data_4RKJ
#
_model_server_result.job_id            lif-ewRmd4a8-2sxDN7KsA 
_model_server_result.datetime_utc      '2024-11-05 01:24:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rkj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    4RKJ 
#
_exptl.entry_id    4RKJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RKJ 
_cell.length_a            61.415 
_cell.length_b            91.114 
_cell.length_c            50.553 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RKJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A O TYR 30 A TYR 14 1_555 C K K . A K 301 1_555 J ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc2 C K K . A K 301 1_555 B OH TYR 134 B TYR 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc3 C K K . A K 301 1_555 H O HOH . B HOH 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc4 C K K . A K 301 1_555 H O HOH . B HOH 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.263 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4RKJ 
_atom_sites.fract_transf_matrix[1][1]    0.016283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019781 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K A 1 301 301 K K . 
D 4 GOL A 1 302 304 GOL GOL . 
E 4 GOL B 1 301 302 GOL GOL . 
F 4 GOL B 1 302 303 GOL GOL . 
G 5 HOH A 1 401 3 HOH HOH . 
G 5 HOH A 2 402 5 HOH HOH . 
G 5 HOH A 3 403 9 HOH HOH . 
G 5 HOH A 4 404 13 HOH HOH . 
G 5 HOH A 5 405 17 HOH HOH . 
G 5 HOH A 6 406 19 HOH HOH . 
G 5 HOH A 7 407 27 HOH HOH . 
G 5 HOH A 8 408 35 HOH HOH . 
G 5 HOH A 9 409 42 HOH HOH . 
G 5 HOH A 10 410 53 HOH HOH . 
G 5 HOH A 11 411 73 HOH HOH . 
G 5 HOH A 12 412 77 HOH HOH . 
G 5 HOH A 13 413 80 HOH HOH . 
G 5 HOH A 14 414 82 HOH HOH . 
G 5 HOH A 15 415 86 HOH HOH . 
G 5 HOH A 16 416 92 HOH HOH . 
G 5 HOH A 17 417 103 HOH HOH . 
G 5 HOH A 18 418 112 HOH HOH . 
G 5 HOH A 19 419 123 HOH HOH . 
G 5 HOH A 20 420 161 HOH HOH . 
G 5 HOH A 21 421 162 HOH HOH . 
G 5 HOH A 22 422 166 HOH HOH . 
G 5 HOH A 23 423 169 HOH HOH . 
G 5 HOH A 24 424 175 HOH HOH . 
G 5 HOH A 25 425 181 HOH HOH . 
G 5 HOH A 26 426 185 HOH HOH . 
G 5 HOH A 27 427 186 HOH HOH . 
G 5 HOH A 28 428 201 HOH HOH . 
H 5 HOH B 1 401 1 HOH HOH . 
H 5 HOH B 2 402 2 HOH HOH . 
H 5 HOH B 3 403 4 HOH HOH . 
H 5 HOH B 4 404 6 HOH HOH . 
H 5 HOH B 5 405 7 HOH HOH . 
H 5 HOH B 6 406 8 HOH HOH . 
H 5 HOH B 7 407 10 HOH HOH . 
H 5 HOH B 8 408 11 HOH HOH . 
H 5 HOH B 9 409 12 HOH HOH . 
H 5 HOH B 10 410 14 HOH HOH . 
H 5 HOH B 11 411 15 HOH HOH . 
H 5 HOH B 12 412 16 HOH HOH . 
H 5 HOH B 13 413 18 HOH HOH . 
H 5 HOH B 14 414 20 HOH HOH . 
H 5 HOH B 15 415 21 HOH HOH . 
H 5 HOH B 16 416 22 HOH HOH . 
H 5 HOH B 17 417 23 HOH HOH . 
H 5 HOH B 18 418 24 HOH HOH . 
H 5 HOH B 19 419 25 HOH HOH . 
H 5 HOH B 20 420 26 HOH HOH . 
H 5 HOH B 21 421 28 HOH HOH . 
H 5 HOH B 22 422 29 HOH HOH . 
H 5 HOH B 23 423 30 HOH HOH . 
H 5 HOH B 24 424 31 HOH HOH . 
H 5 HOH B 25 425 32 HOH HOH . 
H 5 HOH B 26 426 33 HOH HOH . 
H 5 HOH B 27 427 34 HOH HOH . 
H 5 HOH B 28 428 36 HOH HOH . 
H 5 HOH B 29 429 37 HOH HOH . 
H 5 HOH B 30 430 38 HOH HOH . 
H 5 HOH B 31 431 39 HOH HOH . 
H 5 HOH B 32 432 40 HOH HOH . 
H 5 HOH B 33 433 41 HOH HOH . 
H 5 HOH B 34 434 43 HOH HOH . 
H 5 HOH B 35 435 44 HOH HOH . 
H 5 HOH B 36 436 45 HOH HOH . 
H 5 HOH B 37 437 46 HOH HOH . 
H 5 HOH B 38 438 47 HOH HOH . 
H 5 HOH B 39 439 48 HOH HOH . 
H 5 HOH B 40 440 49 HOH HOH . 
H 5 HOH B 41 441 50 HOH HOH . 
H 5 HOH B 42 442 51 HOH HOH . 
H 5 HOH B 43 443 52 HOH HOH . 
H 5 HOH B 44 444 54 HOH HOH . 
H 5 HOH B 45 445 55 HOH HOH . 
H 5 HOH B 46 446 56 HOH HOH . 
H 5 HOH B 47 447 57 HOH HOH . 
H 5 HOH B 48 448 58 HOH HOH . 
H 5 HOH B 49 449 59 HOH HOH . 
H 5 HOH B 50 450 60 HOH HOH . 
H 5 HOH B 51 451 61 HOH HOH . 
H 5 HOH B 52 452 62 HOH HOH . 
H 5 HOH B 53 453 63 HOH HOH . 
H 5 HOH B 54 454 64 HOH HOH . 
H 5 HOH B 55 455 65 HOH HOH . 
H 5 HOH B 56 456 66 HOH HOH . 
H 5 HOH B 57 457 67 HOH HOH . 
H 5 HOH B 58 458 68 HOH HOH . 
H 5 HOH B 59 459 69 HOH HOH . 
H 5 HOH B 60 460 70 HOH HOH . 
H 5 HOH B 61 461 71 HOH HOH . 
H 5 HOH B 62 462 72 HOH HOH . 
H 5 HOH B 63 463 74 HOH HOH . 
H 5 HOH B 64 464 75 HOH HOH . 
H 5 HOH B 65 465 76 HOH HOH . 
H 5 HOH B 66 466 78 HOH HOH . 
H 5 HOH B 67 467 79 HOH HOH . 
H 5 HOH B 68 468 81 HOH HOH . 
H 5 HOH B 69 469 83 HOH HOH . 
H 5 HOH B 70 470 84 HOH HOH . 
H 5 HOH B 71 471 85 HOH HOH . 
H 5 HOH B 72 472 87 HOH HOH . 
H 5 HOH B 73 473 88 HOH HOH . 
H 5 HOH B 74 474 89 HOH HOH . 
H 5 HOH B 75 475 90 HOH HOH . 
H 5 HOH B 76 476 91 HOH HOH . 
H 5 HOH B 77 477 93 HOH HOH . 
H 5 HOH B 78 478 94 HOH HOH . 
H 5 HOH B 79 479 95 HOH HOH . 
H 5 HOH B 80 480 96 HOH HOH . 
H 5 HOH B 81 481 97 HOH HOH . 
H 5 HOH B 82 482 98 HOH HOH . 
H 5 HOH B 83 483 99 HOH HOH . 
H 5 HOH B 84 484 100 HOH HOH . 
H 5 HOH B 85 485 101 HOH HOH . 
H 5 HOH B 86 486 102 HOH HOH . 
H 5 HOH B 87 487 104 HOH HOH . 
H 5 HOH B 88 488 105 HOH HOH . 
H 5 HOH B 89 489 106 HOH HOH . 
H 5 HOH B 90 490 107 HOH HOH . 
H 5 HOH B 91 491 108 HOH HOH . 
H 5 HOH B 92 492 109 HOH HOH . 
H 5 HOH B 93 493 110 HOH HOH . 
H 5 HOH B 94 494 111 HOH HOH . 
H 5 HOH B 95 495 113 HOH HOH . 
H 5 HOH B 96 496 114 HOH HOH . 
H 5 HOH B 97 497 115 HOH HOH . 
H 5 HOH B 98 498 116 HOH HOH . 
H 5 HOH B 99 499 117 HOH HOH . 
H 5 HOH B 100 500 118 HOH HOH . 
H 5 HOH B 101 501 119 HOH HOH . 
H 5 HOH B 102 502 120 HOH HOH . 
H 5 HOH B 103 503 121 HOH HOH . 
H 5 HOH B 104 504 122 HOH HOH . 
H 5 HOH B 105 505 124 HOH HOH . 
H 5 HOH B 106 506 125 HOH HOH . 
H 5 HOH B 107 507 126 HOH HOH . 
H 5 HOH B 108 508 127 HOH HOH . 
H 5 HOH B 109 509 128 HOH HOH . 
H 5 HOH B 110 510 129 HOH HOH . 
H 5 HOH B 111 511 130 HOH HOH . 
H 5 HOH B 112 512 131 HOH HOH . 
H 5 HOH B 113 513 132 HOH HOH . 
H 5 HOH B 114 514 133 HOH HOH . 
H 5 HOH B 115 515 134 HOH HOH . 
H 5 HOH B 116 516 135 HOH HOH . 
H 5 HOH B 117 517 136 HOH HOH . 
H 5 HOH B 118 518 137 HOH HOH . 
H 5 HOH B 119 519 138 HOH HOH . 
H 5 HOH B 120 520 139 HOH HOH . 
H 5 HOH B 121 521 140 HOH HOH . 
H 5 HOH B 122 522 141 HOH HOH . 
H 5 HOH B 123 523 142 HOH HOH . 
H 5 HOH B 124 524 143 HOH HOH . 
H 5 HOH B 125 525 144 HOH HOH . 
H 5 HOH B 126 526 145 HOH HOH . 
H 5 HOH B 127 527 146 HOH HOH . 
H 5 HOH B 128 528 147 HOH HOH . 
H 5 HOH B 129 529 148 HOH HOH . 
H 5 HOH B 130 530 149 HOH HOH . 
H 5 HOH B 131 531 150 HOH HOH . 
H 5 HOH B 132 532 151 HOH HOH . 
H 5 HOH B 133 533 152 HOH HOH . 
H 5 HOH B 134 534 153 HOH HOH . 
H 5 HOH B 135 535 154 HOH HOH . 
H 5 HOH B 136 536 155 HOH HOH . 
H 5 HOH B 137 537 156 HOH HOH . 
H 5 HOH B 138 538 157 HOH HOH . 
H 5 HOH B 139 539 158 HOH HOH . 
H 5 HOH B 140 540 159 HOH HOH . 
H 5 HOH B 141 541 160 HOH HOH . 
H 5 HOH B 142 542 163 HOH HOH . 
H 5 HOH B 143 543 164 HOH HOH . 
H 5 HOH B 144 544 165 HOH HOH . 
H 5 HOH B 145 545 167 HOH HOH . 
H 5 HOH B 146 546 168 HOH HOH . 
H 5 HOH B 147 547 170 HOH HOH . 
H 5 HOH B 148 548 171 HOH HOH . 
H 5 HOH B 149 549 172 HOH HOH . 
H 5 HOH B 150 550 173 HOH HOH . 
H 5 HOH B 151 551 174 HOH HOH . 
H 5 HOH B 152 552 176 HOH HOH . 
H 5 HOH B 153 553 177 HOH HOH . 
H 5 HOH B 154 554 178 HOH HOH . 
H 5 HOH B 155 555 179 HOH HOH . 
H 5 HOH B 156 556 180 HOH HOH . 
H 5 HOH B 157 557 182 HOH HOH . 
H 5 HOH B 158 558 183 HOH HOH . 
H 5 HOH B 159 559 184 HOH HOH . 
H 5 HOH B 160 560 187 HOH HOH . 
H 5 HOH B 161 561 188 HOH HOH . 
H 5 HOH B 162 562 189 HOH HOH . 
H 5 HOH B 163 563 190 HOH HOH . 
H 5 HOH B 164 564 191 HOH HOH . 
H 5 HOH B 165 565 192 HOH HOH . 
H 5 HOH B 166 566 193 HOH HOH . 
H 5 HOH B 167 567 194 HOH HOH . 
H 5 HOH B 168 568 195 HOH HOH . 
H 5 HOH B 169 569 196 HOH HOH . 
H 5 HOH B 170 570 197 HOH HOH . 
H 5 HOH B 171 571 198 HOH HOH . 
H 5 HOH B 172 572 199 HOH HOH . 
H 5 HOH B 173 573 200 HOH HOH . 
H 5 HOH B 174 574 202 HOH HOH . 
H 5 HOH B 175 575 203 HOH HOH . 
H 5 HOH B 176 576 204 HOH HOH . 
H 5 HOH B 177 577 205 HOH HOH . 
H 5 HOH B 178 578 206 HOH HOH . 
H 5 HOH B 179 579 207 HOH HOH . 
H 5 HOH B 180 580 208 HOH HOH . 
H 5 HOH B 181 581 209 HOH HOH . 
H 5 HOH B 182 582 210 HOH HOH . 
H 5 HOH B 183 583 211 HOH HOH . 
H 5 HOH B 184 584 212 HOH HOH . 
H 5 HOH B 185 585 213 HOH HOH . 
H 5 HOH B 186 586 214 HOH HOH . 
H 5 HOH B 187 587 215 HOH HOH . 
H 5 HOH B 188 588 216 HOH HOH . 
H 5 HOH B 189 589 217 HOH HOH . 
H 5 HOH B 190 590 218 HOH HOH . 
H 5 HOH B 191 591 219 HOH HOH . 
H 5 HOH B 192 592 220 HOH HOH . 
H 5 HOH B 193 593 221 HOH HOH . 
H 5 HOH B 194 594 222 HOH HOH . 
H 5 HOH B 195 595 223 HOH HOH . 
H 5 HOH B 196 596 224 HOH HOH . 
H 5 HOH B 197 597 225 HOH HOH . 
H 5 HOH B 198 598 226 HOH HOH . 
H 5 HOH B 199 599 227 HOH HOH . 
H 5 HOH B 200 600 228 HOH HOH . 
H 5 HOH B 201 601 229 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -24.96 15.023 -23.206 1 53.58 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . E 4 -25.942 14.655 -24.196 1 58.09 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . E 4 -24.199 13.81 -22.653 1 46.95 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . E 4 -22.79 14.094 -22.631 1 45.37 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . E 4 -24.476 12.553 -23.486 1 44.67 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . E 4 -23.363 11.65 -23.57 1 47.61 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#