data_4RK8 # _model_server_result.job_id aXS_35J05P2wsYIJ4BxN8w _model_server_result.datetime_utc '2024-11-08 12:54:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4RK8 # _exptl.entry_id 4RK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RK8 _cell.length_a 90.82 _cell.length_b 90.82 _cell.length_c 122.851 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 322 n y N1 C6 ORO sing 323 n y N1 HN1 ORO sing 324 n n C2 O2 ORO doub 325 n n C2 N3 ORO sing 326 n y N3 C4 ORO sing 327 n y N3 HN3 ORO sing 328 n n C4 O4 ORO doub 329 n n C4 C5 ORO sing 330 n y C5 C6 ORO doub 331 n y C5 H5 ORO sing 332 n n C6 C7 ORO sing 333 n n C7 O71 ORO doub 334 n n C7 O72 ORO sing 335 n n O72 HO7 ORO sing 336 n n # _atom_sites.entry_id 4RK8 _atom_sites.fract_transf_matrix[1][1] 0.011011 _atom_sites.fract_transf_matrix[1][2] 0.006357 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 3RV A 1 403 1 3RV 356 . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 5 SO4 A 1 406 3 SO4 SO4 . H 5 SO4 A 1 407 4 SO4 SO4 . I 5 SO4 A 1 408 5 SO4 SO4 . J 5 SO4 A 1 409 6 SO4 SO4 . K 5 SO4 A 1 410 7 SO4 SO4 . L 5 SO4 A 1 411 8 SO4 SO4 . M 5 SO4 A 1 412 9 SO4 SO4 . N 5 SO4 A 1 413 10 SO4 SO4 . O 5 SO4 A 1 414 11 SO4 SO4 . P 6 HOH A 1 501 1 HOH HOH . P 6 HOH A 2 502 2 HOH HOH . P 6 HOH A 3 503 3 HOH HOH . P 6 HOH A 4 504 4 HOH HOH . P 6 HOH A 5 505 5 HOH HOH . P 6 HOH A 6 506 6 HOH HOH . P 6 HOH A 7 507 7 HOH HOH . P 6 HOH A 8 508 8 HOH HOH . P 6 HOH A 9 509 9 HOH HOH . P 6 HOH A 10 510 10 HOH HOH . P 6 HOH A 11 511 11 HOH HOH . P 6 HOH A 12 512 12 HOH HOH . P 6 HOH A 13 513 14 HOH HOH . P 6 HOH A 14 514 15 HOH HOH . P 6 HOH A 15 515 16 HOH HOH . P 6 HOH A 16 516 17 HOH HOH . P 6 HOH A 17 517 18 HOH HOH . P 6 HOH A 18 518 20 HOH HOH . P 6 HOH A 19 519 21 HOH HOH . P 6 HOH A 20 520 22 HOH HOH . P 6 HOH A 21 521 24 HOH HOH . P 6 HOH A 22 522 27 HOH HOH . P 6 HOH A 23 523 28 HOH HOH . P 6 HOH A 24 524 29 HOH HOH . P 6 HOH A 25 525 31 HOH HOH . P 6 HOH A 26 526 34 HOH HOH . P 6 HOH A 27 527 35 HOH HOH . P 6 HOH A 28 528 36 HOH HOH . P 6 HOH A 29 529 38 HOH HOH . P 6 HOH A 30 530 44 HOH HOH . P 6 HOH A 31 531 72 HOH HOH . P 6 HOH A 32 532 73 HOH HOH . P 6 HOH A 33 533 87 HOH HOH . P 6 HOH A 34 534 88 HOH HOH . P 6 HOH A 35 535 89 HOH HOH . P 6 HOH A 36 536 90 HOH HOH . P 6 HOH A 37 537 91 HOH HOH . P 6 HOH A 38 538 92 HOH HOH . P 6 HOH A 39 539 93 HOH HOH . P 6 HOH A 40 540 94 HOH HOH . P 6 HOH A 41 541 95 HOH HOH . P 6 HOH A 42 542 96 HOH HOH . P 6 HOH A 43 543 97 HOH HOH . P 6 HOH A 44 544 98 HOH HOH . P 6 HOH A 45 545 99 HOH HOH . P 6 HOH A 46 546 100 HOH HOH . P 6 HOH A 47 547 101 HOH HOH . P 6 HOH A 48 548 102 HOH HOH . P 6 HOH A 49 549 103 HOH HOH . P 6 HOH A 50 550 104 HOH HOH . P 6 HOH A 51 551 105 HOH HOH . P 6 HOH A 52 552 108 HOH HOH . P 6 HOH A 53 553 109 HOH HOH . P 6 HOH A 54 554 110 HOH HOH . P 6 HOH A 55 555 111 HOH HOH . P 6 HOH A 56 556 112 HOH HOH . P 6 HOH A 57 557 113 HOH HOH . P 6 HOH A 58 558 114 HOH HOH . P 6 HOH A 59 559 115 HOH HOH . P 6 HOH A 60 560 117 HOH HOH . P 6 HOH A 61 561 118 HOH HOH . P 6 HOH A 62 562 119 HOH HOH . P 6 HOH A 63 563 120 HOH HOH . P 6 HOH A 64 564 121 HOH HOH . P 6 HOH A 65 565 122 HOH HOH . P 6 HOH A 66 566 123 HOH HOH . P 6 HOH A 67 567 124 HOH HOH . P 6 HOH A 68 568 126 HOH HOH . P 6 HOH A 69 569 127 HOH HOH . P 6 HOH A 70 570 128 HOH HOH . P 6 HOH A 71 571 129 HOH HOH . P 6 HOH A 72 572 130 HOH HOH . P 6 HOH A 73 573 131 HOH HOH . P 6 HOH A 74 574 132 HOH HOH . P 6 HOH A 75 575 133 HOH HOH . P 6 HOH A 76 576 134 HOH HOH . P 6 HOH A 77 577 135 HOH HOH . P 6 HOH A 78 578 136 HOH HOH . P 6 HOH A 79 579 137 HOH HOH . P 6 HOH A 80 580 138 HOH HOH . P 6 HOH A 81 581 139 HOH HOH . P 6 HOH A 82 582 142 HOH HOH . P 6 HOH A 83 583 144 HOH HOH . P 6 HOH A 84 584 146 HOH HOH . P 6 HOH A 85 585 148 HOH HOH . P 6 HOH A 86 586 149 HOH HOH . P 6 HOH A 87 587 153 HOH HOH . P 6 HOH A 88 588 157 HOH HOH . P 6 HOH A 89 589 160 HOH HOH . P 6 HOH A 90 590 161 HOH HOH . P 6 HOH A 91 591 162 HOH HOH . P 6 HOH A 92 592 163 HOH HOH . P 6 HOH A 93 593 165 HOH HOH . P 6 HOH A 94 594 166 HOH HOH . P 6 HOH A 95 595 167 HOH HOH . P 6 HOH A 96 596 174 HOH HOH . P 6 HOH A 97 597 188 HOH HOH . P 6 HOH A 98 598 197 HOH HOH . P 6 HOH A 99 599 199 HOH HOH . P 6 HOH A 100 600 201 HOH HOH . P 6 HOH A 101 601 202 HOH HOH . P 6 HOH A 102 602 203 HOH HOH . P 6 HOH A 103 603 204 HOH HOH . P 6 HOH A 104 604 205 HOH HOH . P 6 HOH A 105 605 206 HOH HOH . P 6 HOH A 106 606 207 HOH HOH . P 6 HOH A 107 607 208 HOH HOH . P 6 HOH A 108 608 209 HOH HOH . P 6 HOH A 109 609 210 HOH HOH . P 6 HOH A 110 610 211 HOH HOH . P 6 HOH A 111 611 212 HOH HOH . P 6 HOH A 112 612 213 HOH HOH . P 6 HOH A 113 613 214 HOH HOH . P 6 HOH A 114 614 215 HOH HOH . P 6 HOH A 115 615 216 HOH HOH . P 6 HOH A 116 616 217 HOH HOH . P 6 HOH A 117 617 218 HOH HOH . P 6 HOH A 118 618 219 HOH HOH . P 6 HOH A 119 619 220 HOH HOH . P 6 HOH A 120 620 221 HOH HOH . P 6 HOH A 121 621 222 HOH HOH . P 6 HOH A 122 622 223 HOH HOH . P 6 HOH A 123 623 224 HOH HOH . P 6 HOH A 124 624 225 HOH HOH . P 6 HOH A 125 625 226 HOH HOH . P 6 HOH A 126 626 227 HOH HOH . P 6 HOH A 127 627 228 HOH HOH . P 6 HOH A 128 628 229 HOH HOH . P 6 HOH A 129 629 230 HOH HOH . P 6 HOH A 130 630 231 HOH HOH . P 6 HOH A 131 631 232 HOH HOH . P 6 HOH A 132 632 233 HOH HOH . P 6 HOH A 133 633 234 HOH HOH . P 6 HOH A 134 634 235 HOH HOH . P 6 HOH A 135 635 236 HOH HOH . P 6 HOH A 136 636 237 HOH HOH . P 6 HOH A 137 637 238 HOH HOH . P 6 HOH A 138 638 239 HOH HOH . P 6 HOH A 139 639 240 HOH HOH . P 6 HOH A 140 640 241 HOH HOH . P 6 HOH A 141 641 242 HOH HOH . P 6 HOH A 142 642 244 HOH HOH . P 6 HOH A 143 643 246 HOH HOH . P 6 HOH A 144 644 247 HOH HOH . P 6 HOH A 145 645 248 HOH HOH . P 6 HOH A 146 646 250 HOH HOH . P 6 HOH A 147 647 251 HOH HOH . P 6 HOH A 148 648 254 HOH HOH . P 6 HOH A 149 649 255 HOH HOH . P 6 HOH A 150 650 256 HOH HOH . P 6 HOH A 151 651 257 HOH HOH . P 6 HOH A 152 652 258 HOH HOH . P 6 HOH A 153 653 260 HOH HOH . P 6 HOH A 154 654 261 HOH HOH . P 6 HOH A 155 655 262 HOH HOH . P 6 HOH A 156 656 263 HOH HOH . P 6 HOH A 157 657 264 HOH HOH . P 6 HOH A 158 658 265 HOH HOH . P 6 HOH A 159 659 266 HOH HOH . P 6 HOH A 160 660 267 HOH HOH . P 6 HOH A 161 661 268 HOH HOH . P 6 HOH A 162 662 269 HOH HOH . P 6 HOH A 163 663 270 HOH HOH . P 6 HOH A 164 664 271 HOH HOH . P 6 HOH A 165 665 272 HOH HOH . P 6 HOH A 166 666 273 HOH HOH . P 6 HOH A 167 667 274 HOH HOH . P 6 HOH A 168 668 275 HOH HOH . P 6 HOH A 169 669 276 HOH HOH . P 6 HOH A 170 670 277 HOH HOH . P 6 HOH A 171 671 278 HOH HOH . P 6 HOH A 172 672 279 HOH HOH . P 6 HOH A 173 673 280 HOH HOH . P 6 HOH A 174 674 281 HOH HOH . P 6 HOH A 175 675 282 HOH HOH . P 6 HOH A 176 676 284 HOH HOH . P 6 HOH A 177 677 285 HOH HOH . P 6 HOH A 178 678 286 HOH HOH . P 6 HOH A 179 679 287 HOH HOH . P 6 HOH A 180 680 288 HOH HOH . P 6 HOH A 181 681 289 HOH HOH . P 6 HOH A 182 682 290 HOH HOH . P 6 HOH A 183 683 291 HOH HOH . P 6 HOH A 184 684 292 HOH HOH . P 6 HOH A 185 685 293 HOH HOH . P 6 HOH A 186 686 294 HOH HOH . P 6 HOH A 187 687 295 HOH HOH . P 6 HOH A 188 688 296 HOH HOH . P 6 HOH A 189 689 297 HOH HOH . P 6 HOH A 190 690 298 HOH HOH . P 6 HOH A 191 691 299 HOH HOH . P 6 HOH A 192 692 300 HOH HOH . P 6 HOH A 193 693 301 HOH HOH . P 6 HOH A 194 694 302 HOH HOH . P 6 HOH A 195 695 303 HOH HOH . P 6 HOH A 196 696 304 HOH HOH . P 6 HOH A 197 697 305 HOH HOH . P 6 HOH A 198 698 306 HOH HOH . P 6 HOH A 199 699 307 HOH HOH . P 6 HOH A 200 700 310 HOH HOH . P 6 HOH A 201 701 313 HOH HOH . P 6 HOH A 202 702 314 HOH HOH . P 6 HOH A 203 703 315 HOH HOH . P 6 HOH A 204 704 317 HOH HOH . P 6 HOH A 205 705 318 HOH HOH . P 6 HOH A 206 706 320 HOH HOH . P 6 HOH A 207 707 321 HOH HOH . P 6 HOH A 208 708 322 HOH HOH . P 6 HOH A 209 709 323 HOH HOH . P 6 HOH A 210 710 325 HOH HOH . P 6 HOH A 211 711 326 HOH HOH . P 6 HOH A 212 712 327 HOH HOH . P 6 HOH A 213 713 328 HOH HOH . P 6 HOH A 214 714 329 HOH HOH . P 6 HOH A 215 715 330 HOH HOH . P 6 HOH A 216 716 331 HOH HOH . P 6 HOH A 217 717 333 HOH HOH . P 6 HOH A 218 718 334 HOH HOH . P 6 HOH A 219 719 338 HOH HOH . P 6 HOH A 220 720 339 HOH HOH . P 6 HOH A 221 721 340 HOH HOH . P 6 HOH A 222 722 341 HOH HOH . P 6 HOH A 223 723 342 HOH HOH . P 6 HOH A 224 724 343 HOH HOH . P 6 HOH A 225 725 344 HOH HOH . P 6 HOH A 226 726 346 HOH HOH . P 6 HOH A 227 727 349 HOH HOH . P 6 HOH A 228 728 350 HOH HOH . P 6 HOH A 229 729 351 HOH HOH . P 6 HOH A 230 730 352 HOH HOH . P 6 HOH A 231 731 353 HOH HOH . P 6 HOH A 232 732 354 HOH HOH . P 6 HOH A 233 733 356 HOH HOH . P 6 HOH A 234 734 357 HOH HOH . P 6 HOH A 235 735 358 HOH HOH . P 6 HOH A 236 736 359 HOH HOH . P 6 HOH A 237 737 360 HOH HOH . P 6 HOH A 238 738 361 HOH HOH . P 6 HOH A 239 739 362 HOH HOH . P 6 HOH A 240 740 363 HOH HOH . P 6 HOH A 241 741 365 HOH HOH . P 6 HOH A 242 742 366 HOH HOH . P 6 HOH A 243 743 367 HOH HOH . P 6 HOH A 244 744 368 HOH HOH . P 6 HOH A 245 745 371 HOH HOH . P 6 HOH A 246 746 372 HOH HOH . P 6 HOH A 247 747 373 HOH HOH . P 6 HOH A 248 748 374 HOH HOH . P 6 HOH A 249 749 375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 -41.869 20.527 13.467 1 9.2 ? N1 ORO 402 A 1 HETATM 2 C C2 ORO . . . C 3 -41.627 19.202 13.045 1 8.18 ? C2 ORO 402 A 1 HETATM 3 O O2 ORO . . . C 3 -41.665 18.851 11.836 1 7.02 ? O2 ORO 402 A 1 HETATM 4 N N3 ORO . . . C 3 -41.361 18.317 13.994 1 7.78 ? N3 ORO 402 A 1 HETATM 5 C C4 ORO . . . C 3 -41.332 18.617 15.31 1 7.93 ? C4 ORO 402 A 1 HETATM 6 O O4 ORO . . . C 3 -41.048 17.72 16.17 1 8.47 ? O4 ORO 402 A 1 HETATM 7 C C5 ORO . . . C 3 -41.555 19.874 15.721 1 7.87 ? C5 ORO 402 A 1 HETATM 8 C C6 ORO . . . C 3 -41.815 20.836 14.799 1 8.71 ? C6 ORO 402 A 1 HETATM 9 C C7 ORO . . . C 3 -42.181 22.208 15.269 1 9.38 ? C7 ORO 402 A 1 HETATM 10 O O71 ORO . . . C 3 -41.847 23.224 14.634 1 10.35 ? O71 ORO 402 A 1 HETATM 11 O O72 ORO . . . C 3 -42.973 22.296 16.225 1 9.72 ? O72 ORO 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #