data_4RKA
#
_model_server_result.job_id            F4DZ0cAiYshobck3x4Y0wg 
_model_server_result.datetime_utc      '2024-11-08 13:45:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4RKA 
#
_exptl.entry_id    4RKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RKA 
_cell.length_a            90.65 
_cell.length_b            90.65 
_cell.length_c            122.45 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 116 n n 
N1 C10 FMN doub 117 n n 
C2 O2 FMN doub 118 n n 
C2 N3 FMN sing 119 n n 
N3 C4 FMN sing 120 n n 
N3 HN3 FMN sing 121 n n 
C4 O4 FMN doub 122 n n 
C4 C4A FMN sing 123 n n 
C4A N5 FMN doub 124 n n 
C4A C10 FMN sing 125 n n 
N5 C5A FMN sing 126 n n 
C5A C6 FMN doub 127 n y 
C5A C9A FMN sing 128 n y 
C6 C7 FMN sing 129 n y 
C6 H6 FMN sing 130 n n 
C7 C7M FMN sing 131 n n 
C7 C8 FMN doub 132 n y 
C7M HM71 FMN sing 133 n n 
C7M HM72 FMN sing 134 n n 
C7M HM73 FMN sing 135 n n 
C8 C8M FMN sing 136 n n 
C8 C9 FMN sing 137 n y 
C8M HM81 FMN sing 138 n n 
C8M HM82 FMN sing 139 n n 
C8M HM83 FMN sing 140 n n 
C9 C9A FMN doub 141 n y 
C9 H9 FMN sing 142 n n 
C9A N10 FMN sing 143 n n 
N10 C10 FMN sing 144 n n 
N10 C1' FMN sing 145 n n 
C1' C2' FMN sing 146 n n 
C1' "H1'1" FMN sing 147 n n 
C1' "H1'2" FMN sing 148 n n 
C2' O2' FMN sing 149 n n 
C2' C3' FMN sing 150 n n 
C2' H2' FMN sing 151 n n 
O2' HO2' FMN sing 152 n n 
C3' O3' FMN sing 153 n n 
C3' C4' FMN sing 154 n n 
C3' H3' FMN sing 155 n n 
O3' HO3' FMN sing 156 n n 
C4' O4' FMN sing 157 n n 
C4' C5' FMN sing 158 n n 
C4' H4' FMN sing 159 n n 
O4' HO4' FMN sing 160 n n 
C5' O5' FMN sing 161 n n 
C5' "H5'1" FMN sing 162 n n 
C5' "H5'2" FMN sing 163 n n 
O5' P FMN sing 164 n n 
P O1P FMN doub 165 n n 
P O2P FMN sing 166 n n 
P O3P FMN sing 167 n n 
O2P HOP2 FMN sing 168 n n 
O3P HOP3 FMN sing 169 n n 
#
_atom_sites.entry_id                     4RKA 
_atom_sites.fract_transf_matrix[1][1]    0.011031 
_atom_sites.fract_transf_matrix[1][2]    0.006369 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012738 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 401 398 FMN FMN . 
C 3 ORO A 1 402 399 ORO ORO . 
D 4 SO4 A 1 403 1 SO4 SO4 . 
E 4 SO4 A 1 404 2 SO4 SO4 . 
F 4 SO4 A 1 405 3 SO4 SO4 . 
G 4 SO4 A 1 406 5 SO4 SO4 . 
H 4 SO4 A 1 407 6 SO4 SO4 . 
I 4 SO4 A 1 408 7 SO4 SO4 . 
J 5 3RY A 1 409 1 3RY 347 . 
K 6 HOH A 1 501 1 HOH HOH . 
K 6 HOH A 2 502 2 HOH HOH . 
K 6 HOH A 3 503 3 HOH HOH . 
K 6 HOH A 4 504 5 HOH HOH . 
K 6 HOH A 5 505 6 HOH HOH . 
K 6 HOH A 6 506 7 HOH HOH . 
K 6 HOH A 7 507 8 HOH HOH . 
K 6 HOH A 8 508 10 HOH HOH . 
K 6 HOH A 9 509 11 HOH HOH . 
K 6 HOH A 10 510 14 HOH HOH . 
K 6 HOH A 11 511 15 HOH HOH . 
K 6 HOH A 12 512 16 HOH HOH . 
K 6 HOH A 13 513 18 HOH HOH . 
K 6 HOH A 14 514 19 HOH HOH . 
K 6 HOH A 15 515 28 HOH HOH . 
K 6 HOH A 16 516 29 HOH HOH . 
K 6 HOH A 17 517 31 HOH HOH . 
K 6 HOH A 18 518 32 HOH HOH . 
K 6 HOH A 19 519 34 HOH HOH . 
K 6 HOH A 20 520 35 HOH HOH . 
K 6 HOH A 21 521 39 HOH HOH . 
K 6 HOH A 22 522 40 HOH HOH . 
K 6 HOH A 23 523 43 HOH HOH . 
K 6 HOH A 24 524 44 HOH HOH . 
K 6 HOH A 25 525 57 HOH HOH . 
K 6 HOH A 26 526 69 HOH HOH . 
K 6 HOH A 27 527 72 HOH HOH . 
K 6 HOH A 28 528 73 HOH HOH . 
K 6 HOH A 29 529 74 HOH HOH . 
K 6 HOH A 30 530 75 HOH HOH . 
K 6 HOH A 31 531 76 HOH HOH . 
K 6 HOH A 32 532 77 HOH HOH . 
K 6 HOH A 33 533 78 HOH HOH . 
K 6 HOH A 34 534 79 HOH HOH . 
K 6 HOH A 35 535 80 HOH HOH . 
K 6 HOH A 36 536 81 HOH HOH . 
K 6 HOH A 37 537 83 HOH HOH . 
K 6 HOH A 38 538 84 HOH HOH . 
K 6 HOH A 39 539 85 HOH HOH . 
K 6 HOH A 40 540 86 HOH HOH . 
K 6 HOH A 41 541 87 HOH HOH . 
K 6 HOH A 42 542 88 HOH HOH . 
K 6 HOH A 43 543 89 HOH HOH . 
K 6 HOH A 44 544 93 HOH HOH . 
K 6 HOH A 45 545 94 HOH HOH . 
K 6 HOH A 46 546 95 HOH HOH . 
K 6 HOH A 47 547 96 HOH HOH . 
K 6 HOH A 48 548 97 HOH HOH . 
K 6 HOH A 49 549 99 HOH HOH . 
K 6 HOH A 50 550 100 HOH HOH . 
K 6 HOH A 51 551 101 HOH HOH . 
K 6 HOH A 52 552 102 HOH HOH . 
K 6 HOH A 53 553 103 HOH HOH . 
K 6 HOH A 54 554 104 HOH HOH . 
K 6 HOH A 55 555 106 HOH HOH . 
K 6 HOH A 56 556 107 HOH HOH . 
K 6 HOH A 57 557 108 HOH HOH . 
K 6 HOH A 58 558 109 HOH HOH . 
K 6 HOH A 59 559 110 HOH HOH . 
K 6 HOH A 60 560 111 HOH HOH . 
K 6 HOH A 61 561 112 HOH HOH . 
K 6 HOH A 62 562 113 HOH HOH . 
K 6 HOH A 63 563 114 HOH HOH . 
K 6 HOH A 64 564 115 HOH HOH . 
K 6 HOH A 65 565 116 HOH HOH . 
K 6 HOH A 66 566 118 HOH HOH . 
K 6 HOH A 67 567 119 HOH HOH . 
K 6 HOH A 68 568 120 HOH HOH . 
K 6 HOH A 69 569 121 HOH HOH . 
K 6 HOH A 70 570 123 HOH HOH . 
K 6 HOH A 71 571 124 HOH HOH . 
K 6 HOH A 72 572 125 HOH HOH . 
K 6 HOH A 73 573 126 HOH HOH . 
K 6 HOH A 74 574 127 HOH HOH . 
K 6 HOH A 75 575 128 HOH HOH . 
K 6 HOH A 76 576 129 HOH HOH . 
K 6 HOH A 77 577 130 HOH HOH . 
K 6 HOH A 78 578 131 HOH HOH . 
K 6 HOH A 79 579 132 HOH HOH . 
K 6 HOH A 80 580 133 HOH HOH . 
K 6 HOH A 81 581 134 HOH HOH . 
K 6 HOH A 82 582 135 HOH HOH . 
K 6 HOH A 83 583 136 HOH HOH . 
K 6 HOH A 84 584 137 HOH HOH . 
K 6 HOH A 85 585 138 HOH HOH . 
K 6 HOH A 86 586 142 HOH HOH . 
K 6 HOH A 87 587 143 HOH HOH . 
K 6 HOH A 88 588 145 HOH HOH . 
K 6 HOH A 89 589 146 HOH HOH . 
K 6 HOH A 90 590 147 HOH HOH . 
K 6 HOH A 91 591 148 HOH HOH . 
K 6 HOH A 92 592 149 HOH HOH . 
K 6 HOH A 93 593 151 HOH HOH . 
K 6 HOH A 94 594 152 HOH HOH . 
K 6 HOH A 95 595 153 HOH HOH . 
K 6 HOH A 96 596 155 HOH HOH . 
K 6 HOH A 97 597 157 HOH HOH . 
K 6 HOH A 98 598 159 HOH HOH . 
K 6 HOH A 99 599 160 HOH HOH . 
K 6 HOH A 100 600 161 HOH HOH . 
K 6 HOH A 101 601 162 HOH HOH . 
K 6 HOH A 102 602 165 HOH HOH . 
K 6 HOH A 103 603 166 HOH HOH . 
K 6 HOH A 104 604 167 HOH HOH . 
K 6 HOH A 105 605 168 HOH HOH . 
K 6 HOH A 106 606 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . B 2 3.489 42.255 8.518 1 3.67 ? N1 FMN 401 A 1 
HETATM 2 C C2 FMN . . . B 2 3.096 42.927 9.606 1 3.76 ? C2 FMN 401 A 1 
HETATM 3 O O2 FMN . . . B 2 3.724 42.801 10.713 1 3.82 ? O2 FMN 401 A 1 
HETATM 4 N N3 FMN . . . B 2 2.054 43.756 9.554 1 3.74 ? N3 FMN 401 A 1 
HETATM 5 C C4 FMN . . . B 2 1.325 43.966 8.471 1 3.75 ? C4 FMN 401 A 1 
HETATM 6 O O4 FMN . . . B 2 0.361 44.766 8.489 1 3.76 ? O4 FMN 401 A 1 
HETATM 7 C C4A FMN . . . B 2 1.688 43.265 7.239 1 3.71 ? C4A FMN 401 A 1 
HETATM 8 N N5 FMN . . . B 2 1.024 43.452 6.067 1 3.69 ? N5 FMN 401 A 1 
HETATM 9 C C5A FMN . . . B 2 1.408 42.778 4.981 1 3.6 ? C5A FMN 401 A 1 
HETATM 10 C C6 FMN . . . B 2 0.698 42.899 3.803 1 3.6 ? C6 FMN 401 A 1 
HETATM 11 C C7 FMN . . . B 2 1.075 42.172 2.688 1 3.61 ? C7 FMN 401 A 1 
HETATM 12 C C7M FMN . . . B 2 0.292 42.35 1.424 1 3.67 ? C7M FMN 401 A 1 
HETATM 13 C C8 FMN . . . B 2 2.24 41.255 2.758 1 3.53 ? C8 FMN 401 A 1 
HETATM 14 C C8M FMN . . . B 2 2.735 40.401 1.641 1 3.47 ? C8M FMN 401 A 1 
HETATM 15 C C9 FMN . . . B 2 2.895 41.144 3.94 1 3.53 ? C9 FMN 401 A 1 
HETATM 16 C C9A FMN . . . B 2 2.536 41.85 5.052 1 3.53 ? C9A FMN 401 A 1 
HETATM 17 N N10 FMN . . . B 2 3.238 41.671 6.237 1 3.53 ? N10 FMN 401 A 1 
HETATM 18 C C10 FMN . . . B 2 2.86 42.397 7.354 1 3.65 ? C10 FMN 401 A 1 
HETATM 19 C C1' FMN . . . B 2 4.397 40.791 6.345 1 3.42 ? C1' FMN 401 A 1 
HETATM 20 C C2' FMN . . . B 2 4.093 39.351 6.646 1 3.31 ? C2' FMN 401 A 1 
HETATM 21 O O2' FMN . . . B 2 3.572 39.335 7.969 1 3.25 ? O2' FMN 401 A 1 
HETATM 22 C C3' FMN . . . B 2 5.403 38.533 6.571 1 3.25 ? C3' FMN 401 A 1 
HETATM 23 O O3' FMN . . . B 2 6.305 38.982 7.577 1 3.21 ? O3' FMN 401 A 1 
HETATM 24 C C4' FMN . . . B 2 6.206 38.598 5.281 1 3.2 ? C4' FMN 401 A 1 
HETATM 25 O O4' FMN . . . B 2 5.355 38.724 4.176 1 3.17 ? O4' FMN 401 A 1 
HETATM 26 C C5' FMN . . . B 2 7.081 37.365 5.067 1 3.21 ? C5' FMN 401 A 1 
HETATM 27 O O5' FMN . . . B 2 6.281 36.213 4.972 1 3.21 ? O5' FMN 401 A 1 
HETATM 28 P P FMN . . . B 2 5.809 35.638 3.515 1 3.25 ? P FMN 401 A 1 
HETATM 29 O O1P FMN . . . B 2 7.027 35.615 2.623 1 3.23 ? O1P FMN 401 A 1 
HETATM 30 O O2P FMN . . . B 2 4.805 36.573 2.872 1 3.26 ? O2P FMN 401 A 1 
HETATM 31 O O3P FMN . . . B 2 5.263 34.303 3.942 1 3.16 -1 O3P FMN 401 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#