data_4RKO # _model_server_result.job_id OEXVqUHmPUoGznzzuQPcPQ _model_server_result.datetime_utc '2024-12-27 00:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 4RKO # _exptl.entry_id 4RKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.43 _cell.angle_gamma 90 _cell.entry_id 4RKO _cell.length_a 44.593 _cell.length_b 73.31 _cell.length_c 48.706 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 B CYS 42 1_555 A SG CYS 44 B CYS 58 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 28 B CYS 42 1_555 A SG CYS 44 B CYS 58 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 119 B CYS 122 1_555 B SG CYS 15 A CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 173 B CYS 168 1_555 A SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 A SG CYS 201 B CYS 191 1_555 A SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? covale ? covale1 A NE2 HIS 43 B HIS 57 1_555 C C3 0G6 . B 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 A ND2 ASN 53 B ASN 60 1_555 H C1 NAG . B NAG 306 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 A OG1 THR 205 B THR 195 1_555 C C2 0G6 . B 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? metalc ? metalc1 A O ARG 233 B ARG 221 1_555 G NA NA . B NA 305 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A O LYS 236 B LYS 224 1_555 G NA NA . B NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 G NA NA . B NA 305 1_555 I O HOH . B HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc4 G NA NA . B NA 305 1_555 I O HOH . B HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 G NA NA . B NA 305 1_555 I O HOH . B HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 G NA NA . B NA 305 1_555 I O HOH . B HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RKO _atom_sites.fract_transf_matrix[1][1] 0.022425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0G6 B 1 301 301 0G6 0G6 . D 4 MES B 1 302 302 MES MES . E 5 GOL B 1 303 303 GOL GOL . F 5 GOL B 1 304 304 GOL GOL . G 6 NA B 1 305 401 NA NA . H 7 NAG B 1 306 701 NAG NAG . I 8 HOH B 1 401 1 HOH HOH . I 8 HOH B 2 402 2 HOH HOH . I 8 HOH B 3 403 3 HOH HOH . I 8 HOH B 4 404 4 HOH HOH . I 8 HOH B 5 405 5 HOH HOH . I 8 HOH B 6 406 6 HOH HOH . I 8 HOH B 7 407 7 HOH HOH . I 8 HOH B 8 408 8 HOH HOH . I 8 HOH B 9 409 9 HOH HOH . I 8 HOH B 10 410 10 HOH HOH . I 8 HOH B 11 411 11 HOH HOH . I 8 HOH B 12 412 12 HOH HOH . I 8 HOH B 13 413 13 HOH HOH . I 8 HOH B 14 414 14 HOH HOH . I 8 HOH B 15 415 15 HOH HOH . I 8 HOH B 16 416 16 HOH HOH . I 8 HOH B 17 417 17 HOH HOH . I 8 HOH B 18 418 18 HOH HOH . I 8 HOH B 19 419 19 HOH HOH . I 8 HOH B 20 420 22 HOH HOH . I 8 HOH B 21 421 23 HOH HOH . I 8 HOH B 22 422 24 HOH HOH . I 8 HOH B 23 423 25 HOH HOH . I 8 HOH B 24 424 27 HOH HOH . I 8 HOH B 25 425 28 HOH HOH . I 8 HOH B 26 426 29 HOH HOH . I 8 HOH B 27 427 30 HOH HOH . I 8 HOH B 28 428 31 HOH HOH . I 8 HOH B 29 429 33 HOH HOH . I 8 HOH B 30 430 35 HOH HOH . I 8 HOH B 31 431 36 HOH HOH . I 8 HOH B 32 432 37 HOH HOH . I 8 HOH B 33 433 39 HOH HOH . I 8 HOH B 34 434 40 HOH HOH . I 8 HOH B 35 435 41 HOH HOH . I 8 HOH B 36 436 42 HOH HOH . I 8 HOH B 37 437 43 HOH HOH . I 8 HOH B 38 438 46 HOH HOH . I 8 HOH B 39 439 47 HOH HOH . I 8 HOH B 40 440 48 HOH HOH . I 8 HOH B 41 441 51 HOH HOH . I 8 HOH B 42 442 52 HOH HOH . I 8 HOH B 43 443 54 HOH HOH . I 8 HOH B 44 444 55 HOH HOH . I 8 HOH B 45 445 56 HOH HOH . I 8 HOH B 46 446 57 HOH HOH . I 8 HOH B 47 447 58 HOH HOH . I 8 HOH B 48 448 59 HOH HOH . I 8 HOH B 49 449 60 HOH HOH . I 8 HOH B 50 450 61 HOH HOH . I 8 HOH B 51 451 62 HOH HOH . I 8 HOH B 52 452 63 HOH HOH . I 8 HOH B 53 453 64 HOH HOH . I 8 HOH B 54 454 65 HOH HOH . I 8 HOH B 55 455 66 HOH HOH . I 8 HOH B 56 456 67 HOH HOH . I 8 HOH B 57 457 69 HOH HOH . I 8 HOH B 58 458 70 HOH HOH . I 8 HOH B 59 459 71 HOH HOH . I 8 HOH B 60 460 72 HOH HOH . I 8 HOH B 61 461 73 HOH HOH . I 8 HOH B 62 462 74 HOH HOH . I 8 HOH B 63 463 75 HOH HOH . I 8 HOH B 64 464 76 HOH HOH . I 8 HOH B 65 465 77 HOH HOH . I 8 HOH B 66 466 78 HOH HOH . I 8 HOH B 67 467 79 HOH HOH . I 8 HOH B 68 468 80 HOH HOH . I 8 HOH B 69 469 81 HOH HOH . I 8 HOH B 70 470 84 HOH HOH . I 8 HOH B 71 471 85 HOH HOH . I 8 HOH B 72 472 86 HOH HOH . I 8 HOH B 73 473 87 HOH HOH . I 8 HOH B 74 474 88 HOH HOH . I 8 HOH B 75 475 89 HOH HOH . I 8 HOH B 76 476 90 HOH HOH . I 8 HOH B 77 477 91 HOH HOH . I 8 HOH B 78 478 92 HOH HOH . I 8 HOH B 79 479 93 HOH HOH . I 8 HOH B 80 480 94 HOH HOH . I 8 HOH B 81 481 95 HOH HOH . I 8 HOH B 82 482 96 HOH HOH . I 8 HOH B 83 483 97 HOH HOH . I 8 HOH B 84 484 98 HOH HOH . I 8 HOH B 85 485 99 HOH HOH . I 8 HOH B 86 486 100 HOH HOH . I 8 HOH B 87 487 101 HOH HOH . I 8 HOH B 88 488 102 HOH HOH . I 8 HOH B 89 489 103 HOH HOH . I 8 HOH B 90 490 104 HOH HOH . I 8 HOH B 91 491 105 HOH HOH . I 8 HOH B 92 492 106 HOH HOH . I 8 HOH B 93 493 107 HOH HOH . I 8 HOH B 94 494 108 HOH HOH . I 8 HOH B 95 495 109 HOH HOH . I 8 HOH B 96 496 112 HOH HOH . I 8 HOH B 97 497 113 HOH HOH . I 8 HOH B 98 498 114 HOH HOH . I 8 HOH B 99 499 115 HOH HOH . I 8 HOH B 100 500 116 HOH HOH . I 8 HOH B 101 501 117 HOH HOH . I 8 HOH B 102 502 118 HOH HOH . I 8 HOH B 103 503 119 HOH HOH . I 8 HOH B 104 504 120 HOH HOH . I 8 HOH B 105 505 121 HOH HOH . I 8 HOH B 106 506 122 HOH HOH . I 8 HOH B 107 507 123 HOH HOH . I 8 HOH B 108 508 124 HOH HOH . I 8 HOH B 109 509 125 HOH HOH . I 8 HOH B 110 510 126 HOH HOH . I 8 HOH B 111 511 127 HOH HOH . I 8 HOH B 112 512 128 HOH HOH . I 8 HOH B 113 513 130 HOH HOH . I 8 HOH B 114 514 133 HOH HOH . I 8 HOH B 115 515 134 HOH HOH . I 8 HOH B 116 516 135 HOH HOH . I 8 HOH B 117 517 137 HOH HOH . I 8 HOH B 118 518 138 HOH HOH . I 8 HOH B 119 519 139 HOH HOH . I 8 HOH B 120 520 140 HOH HOH . I 8 HOH B 121 521 141 HOH HOH . I 8 HOH B 122 522 142 HOH HOH . I 8 HOH B 123 523 144 HOH HOH . I 8 HOH B 124 524 145 HOH HOH . J 8 HOH A 1 101 20 HOH HOH . J 8 HOH A 2 102 21 HOH HOH . J 8 HOH A 3 103 26 HOH HOH . J 8 HOH A 4 104 32 HOH HOH . J 8 HOH A 5 105 34 HOH HOH . J 8 HOH A 6 106 38 HOH HOH . J 8 HOH A 7 107 44 HOH HOH . J 8 HOH A 8 108 45 HOH HOH . J 8 HOH A 9 109 49 HOH HOH . J 8 HOH A 10 110 50 HOH HOH . J 8 HOH A 11 111 53 HOH HOH . J 8 HOH A 12 112 68 HOH HOH . J 8 HOH A 13 113 82 HOH HOH . J 8 HOH A 14 114 83 HOH HOH . J 8 HOH A 15 115 110 HOH HOH . J 8 HOH A 16 116 111 HOH HOH . J 8 HOH A 17 117 129 HOH HOH . J 8 HOH A 18 118 131 HOH HOH . J 8 HOH A 19 119 132 HOH HOH . J 8 HOH A 20 120 136 HOH HOH . J 8 HOH A 21 121 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 19.832 _atom_site.Cartn_y -1.465 _atom_site.Cartn_z 30.396 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #