data_4RKK # _model_server_result.job_id wHoC0ej-OdAHLCizNoyo5g _model_server_result.datetime_utc '2025-02-28 11:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 4RKK # _exptl.entry_id 4RKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RKK _cell.length_a 78.706 _cell.length_b 78.706 _cell.length_c 321.124 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 2 6 5 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 3 2 1 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 3 3 2 GLC GLC C1 O1 . O4 HO4 . sing 8 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing 9 ? 4 3 2 GLC GLC C1 O1 . O4 HO4 . sing 10 ? 4 4 3 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 B 1 GLC B 302 GLC 2 n C GLC 2 B 2 GLC B 303 GLC 2 n C GLC 3 B 3 GLC B 304 GLC 2 n C GLC 4 B 4 GLC B 305 GLC 2 n C GLC 5 B 5 GLC B 306 GLC 2 n C GLC 6 B 6 GLC B 307 GLC 3 n D GLC 1 D 1 GLC E 325 GLC 3 n D GLC 2 D 2 GLC E 326 GLC 3 n D GLC 3 D 3 GLC E 327 GLC 2 n E GLC 1 E 1 GLC H 350 GLC 2 n E GLC 2 E 2 GLC H 351 GLC 2 n E GLC 3 E 3 GLC H 352 GLC 2 n E GLC 4 E 4 GLC H 353 GLC 2 n E GLC 5 E 5 GLC H 354 GLC 2 n E GLC 6 E 6 GLC H 355 GLC 2 n F GLC 1 F 1 GLC D 302 GLC 2 n F GLC 2 F 2 GLC D 303 GLC 2 n F GLC 3 F 3 GLC D 304 GLC 2 n F GLC 4 F 4 GLC D 305 GLC 2 n F GLC 5 F 5 GLC D 306 GLC 2 n F GLC 6 F 6 GLC D 307 GLC 3 n G GLC 1 G 1 GLC F 325 GLC 3 n G GLC 2 G 2 GLC F 326 GLC 3 n G GLC 3 G 3 GLC F 327 GLC 4 n H GLC 1 H 1 GLC G 352 GLC 4 n H GLC 2 H 2 GLC G 353 GLC 4 n H GLC 3 H 3 GLC G 354 GLC 4 n H GLC 4 H 4 GLC G 355 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GLC . B GLC 1 1_555 C C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 C O4 GLC . B GLC 2 1_555 C C1 GLC . B GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 C O4 GLC . B GLC 3 1_555 C C1 GLC . B GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 C O4 GLC . B GLC 4 1_555 C C1 GLC . B GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 C O4 GLC . B GLC 5 1_555 C C1 GLC . B GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 E O4 GLC . E GLC 4 1_555 E C1 GLC . E GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 E O4 GLC . E GLC 5 1_555 E C1 GLC . E GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale13 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 F O4 GLC . F GLC 3 1_555 F C1 GLC . F GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 F O4 GLC . F GLC 4 1_555 F C1 GLC . F GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale17 F O4 GLC . F GLC 5 1_555 F C1 GLC . F GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale18 G O4 GLC . G GLC 1 1_555 G C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale19 G O4 GLC . G GLC 2 1_555 G C1 GLC . G GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale20 H O4 GLC . H GLC 1 1_555 H C1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale21 H O4 GLC . H GLC 2 1_555 H C1 GLC . H GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale22 H O4 GLC . H GLC 3 1_555 H C1 GLC . H GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 284 n n P O2 PO4 sing 285 n n P O3 PO4 sing 286 n n P O4 PO4 sing 287 n n # _atom_sites.entry_id 4RKK _atom_sites.fract_transf_matrix[1][1] 0.012706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 PO4 A 1 401 1 PO4 PO4 . J 6 GLC A 1 417 400 GLC GLC . K 5 PO4 C 1 401 1 PO4 PO4 . L 6 GLC C 1 415 400 GLC GLC . M 7 HOH A 1 501 1 HOH HOH . M 7 HOH A 2 502 2 HOH HOH . M 7 HOH A 3 503 3 HOH HOH . M 7 HOH A 4 504 4 HOH HOH . M 7 HOH A 5 505 6 HOH HOH . M 7 HOH A 6 506 7 HOH HOH . M 7 HOH A 7 507 8 HOH HOH . M 7 HOH A 8 508 13 HOH HOH . M 7 HOH A 9 509 14 HOH HOH . M 7 HOH A 10 510 16 HOH HOH . M 7 HOH A 11 511 17 HOH HOH . M 7 HOH A 12 512 19 HOH HOH . M 7 HOH A 13 513 21 HOH HOH . M 7 HOH A 14 514 22 HOH HOH . M 7 HOH A 15 515 24 HOH HOH . M 7 HOH A 16 516 27 HOH HOH . M 7 HOH A 17 517 29 HOH HOH . M 7 HOH A 18 518 30 HOH HOH . M 7 HOH A 19 519 34 HOH HOH . M 7 HOH A 20 520 35 HOH HOH . M 7 HOH A 21 521 38 HOH HOH . M 7 HOH A 22 522 40 HOH HOH . M 7 HOH A 23 523 41 HOH HOH . M 7 HOH A 24 524 42 HOH HOH . M 7 HOH A 25 525 45 HOH HOH . M 7 HOH A 26 526 48 HOH HOH . M 7 HOH A 27 527 49 HOH HOH . M 7 HOH A 28 528 53 HOH HOH . M 7 HOH A 29 529 54 HOH HOH . M 7 HOH A 30 530 55 HOH HOH . M 7 HOH A 31 531 61 HOH HOH . M 7 HOH A 32 532 62 HOH HOH . M 7 HOH A 33 533 68 HOH HOH . M 7 HOH A 34 534 69 HOH HOH . M 7 HOH A 35 535 71 HOH HOH . M 7 HOH A 36 536 72 HOH HOH . M 7 HOH A 37 537 75 HOH HOH . M 7 HOH A 38 538 78 HOH HOH . M 7 HOH A 39 539 80 HOH HOH . M 7 HOH A 40 540 81 HOH HOH . M 7 HOH A 41 541 83 HOH HOH . M 7 HOH A 42 542 84 HOH HOH . M 7 HOH A 43 543 89 HOH HOH . M 7 HOH A 44 544 95 HOH HOH . M 7 HOH A 45 545 99 HOH HOH . M 7 HOH A 46 546 100 HOH HOH . M 7 HOH A 47 547 101 HOH HOH . M 7 HOH A 48 548 102 HOH HOH . M 7 HOH A 49 549 103 HOH HOH . M 7 HOH A 50 550 104 HOH HOH . M 7 HOH A 51 551 105 HOH HOH . M 7 HOH A 52 552 106 HOH HOH . M 7 HOH A 53 553 109 HOH HOH . M 7 HOH A 54 554 110 HOH HOH . M 7 HOH A 55 555 112 HOH HOH . M 7 HOH A 56 556 113 HOH HOH . M 7 HOH A 57 557 114 HOH HOH . M 7 HOH A 58 558 115 HOH HOH . M 7 HOH A 59 559 117 HOH HOH . M 7 HOH A 60 560 119 HOH HOH . M 7 HOH A 61 561 121 HOH HOH . M 7 HOH A 62 562 123 HOH HOH . M 7 HOH A 63 563 126 HOH HOH . M 7 HOH A 64 564 127 HOH HOH . M 7 HOH A 65 565 128 HOH HOH . M 7 HOH A 66 566 129 HOH HOH . M 7 HOH A 67 567 130 HOH HOH . M 7 HOH A 68 568 131 HOH HOH . M 7 HOH A 69 569 132 HOH HOH . M 7 HOH A 70 570 137 HOH HOH . M 7 HOH A 71 571 138 HOH HOH . M 7 HOH A 72 572 139 HOH HOH . M 7 HOH A 73 573 140 HOH HOH . M 7 HOH A 74 574 141 HOH HOH . N 7 HOH C 1 501 5 HOH HOH . N 7 HOH C 2 502 9 HOH HOH . N 7 HOH C 3 503 10 HOH HOH . N 7 HOH C 4 504 11 HOH HOH . N 7 HOH C 5 505 12 HOH HOH . N 7 HOH C 6 506 15 HOH HOH . N 7 HOH C 7 507 18 HOH HOH . N 7 HOH C 8 508 20 HOH HOH . N 7 HOH C 9 509 23 HOH HOH . N 7 HOH C 10 510 25 HOH HOH . N 7 HOH C 11 511 26 HOH HOH . N 7 HOH C 12 512 28 HOH HOH . N 7 HOH C 13 513 31 HOH HOH . N 7 HOH C 14 514 32 HOH HOH . N 7 HOH C 15 515 33 HOH HOH . N 7 HOH C 16 516 36 HOH HOH . N 7 HOH C 17 517 37 HOH HOH . N 7 HOH C 18 518 39 HOH HOH . N 7 HOH C 19 519 43 HOH HOH . N 7 HOH C 20 520 44 HOH HOH . N 7 HOH C 21 521 46 HOH HOH . N 7 HOH C 22 522 47 HOH HOH . N 7 HOH C 23 523 50 HOH HOH . N 7 HOH C 24 524 51 HOH HOH . N 7 HOH C 25 525 52 HOH HOH . N 7 HOH C 26 526 56 HOH HOH . N 7 HOH C 27 527 57 HOH HOH . N 7 HOH C 28 528 58 HOH HOH . N 7 HOH C 29 529 59 HOH HOH . N 7 HOH C 30 530 60 HOH HOH . N 7 HOH C 31 531 63 HOH HOH . N 7 HOH C 32 532 64 HOH HOH . N 7 HOH C 33 533 65 HOH HOH . N 7 HOH C 34 534 66 HOH HOH . N 7 HOH C 35 535 67 HOH HOH . N 7 HOH C 36 536 70 HOH HOH . N 7 HOH C 37 537 73 HOH HOH . N 7 HOH C 38 538 74 HOH HOH . N 7 HOH C 39 539 76 HOH HOH . N 7 HOH C 40 540 77 HOH HOH . N 7 HOH C 41 541 79 HOH HOH . N 7 HOH C 42 542 82 HOH HOH . N 7 HOH C 43 543 85 HOH HOH . N 7 HOH C 44 544 86 HOH HOH . N 7 HOH C 45 545 87 HOH HOH . N 7 HOH C 46 546 88 HOH HOH . N 7 HOH C 47 547 90 HOH HOH . N 7 HOH C 48 548 91 HOH HOH . N 7 HOH C 49 549 92 HOH HOH . N 7 HOH C 50 550 93 HOH HOH . N 7 HOH C 51 551 94 HOH HOH . N 7 HOH C 52 552 96 HOH HOH . N 7 HOH C 53 553 97 HOH HOH . N 7 HOH C 54 554 98 HOH HOH . N 7 HOH C 55 555 107 HOH HOH . N 7 HOH C 56 556 108 HOH HOH . N 7 HOH C 57 557 111 HOH HOH . N 7 HOH C 58 558 116 HOH HOH . N 7 HOH C 59 559 118 HOH HOH . N 7 HOH C 60 560 120 HOH HOH . N 7 HOH C 61 561 122 HOH HOH . N 7 HOH C 62 562 124 HOH HOH . N 7 HOH C 63 563 125 HOH HOH . N 7 HOH C 64 564 133 HOH HOH . N 7 HOH C 65 565 134 HOH HOH . N 7 HOH C 66 566 135 HOH HOH . N 7 HOH C 67 567 136 HOH HOH . N 7 HOH C 68 568 142 HOH HOH . N 7 HOH C 69 569 143 HOH HOH . N 7 HOH C 70 570 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 5 52.844 70.122 129.949 1 33.63 ? P PO4 401 A 1 HETATM 2 O O1 PO4 . . . I 5 51.734 70.382 128.965 1 33.47 ? O1 PO4 401 A 1 HETATM 3 O O2 PO4 . . . I 5 54.145 69.956 129.211 1 33.79 ? O2 PO4 401 A 1 HETATM 4 O O3 PO4 . . . I 5 52.558 68.843 130.703 1 32.89 ? O3 PO4 401 A 1 HETATM 5 O O4 PO4 . . . I 5 52.933 71.292 130.895 1 32 ? O4 PO4 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #