data_4RLD # _model_server_result.job_id 1m7bY5uWyraBs6W_0-KjGw _model_server_result.datetime_utc '2024-11-05 00:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 4RLD # _exptl.entry_id 4RLD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RLD _cell.length_a 66.819 _cell.length_b 75.41 _cell.length_c 339.852 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,M 1 1 B,F,J,N 2 1 C,G,K,O 3 1 D,H,L,P 4 1 A,B,E,F,I,J,M,N 5 1 C,D,G,H,K,L,O,P 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG S 501 NAG 2 n E NAG 2 E 2 NAG S 502 NAG 2 n F NAG 1 F 1 NAG S 503 NAG 2 n F NAG 2 F 2 NAG S 504 NAG 2 n G NAG 1 G 1 NAG S 505 NAG 2 n G NAG 2 G 2 NAG S 506 NAG 2 n H NAG 1 H 1 NAG S 507 NAG 2 n H NAG 2 H 2 NAG S 508 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 36 1_555 A SG CYS 131 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 48 A CYS 45 1_555 A SG CYS 53 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 55 A CYS 51 1_555 A SG CYS 116 A CYS 113 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 241 A CYS 237 1_555 A SG CYS 252 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 256 A CYS 249 1_555 A SG CYS 289 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 B SG CYS 39 B CYS 36 1_555 B SG CYS 131 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 B SG CYS 48 B CYS 45 1_555 B SG CYS 53 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 B SG CYS 55 B CYS 51 1_555 B SG CYS 116 B CYS 113 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 B SG CYS 241 B CYS 237 1_555 B SG CYS 252 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf10 B SG CYS 256 B CYS 249 1_555 B SG CYS 289 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 C SG CYS 39 C CYS 36 1_555 C SG CYS 131 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 C SG CYS 48 C CYS 45 1_555 C SG CYS 53 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 C SG CYS 55 C CYS 51 1_555 C SG CYS 116 C CYS 113 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 C SG CYS 241 C CYS 237 1_555 C SG CYS 252 C CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf15 C SG CYS 256 C CYS 249 1_555 C SG CYS 289 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf16 D SG CYS 39 D CYS 36 1_555 D SG CYS 131 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf17 D SG CYS 48 D CYS 45 1_555 D SG CYS 53 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf18 D SG CYS 55 D CYS 51 1_555 D SG CYS 116 D CYS 113 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf19 D SG CYS 241 D CYS 237 1_555 D SG CYS 252 D CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf20 D SG CYS 256 D CYS 249 1_555 D SG CYS 289 D CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 275 A ASN 268 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 275 B ASN 268 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 C ND2 ASN 275 C ASN 268 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale4 D ND2 ASN 275 D ASN 268 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A ND1 HIS 158 A HIS 155 1_555 I ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A NE2 HIS 166 A HIS 161 1_555 I ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc3 A OD1 ASP 306 A ASP 303 1_555 I ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 A OD2 ASP 306 A ASP 303 1_555 I ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc5 A OD1 ASP 310 A ASP 307 1_555 I ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc6 B ND1 HIS 158 B HIS 155 1_555 J ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 B NE2 HIS 166 B HIS 161 1_555 J ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc8 B OD1 ASP 306 B ASP 303 1_555 J ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? metalc ? metalc9 B OD2 ASP 306 B ASP 303 1_555 J ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc10 B OD1 ASP 310 B ASP 307 1_555 J ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc11 C ND1 HIS 158 C HIS 155 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc12 C NE2 HIS 166 C HIS 161 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc13 C OD1 ASP 306 C ASP 303 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc14 C OD1 ASP 310 C ASP 307 1_555 K ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc15 D ND1 HIS 158 D HIS 155 1_555 L ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc16 D NE2 HIS 166 D HIS 161 1_555 L ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc17 D OD1 ASP 306 D ASP 303 1_555 L ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc18 D OD1 ASP 310 D ASP 307 1_555 L ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RLD _atom_sites.fract_transf_matrix[1][1] 0.014966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 503 1 ZN ZN . J 3 ZN B 1 403 2 ZN ZN . K 3 ZN C 1 403 3 ZN ZN . L 3 ZN D 1 403 4 ZN ZN . M 4 HOH A 1 601 6 HOH HOH . M 4 HOH A 2 602 15 HOH HOH . M 4 HOH A 3 603 27 HOH HOH . M 4 HOH A 4 604 42 HOH HOH . M 4 HOH A 5 605 49 HOH HOH . M 4 HOH A 6 606 59 HOH HOH . M 4 HOH A 7 607 73 HOH HOH . M 4 HOH A 8 608 98 HOH HOH . M 4 HOH A 9 609 115 HOH HOH . M 4 HOH A 10 610 133 HOH HOH . M 4 HOH A 11 611 244 HOH HOH . M 4 HOH A 12 612 288 HOH HOH . N 4 HOH B 1 501 2 HOH HOH . N 4 HOH B 2 502 14 HOH HOH . N 4 HOH B 3 503 17 HOH HOH . N 4 HOH B 4 504 24 HOH HOH . N 4 HOH B 5 505 58 HOH HOH . N 4 HOH B 6 506 66 HOH HOH . N 4 HOH B 7 507 109 HOH HOH . N 4 HOH B 8 508 122 HOH HOH . N 4 HOH B 9 509 123 HOH HOH . N 4 HOH B 10 510 143 HOH HOH . N 4 HOH B 11 511 160 HOH HOH . N 4 HOH B 12 512 258 HOH HOH . N 4 HOH B 13 513 260 HOH HOH . O 4 HOH C 1 501 26 HOH HOH . O 4 HOH C 2 502 28 HOH HOH . O 4 HOH C 3 503 38 HOH HOH . O 4 HOH C 4 504 45 HOH HOH . O 4 HOH C 5 505 155 HOH HOH . O 4 HOH C 6 506 333 HOH HOH . O 4 HOH C 7 507 365 HOH HOH . P 4 HOH D 1 501 65 HOH HOH . P 4 HOH D 2 502 214 HOH HOH . P 4 HOH D 3 503 234 HOH HOH . P 4 HOH D 4 504 311 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.631 _atom_site.Cartn_y 6.828 _atom_site.Cartn_z 88.136 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #