data_4RKA
#
_model_server_result.job_id            F04kzqdAL7uVci4z6P6-7w 
_model_server_result.datetime_utc      '2024-11-08 13:25:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rka 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    4RKA 
#
_exptl.entry_id    4RKA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.428 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-{[5-(naphthalen-1-ylmethyl)-4-oxo-4H-1lambda~4~,3-thiazol-2-yl]amino}benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RKA 
_cell.length_a            90.65 
_cell.length_b            90.65 
_cell.length_c            122.45 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RKA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H16 N2 O3 S' 
_chem_comp.formula_weight    376.428 
_chem_comp.id                3RY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-{[5-(naphthalen-1-ylmethyl)-4-oxo-4H-1lambda~4~,3-thiazol-2-yl]amino}benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C7 3RY doub 1 n n 
O8 C7 3RY sing 2 n n 
C7 C5 3RY sing 3 n n 
C23 C24 3RY doub 4 n y 
C23 C22 3RY sing 5 n y 
C24 C25 3RY sing 6 n y 
S17 C13 3RY sing 7 n n 
S17 C16 3RY doub 8 n n 
C5 C6 3RY doub 9 n y 
C5 C4 3RY sing 10 n y 
N11 C13 3RY sing 11 n n 
N11 C4 3RY sing 12 n n 
C22 C21 3RY doub 13 n y 
C6 C1 3RY sing 14 n y 
C13 N14 3RY doub 15 n n 
C4 C3 3RY doub 16 n y 
C25 C39 3RY doub 17 n y 
C25 C26 3RY sing 18 n y 
C21 C26 3RY sing 19 n y 
C21 C19 3RY sing 20 n n 
C16 C19 3RY sing 21 n n 
C16 C15 3RY sing 22 n n 
C39 C38 3RY sing 23 n y 
N14 C15 3RY sing 24 n n 
C1 C2 3RY doub 25 n y 
C26 C36 3RY doub 26 n y 
C3 C2 3RY sing 27 n y 
C15 O18 3RY doub 28 n n 
C38 C37 3RY doub 29 n y 
C36 C37 3RY sing 30 n y 
O8 H1 3RY sing 31 n n 
C3 H2 3RY sing 32 n n 
C2 H3 3RY sing 33 n n 
C1 H4 3RY sing 34 n n 
C6 H5 3RY sing 35 n n 
N11 H6 3RY sing 36 n n 
C19 H7 3RY sing 37 n n 
C19 H8 3RY sing 38 n n 
C22 H9 3RY sing 39 n n 
C23 H10 3RY sing 40 n n 
C24 H11 3RY sing 41 n n 
C39 H12 3RY sing 42 n n 
C38 H13 3RY sing 43 n n 
C37 H14 3RY sing 44 n n 
C36 H15 3RY sing 45 n n 
S17 H16 3RY sing 46 n n 
#
_atom_sites.entry_id                     4RKA 
_atom_sites.fract_transf_matrix[1][1]    0.011031 
_atom_sites.fract_transf_matrix[1][2]    0.006369 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012738 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 401 398 FMN FMN . 
C 3 ORO A 1 402 399 ORO ORO . 
D 4 SO4 A 1 403 1 SO4 SO4 . 
E 4 SO4 A 1 404 2 SO4 SO4 . 
F 4 SO4 A 1 405 3 SO4 SO4 . 
G 4 SO4 A 1 406 5 SO4 SO4 . 
H 4 SO4 A 1 407 6 SO4 SO4 . 
I 4 SO4 A 1 408 7 SO4 SO4 . 
J 5 3RY A 1 409 1 3RY 347 . 
K 6 HOH A 1 501 1 HOH HOH . 
K 6 HOH A 2 502 2 HOH HOH . 
K 6 HOH A 3 503 3 HOH HOH . 
K 6 HOH A 4 504 5 HOH HOH . 
K 6 HOH A 5 505 6 HOH HOH . 
K 6 HOH A 6 506 7 HOH HOH . 
K 6 HOH A 7 507 8 HOH HOH . 
K 6 HOH A 8 508 10 HOH HOH . 
K 6 HOH A 9 509 11 HOH HOH . 
K 6 HOH A 10 510 14 HOH HOH . 
K 6 HOH A 11 511 15 HOH HOH . 
K 6 HOH A 12 512 16 HOH HOH . 
K 6 HOH A 13 513 18 HOH HOH . 
K 6 HOH A 14 514 19 HOH HOH . 
K 6 HOH A 15 515 28 HOH HOH . 
K 6 HOH A 16 516 29 HOH HOH . 
K 6 HOH A 17 517 31 HOH HOH . 
K 6 HOH A 18 518 32 HOH HOH . 
K 6 HOH A 19 519 34 HOH HOH . 
K 6 HOH A 20 520 35 HOH HOH . 
K 6 HOH A 21 521 39 HOH HOH . 
K 6 HOH A 22 522 40 HOH HOH . 
K 6 HOH A 23 523 43 HOH HOH . 
K 6 HOH A 24 524 44 HOH HOH . 
K 6 HOH A 25 525 57 HOH HOH . 
K 6 HOH A 26 526 69 HOH HOH . 
K 6 HOH A 27 527 72 HOH HOH . 
K 6 HOH A 28 528 73 HOH HOH . 
K 6 HOH A 29 529 74 HOH HOH . 
K 6 HOH A 30 530 75 HOH HOH . 
K 6 HOH A 31 531 76 HOH HOH . 
K 6 HOH A 32 532 77 HOH HOH . 
K 6 HOH A 33 533 78 HOH HOH . 
K 6 HOH A 34 534 79 HOH HOH . 
K 6 HOH A 35 535 80 HOH HOH . 
K 6 HOH A 36 536 81 HOH HOH . 
K 6 HOH A 37 537 83 HOH HOH . 
K 6 HOH A 38 538 84 HOH HOH . 
K 6 HOH A 39 539 85 HOH HOH . 
K 6 HOH A 40 540 86 HOH HOH . 
K 6 HOH A 41 541 87 HOH HOH . 
K 6 HOH A 42 542 88 HOH HOH . 
K 6 HOH A 43 543 89 HOH HOH . 
K 6 HOH A 44 544 93 HOH HOH . 
K 6 HOH A 45 545 94 HOH HOH . 
K 6 HOH A 46 546 95 HOH HOH . 
K 6 HOH A 47 547 96 HOH HOH . 
K 6 HOH A 48 548 97 HOH HOH . 
K 6 HOH A 49 549 99 HOH HOH . 
K 6 HOH A 50 550 100 HOH HOH . 
K 6 HOH A 51 551 101 HOH HOH . 
K 6 HOH A 52 552 102 HOH HOH . 
K 6 HOH A 53 553 103 HOH HOH . 
K 6 HOH A 54 554 104 HOH HOH . 
K 6 HOH A 55 555 106 HOH HOH . 
K 6 HOH A 56 556 107 HOH HOH . 
K 6 HOH A 57 557 108 HOH HOH . 
K 6 HOH A 58 558 109 HOH HOH . 
K 6 HOH A 59 559 110 HOH HOH . 
K 6 HOH A 60 560 111 HOH HOH . 
K 6 HOH A 61 561 112 HOH HOH . 
K 6 HOH A 62 562 113 HOH HOH . 
K 6 HOH A 63 563 114 HOH HOH . 
K 6 HOH A 64 564 115 HOH HOH . 
K 6 HOH A 65 565 116 HOH HOH . 
K 6 HOH A 66 566 118 HOH HOH . 
K 6 HOH A 67 567 119 HOH HOH . 
K 6 HOH A 68 568 120 HOH HOH . 
K 6 HOH A 69 569 121 HOH HOH . 
K 6 HOH A 70 570 123 HOH HOH . 
K 6 HOH A 71 571 124 HOH HOH . 
K 6 HOH A 72 572 125 HOH HOH . 
K 6 HOH A 73 573 126 HOH HOH . 
K 6 HOH A 74 574 127 HOH HOH . 
K 6 HOH A 75 575 128 HOH HOH . 
K 6 HOH A 76 576 129 HOH HOH . 
K 6 HOH A 77 577 130 HOH HOH . 
K 6 HOH A 78 578 131 HOH HOH . 
K 6 HOH A 79 579 132 HOH HOH . 
K 6 HOH A 80 580 133 HOH HOH . 
K 6 HOH A 81 581 134 HOH HOH . 
K 6 HOH A 82 582 135 HOH HOH . 
K 6 HOH A 83 583 136 HOH HOH . 
K 6 HOH A 84 584 137 HOH HOH . 
K 6 HOH A 85 585 138 HOH HOH . 
K 6 HOH A 86 586 142 HOH HOH . 
K 6 HOH A 87 587 143 HOH HOH . 
K 6 HOH A 88 588 145 HOH HOH . 
K 6 HOH A 89 589 146 HOH HOH . 
K 6 HOH A 90 590 147 HOH HOH . 
K 6 HOH A 91 591 148 HOH HOH . 
K 6 HOH A 92 592 149 HOH HOH . 
K 6 HOH A 93 593 151 HOH HOH . 
K 6 HOH A 94 594 152 HOH HOH . 
K 6 HOH A 95 595 153 HOH HOH . 
K 6 HOH A 96 596 155 HOH HOH . 
K 6 HOH A 97 597 157 HOH HOH . 
K 6 HOH A 98 598 159 HOH HOH . 
K 6 HOH A 99 599 160 HOH HOH . 
K 6 HOH A 100 600 161 HOH HOH . 
K 6 HOH A 101 601 162 HOH HOH . 
K 6 HOH A 102 602 165 HOH HOH . 
K 6 HOH A 103 603 166 HOH HOH . 
K 6 HOH A 104 604 167 HOH HOH . 
K 6 HOH A 105 605 168 HOH HOH . 
K 6 HOH A 106 606 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O8 3RY . . . J 5 -3.134 37.714 -5.193 1 40.45 ? O8 3RY 409 A 1 
HETATM 2 C C7 3RY . . . J 5 -2.376 38.584 -4.64 1 33.58 ? C7 3RY 409 A 1 
HETATM 3 O O1 3RY . . . J 5 -1.493 39.264 -5.221 1 34.87 ? O1 3RY 409 A 1 
HETATM 4 C C5 3RY . . . J 5 -2.527 38.874 -3.19 1 29 ? C5 3RY 409 A 1 
HETATM 5 C C4 3RY . . . J 5 -3.458 38.151 -2.487 1 25.81 ? C4 3RY 409 A 1 
HETATM 6 C C3 3RY . . . J 5 -3.598 38.45 -1.127 1 24.72 ? C3 3RY 409 A 1 
HETATM 7 C C2 3RY . . . J 5 -2.833 39.405 -0.496 1 23.33 ? C2 3RY 409 A 1 
HETATM 8 C C1 3RY . . . J 5 -1.914 40.116 -1.229 1 25.08 ? C1 3RY 409 A 1 
HETATM 9 C C6 3RY . . . J 5 -1.733 39.862 -2.583 1 25.97 ? C6 3RY 409 A 1 
HETATM 10 N N11 3RY . . . J 5 -4.261 37.195 -3.163 1 27.76 ? N11 3RY 409 A 1 
HETATM 11 C C13 3RY . . . J 5 -4.817 36.132 -2.519 1 28.57 ? C13 3RY 409 A 1 
HETATM 12 N N14 3RY . . . J 5 -4.564 35.993 -1.235 1 30.5 ? N14 3RY 409 A 1 
HETATM 13 C C15 3RY . . . J 5 -5.138 34.917 -0.754 1 33.2 ? C15 3RY 409 A 1 
HETATM 14 S S17 3RY . . . J 5 -5.796 34.88 -3.194 1 33.33 ? S17 3RY 409 A 1 
HETATM 15 O O18 3RY . . . J 5 -5.024 34.581 0.483 1 40.02 ? O18 3RY 409 A 1 
HETATM 16 C C16 3RY . . . J 5 -5.929 34.1 -1.626 1 34.8 ? C16 3RY 409 A 1 
HETATM 17 C C19 3RY . . . J 5 -6.488 32.848 -1.042 1 35.98 ? C19 3RY 409 A 1 
HETATM 18 C C21 3RY . . . J 5 -7.44 32.057 -1.775 1 40.57 ? C21 3RY 409 A 1 
HETATM 19 C C22 3RY . . . J 5 -7.333 31.868 -3.145 1 47.58 ? C22 3RY 409 A 1 
HETATM 20 C C23 3RY . . . J 5 -8.342 31.207 -3.863 1 52.82 ? C23 3RY 409 A 1 
HETATM 21 C C24 3RY . . . J 5 -9.507 30.804 -3.21 1 49.89 ? C24 3RY 409 A 1 
HETATM 22 C C25 3RY . . . J 5 -9.637 31.06 -1.852 1 46.74 ? C25 3RY 409 A 1 
HETATM 23 C C26 3RY . . . J 5 -8.613 31.71 -1.133 1 43.74 ? C26 3RY 409 A 1 
HETATM 24 C C39 3RY . . . J 5 -10.812 30.661 -1.24 1 45.61 ? C39 3RY 409 A 1 
HETATM 25 C C38 3RY . . . J 5 -10.976 30.895 0.114 1 46.65 ? C38 3RY 409 A 1 
HETATM 26 C C37 3RY . . . J 5 -9.964 31.536 0.831 1 48.27 ? C37 3RY 409 A 1 
HETATM 27 C C36 3RY . . . J 5 -8.768 31.94 0.229 1 45.56 ? C36 3RY 409 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#