data_4RLP # _model_server_result.job_id 2KyHDmS391Tn2rLpj6JL2A _model_server_result.datetime_utc '2024-10-19 03:45:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rlp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RLP # _exptl.entry_id 4RLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 719.879 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[(amino-kappaN)methanethiolato](3-fluoro-9-methoxypyrido[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H,12H)-dionato-kappa~2~N,N')(N-methyl-1,4,7-trithiecan-9-amine-kappa~3~S~1~,S~4~,S~7~)ruthenium" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RLP _cell.length_a 62.13 _cell.length_b 126.371 _cell.length_c 110.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_855 -x+3,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 186.39 0 55.2855 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H29 F N5 O3 Ru S4' _chem_comp.formula_weight 719.879 _chem_comp.id 72B _chem_comp.mon_nstd_flag . _chem_comp.name "[(amino-kappaN)methanethiolato](3-fluoro-9-methoxypyrido[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H,12H)-dionato-kappa~2~N,N')(N-methyl-1,4,7-trithiecan-9-amine-kappa~3~S~1~,S~4~,S~7~)ruthenium" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3-fluoro-9-methoxypyrido[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H,12H)-dionato)(N-methyl-1,4,7-trithiacyclodecan-9-amine)ruthenium(II)-isothiocyanate;FL772 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O3 72B sing 1 n n O2 C10 72B doub 2 n n O3 C15 72B sing 3 n n N5 C10 72B sing 4 n n N5 C9 72B sing 5 n n C10 C11 72B sing 6 n n C15 C14 72B doub 7 n y C15 C16 72B sing 8 n y C14 C13 72B sing 9 n y C9 O1 72B doub 10 n n C9 C8 72B sing 11 n n C16 C17 72B doub 12 n y C11 C12 72B doub 13 n y C11 C8 72B sing 14 n y C13 C12 72B sing 15 n y C13 C18 72B doub 16 n y C12 C19 72B sing 17 n y C8 C7 72B doub 18 n y C17 C18 72B sing 19 n y C18 N1 72B sing 20 n y C19 N1 72B sing 21 n y C19 C20 72B doub 22 n y C7 C20 72B sing 23 n y C7 C6 72B sing 24 n y N1 RU 72B sing 25 n n C20 N2 72B sing 26 n y C6 C27 72B doub 27 n y N2 RU 72B sing 28 n n N2 C26 72B doub 29 n y C27 C26 72B sing 30 n y C27 F1 72B sing 31 n n C2 S3 72B sing 32 n n C2 C3 72B sing 33 n n S3 RU 72B sing 34 n n S3 C24 72B sing 35 n n RU S1 72B sing 36 n n RU N3 72B sing 37 n n RU S2 72B sing 38 n n S1 C3 72B sing 39 n n S1 C4 72B sing 40 n n N3 C1 72B sing 41 n n C1 S4 72B sing 42 n n C24 C23 72B sing 43 n n C4 C21 72B sing 44 n n S2 C23 72B sing 45 n n S2 C22 72B sing 46 n n C21 C22 72B sing 47 n n C21 N4 72B sing 48 n n N4 C5 72B sing 49 n n C1 H1 72B sing 50 n n C1 H2 72B sing 51 n n C2 H3 72B sing 52 n n C2 H4 72B sing 53 n n C3 H5 72B sing 54 n n C3 H6 72B sing 55 n n C4 H7 72B sing 56 n n C4 H8 72B sing 57 n n C5 H9 72B sing 58 n n C5 H10 72B sing 59 n n C5 H11 72B sing 60 n n S4 H12 72B sing 61 n n N4 H14 72B sing 62 n n N5 H16 72B sing 63 n n C6 H17 72B sing 64 n n C14 H18 72B sing 65 n n C16 H19 72B sing 66 n n C17 H20 72B sing 67 n n C21 H21 72B sing 68 n n C22 H22 72B sing 69 n n C22 H23 72B sing 70 n n C23 H24 72B sing 71 n n C23 H25 72B sing 72 n n C24 H26 72B sing 73 n n C24 H27 72B sing 74 n n C25 H28 72B sing 75 n n C25 H29 72B sing 76 n n C25 H30 72B sing 77 n n C26 H31 72B sing 78 n n # _atom_sites.entry_id 4RLP _atom_sites.fract_transf_matrix[1][1] 0.016095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 72B A 1 401 1 72B 72B . C 3 CL A 1 402 101 CL CL . D 3 CL A 1 403 102 CL CL . E 3 CL A 1 404 103 CL CL . F 3 CL A 1 405 104 CL CL . G 3 CL A 1 406 105 CL CL . H 3 CL A 1 407 106 CL CL . I 4 HOH A 1 501 1 HOH HOH . I 4 HOH A 2 502 2 HOH HOH . I 4 HOH A 3 503 3 HOH HOH . I 4 HOH A 4 504 4 HOH HOH . I 4 HOH A 5 505 5 HOH HOH . I 4 HOH A 6 506 6 HOH HOH . I 4 HOH A 7 507 7 HOH HOH . I 4 HOH A 8 508 8 HOH HOH . I 4 HOH A 9 509 9 HOH HOH . I 4 HOH A 10 510 10 HOH HOH . I 4 HOH A 11 511 11 HOH HOH . I 4 HOH A 12 512 12 HOH HOH . I 4 HOH A 13 513 13 HOH HOH . I 4 HOH A 14 514 14 HOH HOH . I 4 HOH A 15 515 15 HOH HOH . I 4 HOH A 16 516 16 HOH HOH . I 4 HOH A 17 517 17 HOH HOH . I 4 HOH A 18 518 18 HOH HOH . I 4 HOH A 19 519 19 HOH HOH . I 4 HOH A 20 520 20 HOH HOH . I 4 HOH A 21 521 21 HOH HOH . I 4 HOH A 22 522 22 HOH HOH . I 4 HOH A 23 523 23 HOH HOH . I 4 HOH A 24 524 24 HOH HOH . I 4 HOH A 25 525 25 HOH HOH . I 4 HOH A 26 526 26 HOH HOH . I 4 HOH A 27 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 72B . . . B 2 75.94 30.738 5.551 1 49.09 ? N1 72B 401 A 1 HETATM 2 N N2 72B . . . B 2 77.885 31.82 7.192 1 60.68 ? N2 72B 401 A 1 HETATM 3 C C1 72B . . . B 2 75.289 33.178 8.972 1 89.68 ? C1 72B 401 A 1 HETATM 4 C C2 72B . . . B 2 76.28 27.451 7.488 1 68.92 ? C2 72B 401 A 1 HETATM 5 C C3 72B . . . B 2 74.935 27.638 8.207 1 74.11 ? C3 72B 401 A 1 HETATM 6 C C4 72B . . . B 2 73.408 29.615 9.349 1 97.54 ? C4 72B 401 A 1 HETATM 7 C C5 72B . . . B 2 73.516 27.885 12.513 1 97.22 ? C5 72B 401 A 1 HETATM 8 RU RU 72B . . . B 2 76.129 30.704 7.656 1 92.21 2 RU 72B 401 A 1 HETATM 9 S S1 72B . . . B 2 74.318 29.319 7.854 1 111.64 ? S1 72B 401 A 1 HETATM 10 S S2 72B . . . B 2 76.573 30.847 9.902 1 140.62 ? S2 72B 401 A 1 HETATM 11 S S3 72B . . . B 2 77.416 28.833 7.584 1 76.45 ? S3 72B 401 A 1 HETATM 12 F F1 72B . . . B 2 80.785 33.513 8.297 1 55.98 ? F1 72B 401 A 1 HETATM 13 S S4 72B . . . B 2 75.534 34.078 10.237 1 106.75 ? S4 72B 401 A 1 HETATM 14 O O1 72B . . . B 2 81.077 33.988 3.158 1 49.37 ? O1 72B 401 A 1 HETATM 15 O O2 72B . . . B 2 77.758 32.115 0.63 1 36.35 ? O2 72B 401 A 1 HETATM 16 O O3 72B . . . B 2 73.53 29.539 0.694 1 64.15 ? O3 72B 401 A 1 HETATM 17 N N3 72B . . . B 2 75.099 32.405 7.894 1 75.53 ? N3 72B 401 A 1 HETATM 18 N N4 72B . . . B 2 73.205 29.234 11.848 1 96.46 ? N4 72B 401 A 1 HETATM 19 N N5 72B . . . B 2 79.55 33.15 1.623 1 42.51 ? N5 72B 401 A 1 HETATM 20 C C6 72B . . . B 2 80.044 33.197 6.063 1 49.19 ? C6 72B 401 A 1 HETATM 21 C C7 72B . . . B 2 79.093 32.665 5.22 1 40.39 ? C7 72B 401 A 1 HETATM 22 C C8 72B . . . B 2 79.057 32.723 3.819 1 31.71 ? C8 72B 401 A 1 HETATM 23 C C9 72B . . . B 2 80.023 33.361 2.897 1 38.02 ? C9 72B 401 A 1 HETATM 24 C C10 72B . . . B 2 78.37 32.433 1.639 1 40.8 ? C10 72B 401 A 1 HETATM 25 C C11 72B . . . B 2 78.078 32.176 3.04 1 36.34 ? C11 72B 401 A 1 HETATM 26 C C12 72B . . . B 2 77.001 31.483 3.658 1 38.48 ? C12 72B 401 A 1 HETATM 27 C C13 72B . . . B 2 75.851 30.809 3.222 1 39.88 ? C13 72B 401 A 1 HETATM 28 C C14 72B . . . B 2 75.341 30.563 2.03 1 42.65 ? C14 72B 401 A 1 HETATM 29 C C15 72B . . . B 2 74.17 29.861 1.883 1 47.19 ? C15 72B 401 A 1 HETATM 30 C C16 72B . . . B 2 73.526 29.409 2.99 1 53.67 ? C16 72B 401 A 1 HETATM 31 C C17 72B . . . B 2 74.048 29.651 4.325 1 57.15 ? C17 72B 401 A 1 HETATM 32 C C18 72B . . . B 2 75.218 30.358 4.44 1 41.01 ? C18 72B 401 A 1 HETATM 33 C C19 72B . . . B 2 77.016 31.414 5.034 1 48.11 ? C19 72B 401 A 1 HETATM 34 C C20 72B . . . B 2 78.021 31.978 5.833 1 51.06 ? C20 72B 401 A 1 HETATM 35 C C21 72B . . . B 2 74.132 29.556 10.681 1 98.54 ? C21 72B 401 A 1 HETATM 36 C C22 72B . . . B 2 75.133 30.683 10.968 1 88.89 ? C22 72B 401 A 1 HETATM 37 C C23 72B . . . B 2 77.57 29.3 10.324 1 101.47 ? C23 72B 401 A 1 HETATM 38 C C24 72B . . . B 2 78.167 28.688 9.237 1 96.87 ? C24 72B 401 A 1 HETATM 39 C C25 72B . . . B 2 74.28 29.89 -0.547 1 61.19 ? C25 72B 401 A 1 HETATM 40 C C26 72B . . . B 2 78.853 32.356 7.995 1 53.89 ? C26 72B 401 A 1 HETATM 41 C C27 72B . . . B 2 79.872 33.007 7.457 1 48.26 ? C27 72B 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #