data_4RKS # _model_server_result.job_id APlsWQiFEFTUbNg-H-saEA _model_server_result.datetime_utc '2024-11-14 06:23:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4RKS # _exptl.entry_id 4RKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.149 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-MEVALONATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.22 _cell.angle_gamma 90 _cell.entry_id 4RKS _cell.length_a 147.99 _cell.length_b 61.19 _cell.length_c 103.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K 1 1 B,F,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 62 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 43 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 62 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 43 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H11 O4 -1' _chem_comp.formula_weight 147.149 _chem_comp.id MEV _chem_comp.mon_nstd_flag . _chem_comp.name (R)-MEVALONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 O8 MEV sing 256 n n C8 C2 MEV sing 257 n n C8 H81 MEV sing 258 n n C8 H82 MEV sing 259 n n O8 HX2 MEV sing 260 n n C2 C3 MEV sing 261 n n C2 H21 MEV sing 262 n n C2 H22 MEV sing 263 n n C3 O7 MEV sing 264 n n C3 C4 MEV sing 265 n n C3 C6 MEV sing 266 n n O7 HX MEV sing 267 n n C4 C5 MEV sing 268 n n C4 H41 MEV sing 269 n n C4 H42 MEV sing 270 n n C5 O3 MEV doub 271 n n C5 O4 MEV sing 272 n n C6 H61 MEV sing 273 n n C6 H62 MEV sing 274 n n C6 H63 MEV sing 275 n n # _atom_sites.entry_id 4RKS _atom_sites.fract_transf_matrix[1][1] 0.006757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MEV A 1 401 1 MEV MEV . D 3 SO4 A 1 402 3 SO4 SO4 . E 3 SO4 A 1 403 4 SO4 SO4 . F 2 MEV B 1 401 2 MEV MEV . G 4 ACT B 1 402 1 ACT ACT . H 3 SO4 B 1 403 1 SO4 SO4 . I 3 SO4 B 1 404 2 SO4 SO4 . J 5 GOL B 1 405 1 GOL GOL . K 6 HOH A 1 501 1 HOH HOH . K 6 HOH A 2 502 2 HOH HOH . K 6 HOH A 3 503 4 HOH HOH . K 6 HOH A 4 504 6 HOH HOH . K 6 HOH A 5 505 7 HOH HOH . K 6 HOH A 6 506 8 HOH HOH . K 6 HOH A 7 507 9 HOH HOH . K 6 HOH A 8 508 13 HOH HOH . K 6 HOH A 9 509 14 HOH HOH . K 6 HOH A 10 510 16 HOH HOH . K 6 HOH A 11 511 18 HOH HOH . K 6 HOH A 12 512 19 HOH HOH . K 6 HOH A 13 513 20 HOH HOH . K 6 HOH A 14 514 23 HOH HOH . K 6 HOH A 15 515 26 HOH HOH . K 6 HOH A 16 516 27 HOH HOH . K 6 HOH A 17 517 32 HOH HOH . K 6 HOH A 18 518 34 HOH HOH . K 6 HOH A 19 519 40 HOH HOH . K 6 HOH A 20 520 42 HOH HOH . K 6 HOH A 21 521 44 HOH HOH . K 6 HOH A 22 522 49 HOH HOH . K 6 HOH A 23 523 50 HOH HOH . K 6 HOH A 24 524 52 HOH HOH . K 6 HOH A 25 525 54 HOH HOH . K 6 HOH A 26 526 55 HOH HOH . K 6 HOH A 27 527 56 HOH HOH . K 6 HOH A 28 528 57 HOH HOH . K 6 HOH A 29 529 59 HOH HOH . K 6 HOH A 30 530 60 HOH HOH . K 6 HOH A 31 531 63 HOH HOH . K 6 HOH A 32 532 67 HOH HOH . K 6 HOH A 33 533 68 HOH HOH . K 6 HOH A 34 534 69 HOH HOH . K 6 HOH A 35 535 70 HOH HOH . K 6 HOH A 36 536 71 HOH HOH . K 6 HOH A 37 537 72 HOH HOH . K 6 HOH A 38 538 74 HOH HOH . K 6 HOH A 39 539 75 HOH HOH . K 6 HOH A 40 540 79 HOH HOH . K 6 HOH A 41 541 80 HOH HOH . K 6 HOH A 42 542 81 HOH HOH . K 6 HOH A 43 543 87 HOH HOH . K 6 HOH A 44 544 88 HOH HOH . K 6 HOH A 45 545 93 HOH HOH . K 6 HOH A 46 546 97 HOH HOH . K 6 HOH A 47 547 100 HOH HOH . K 6 HOH A 48 548 101 HOH HOH . K 6 HOH A 49 549 102 HOH HOH . K 6 HOH A 50 550 103 HOH HOH . K 6 HOH A 51 551 104 HOH HOH . K 6 HOH A 52 552 105 HOH HOH . K 6 HOH A 53 553 107 HOH HOH . K 6 HOH A 54 554 110 HOH HOH . K 6 HOH A 55 555 111 HOH HOH . K 6 HOH A 56 556 112 HOH HOH . K 6 HOH A 57 557 113 HOH HOH . K 6 HOH A 58 558 115 HOH HOH . K 6 HOH A 59 559 117 HOH HOH . K 6 HOH A 60 560 118 HOH HOH . K 6 HOH A 61 561 121 HOH HOH . K 6 HOH A 62 562 122 HOH HOH . K 6 HOH A 63 563 123 HOH HOH . K 6 HOH A 64 564 124 HOH HOH . K 6 HOH A 65 565 126 HOH HOH . K 6 HOH A 66 566 127 HOH HOH . K 6 HOH A 67 567 133 HOH HOH . K 6 HOH A 68 568 134 HOH HOH . K 6 HOH A 69 569 135 HOH HOH . K 6 HOH A 70 570 136 HOH HOH . K 6 HOH A 71 571 137 HOH HOH . K 6 HOH A 72 572 138 HOH HOH . K 6 HOH A 73 573 139 HOH HOH . K 6 HOH A 74 574 140 HOH HOH . K 6 HOH A 75 575 141 HOH HOH . K 6 HOH A 76 576 142 HOH HOH . K 6 HOH A 77 577 143 HOH HOH . K 6 HOH A 78 578 145 HOH HOH . K 6 HOH A 79 579 146 HOH HOH . K 6 HOH A 80 580 149 HOH HOH . K 6 HOH A 81 581 152 HOH HOH . K 6 HOH A 82 582 153 HOH HOH . K 6 HOH A 83 583 157 HOH HOH . K 6 HOH A 84 584 158 HOH HOH . K 6 HOH A 85 585 161 HOH HOH . K 6 HOH A 86 586 162 HOH HOH . K 6 HOH A 87 587 163 HOH HOH . K 6 HOH A 88 588 164 HOH HOH . K 6 HOH A 89 589 165 HOH HOH . K 6 HOH A 90 590 169 HOH HOH . K 6 HOH A 91 591 171 HOH HOH . K 6 HOH A 92 592 172 HOH HOH . K 6 HOH A 93 593 179 HOH HOH . K 6 HOH A 94 594 180 HOH HOH . K 6 HOH A 95 595 181 HOH HOH . K 6 HOH A 96 596 183 HOH HOH . K 6 HOH A 97 597 186 HOH HOH . K 6 HOH A 98 598 187 HOH HOH . K 6 HOH A 99 599 188 HOH HOH . L 6 HOH B 1 501 3 HOH HOH . L 6 HOH B 2 502 5 HOH HOH . L 6 HOH B 3 503 10 HOH HOH . L 6 HOH B 4 504 11 HOH HOH . L 6 HOH B 5 505 12 HOH HOH . L 6 HOH B 6 506 15 HOH HOH . L 6 HOH B 7 507 17 HOH HOH . L 6 HOH B 8 508 21 HOH HOH . L 6 HOH B 9 509 22 HOH HOH . L 6 HOH B 10 510 24 HOH HOH . L 6 HOH B 11 511 25 HOH HOH . L 6 HOH B 12 512 28 HOH HOH . L 6 HOH B 13 513 29 HOH HOH . L 6 HOH B 14 514 30 HOH HOH . L 6 HOH B 15 515 31 HOH HOH . L 6 HOH B 16 516 33 HOH HOH . L 6 HOH B 17 517 35 HOH HOH . L 6 HOH B 18 518 36 HOH HOH . L 6 HOH B 19 519 37 HOH HOH . L 6 HOH B 20 520 38 HOH HOH . L 6 HOH B 21 521 39 HOH HOH . L 6 HOH B 22 522 41 HOH HOH . L 6 HOH B 23 523 43 HOH HOH . L 6 HOH B 24 524 45 HOH HOH . L 6 HOH B 25 525 46 HOH HOH . L 6 HOH B 26 526 47 HOH HOH . L 6 HOH B 27 527 48 HOH HOH . L 6 HOH B 28 528 51 HOH HOH . L 6 HOH B 29 529 53 HOH HOH . L 6 HOH B 30 530 58 HOH HOH . L 6 HOH B 31 531 61 HOH HOH . L 6 HOH B 32 532 62 HOH HOH . L 6 HOH B 33 533 64 HOH HOH . L 6 HOH B 34 534 65 HOH HOH . L 6 HOH B 35 535 66 HOH HOH . L 6 HOH B 36 536 73 HOH HOH . L 6 HOH B 37 537 76 HOH HOH . L 6 HOH B 38 538 77 HOH HOH . L 6 HOH B 39 539 78 HOH HOH . L 6 HOH B 40 540 82 HOH HOH . L 6 HOH B 41 541 83 HOH HOH . L 6 HOH B 42 542 84 HOH HOH . L 6 HOH B 43 543 85 HOH HOH . L 6 HOH B 44 544 86 HOH HOH . L 6 HOH B 45 545 89 HOH HOH . L 6 HOH B 46 546 90 HOH HOH . L 6 HOH B 47 547 91 HOH HOH . L 6 HOH B 48 548 92 HOH HOH . L 6 HOH B 49 549 94 HOH HOH . L 6 HOH B 50 550 95 HOH HOH . L 6 HOH B 51 551 96 HOH HOH . L 6 HOH B 52 552 98 HOH HOH . L 6 HOH B 53 553 99 HOH HOH . L 6 HOH B 54 554 106 HOH HOH . L 6 HOH B 55 555 108 HOH HOH . L 6 HOH B 56 556 109 HOH HOH . L 6 HOH B 57 557 114 HOH HOH . L 6 HOH B 58 558 116 HOH HOH . L 6 HOH B 59 559 119 HOH HOH . L 6 HOH B 60 560 120 HOH HOH . L 6 HOH B 61 561 125 HOH HOH . L 6 HOH B 62 562 128 HOH HOH . L 6 HOH B 63 563 129 HOH HOH . L 6 HOH B 64 564 130 HOH HOH . L 6 HOH B 65 565 131 HOH HOH . L 6 HOH B 66 566 132 HOH HOH . L 6 HOH B 67 567 144 HOH HOH . L 6 HOH B 68 568 147 HOH HOH . L 6 HOH B 69 569 148 HOH HOH . L 6 HOH B 70 570 150 HOH HOH . L 6 HOH B 71 571 154 HOH HOH . L 6 HOH B 72 572 155 HOH HOH . L 6 HOH B 73 573 156 HOH HOH . L 6 HOH B 74 574 159 HOH HOH . L 6 HOH B 75 575 160 HOH HOH . L 6 HOH B 76 576 166 HOH HOH . L 6 HOH B 77 577 167 HOH HOH . L 6 HOH B 78 578 168 HOH HOH . L 6 HOH B 79 579 170 HOH HOH . L 6 HOH B 80 580 173 HOH HOH . L 6 HOH B 81 581 174 HOH HOH . L 6 HOH B 82 582 176 HOH HOH . L 6 HOH B 83 583 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 MEV . . . F 2 13.086 5.324 33.943 1 53.52 ? C8 MEV 401 B 1 HETATM 2 O O8 MEV . . . F 2 12.337 6.517 33.877 1 56.97 ? O8 MEV 401 B 1 HETATM 3 C C2 MEV . . . F 2 12.583 4.54 35.129 1 38.65 ? C2 MEV 401 B 1 HETATM 4 C C3 MEV . . . F 2 13.598 3.547 35.647 1 31.48 ? C3 MEV 401 B 1 HETATM 5 O O7 MEV . . . F 2 14.781 3.57 34.875 1 35.01 ? O7 MEV 401 B 1 HETATM 6 C C4 MEV . . . F 2 13.915 3.933 37.077 1 22.39 ? C4 MEV 401 B 1 HETATM 7 C C5 MEV . . . F 2 14.835 5.148 37.173 1 27.23 ? C5 MEV 401 B 1 HETATM 8 O O3 MEV . . . F 2 15.876 5.186 36.479 1 27.43 ? O3 MEV 401 B 1 HETATM 9 O O4 MEV . . . F 2 14.596 6.125 37.95 1 23.14 ? O4 MEV 401 B 1 HETATM 10 C C6 MEV . . . F 2 13.005 2.154 35.571 1 25.34 ? C6 MEV 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #