOH . D 4 HOH A 270 770 288 HOH HOH . D 4 HOH A 271 771 290 HOH HOH . D 4 HOH A 272 772 291 HOH HOH . D 4 HOH A 273 773 292 HOH HOH . D 4 HOH A 274 774 293 HOH HOH . D 4 HOH A 275 775 294 HOH HOH . D 4 HOH A 276 776 295 HOH HOH . D 4 HOH A 277 777 296 HOH HOH . D 4 HOH A 278 778 297 HOH HOH . D 4 HOH A 279 779 298 HOH HOH . D 4 HOH A 280 780 299 HOH HOH . D 4 HOH A 281 781 300 HOH HOH . D 4 HOH A 282 782 301 HOH HOH . D 4 HOH A 283 783 302 HOH HOH . D 4 HOH A 284 784 303 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.97 _atom_site.Cartn_y 0.838 _atom_site.Cartn_z 54.398 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #