data_4RMD # _model_server_result.job_id 6Oeq2cdWvjgqm75RyWsqXw _model_server_result.datetime_utc '2024-10-12 15:32:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 4RMD # _exptl.entry_id 4RMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.526 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,4E,6Z,8E)-8-[3-cyclopropyl-2-(3-methylbutyl)cyclohex-2-en-1-ylidene]-3,7-dimethylocta-2,4,6-trienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RMD _cell.length_a 65.971 _cell.length_b 65.971 _cell.length_c 112.347 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.942 131.942 56.1735 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H34 O2' _chem_comp.formula_weight 354.526 _chem_comp.id 3SW _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,4E,6Z,8E)-8-[3-cyclopropyl-2-(3-methylbutyl)cyclohex-2-en-1-ylidene]-3,7-dimethylocta-2,4,6-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C8 3SW sing 1 n n C9 C8 3SW doub 2 z n C9 C10 3SW sing 3 n n C11 C10 3SW doub 4 e n C11 C12 3SW sing 5 n n C8 C7 3SW sing 6 n n C13 C12 3SW doub 7 e n C13 C14 3SW sing 8 n n C1 C2 3SW sing 9 n n C1 C6 3SW sing 10 n n C12 C20 3SW sing 11 n n O1 C14 3SW doub 12 n n C2 C3 3SW sing 13 n n C14 O2 3SW sing 14 n n C7 C6 3SW doub 15 e n C6 C5 3SW sing 16 n n C3 C4 3SW sing 17 n n C5 C4 3SW doub 18 n n C5 C1' 3SW sing 19 n n C4 C6' 3SW sing 20 n n C1' C2' 3SW sing 21 n n C2' C3' 3SW sing 22 n n C6' C7' 3SW sing 23 n n C6' C8' 3SW sing 24 n n C7' C8' 3SW sing 25 n n C3' C5' 3SW sing 26 n n C3' C4' 3SW sing 27 n n C1 H1 3SW sing 28 n n C1 H2 3SW sing 29 n n C10 H3 3SW sing 30 n n C11 H4 3SW sing 31 n n C9 H5 3SW sing 32 n n O2 H6 3SW sing 33 n n C20 H7 3SW sing 34 n n C20 H8 3SW sing 35 n n C20 H9 3SW sing 36 n n C19 H10 3SW sing 37 n n C19 H11 3SW sing 38 n n C19 H12 3SW sing 39 n n C13 H13 3SW sing 40 n n C2 H14 3SW sing 41 n n C2 H15 3SW sing 42 n n C7 H16 3SW sing 43 n n C3 H17 3SW sing 44 n n C3 H18 3SW sing 45 n n C4' H19 3SW sing 46 n n C4' H20 3SW sing 47 n n C4' H21 3SW sing 48 n n C3' H22 3SW sing 49 n n C5' H23 3SW sing 50 n n C5' H24 3SW sing 51 n n C5' H25 3SW sing 52 n n C2' H26 3SW sing 53 n n C2' H27 3SW sing 54 n n C1' H28 3SW sing 55 n n C1' H29 3SW sing 56 n n C6' H30 3SW sing 57 n n C7' H31 3SW sing 58 n n C7' H32 3SW sing 59 n n C8' H33 3SW sing 60 n n C8' H34 3SW sing 61 n n # _atom_sites.entry_id 4RMD _atom_sites.fract_transf_matrix[1][1] 0.015158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3SW A 1 500 500 3SW 110 . D 4 HOH A 1 601 501 HOH HOH . D 4 HOH A 2 602 502 HOH HOH . D 4 HOH A 3 603 503 HOH HOH . D 4 HOH A 4 604 504 HOH HOH . D 4 HOH A 5 605 505 HOH HOH . D 4 HOH A 6 606 506 HOH HOH . D 4 HOH A 7 607 507 HOH HOH . D 4 HOH A 8 608 508 HOH HOH . D 4 HOH A 9 609 509 HOH HOH . D 4 HOH A 10 610 510 HOH HOH . D 4 HOH A 11 611 511 HOH HOH . D 4 HOH A 12 612 512 HOH HOH . D 4 HOH A 13 613 513 HOH HOH . D 4 HOH A 14 614 515 HOH HOH . D 4 HOH A 15 615 516 HOH HOH . D 4 HOH A 16 616 517 HOH HOH . D 4 HOH A 17 617 518 HOH HOH . D 4 HOH A 18 618 519 HOH HOH . D 4 HOH A 19 619 520 HOH HOH . D 4 HOH A 20 620 521 HOH HOH . D 4 HOH A 21 621 522 HOH HOH . D 4 HOH A 22 622 523 HOH HOH . D 4 HOH A 23 623 524 HOH HOH . D 4 HOH A 24 624 525 HOH HOH . D 4 HOH A 25 625 526 HOH HOH . D 4 HOH A 26 626 528 HOH HOH . D 4 HOH A 27 627 529 HOH HOH . D 4 HOH A 28 628 530 HOH HOH . D 4 HOH A 29 629 531 HOH HOH . D 4 HOH A 30 630 532 HOH HOH . D 4 HOH A 31 631 533 HOH HOH . D 4 HOH A 32 632 534 HOH HOH . D 4 HOH A 33 633 535 HOH HOH . D 4 HOH A 34 634 536 HOH HOH . D 4 HOH A 35 635 538 HOH HOH . D 4 HOH A 36 636 539 HOH HOH . D 4 HOH A 37 637 540 HOH HOH . D 4 HOH A 38 638 541 HOH HOH . D 4 HOH A 39 639 542 HOH HOH . D 4 HOH A 40 640 543 HOH HOH . D 4 HOH A 41 641 544 HOH HOH . D 4 HOH A 42 642 545 HOH HOH . D 4 HOH A 43 643 546 HOH HOH . D 4 HOH A 44 644 547 HOH HOH . D 4 HOH A 45 645 548 HOH HOH . D 4 HOH A 46 646 549 HOH HOH . D 4 HOH A 47 647 554 HOH HOH . D 4 HOH A 48 648 555 HOH HOH . D 4 HOH A 49 649 556 HOH HOH . D 4 HOH A 50 650 557 HOH HOH . D 4 HOH A 51 651 558 HOH HOH . D 4 HOH A 52 652 559 HOH HOH . D 4 HOH A 53 653 561 HOH HOH . D 4 HOH A 54 654 563 HOH HOH . D 4 HOH A 55 655 564 HOH HOH . D 4 HOH A 56 656 565 HOH HOH . D 4 HOH A 57 657 566 HOH HOH . D 4 HOH A 58 658 567 HOH HOH . D 4 HOH A 59 659 569 HOH HOH . D 4 HOH A 60 660 570 HOH HOH . D 4 HOH A 61 661 571 HOH HOH . D 4 HOH A 62 662 572 HOH HOH . D 4 HOH A 63 663 573 HOH HOH . D 4 HOH A 64 664 574 HOH HOH . D 4 HOH A 65 665 575 HOH HOH . D 4 HOH A 66 666 576 HOH HOH . D 4 HOH A 67 667 577 HOH HOH . D 4 HOH A 68 668 578 HOH HOH . D 4 HOH A 69 669 580 HOH HOH . D 4 HOH A 70 670 581 HOH HOH . D 4 HOH A 71 671 583 HOH HOH . D 4 HOH A 72 672 584 HOH HOH . D 4 HOH A 73 673 585 HOH HOH . D 4 HOH A 74 674 586 HOH HOH . D 4 HOH A 75 675 588 HOH HOH . D 4 HOH A 76 676 589 HOH HOH . D 4 HOH A 77 677 590 HOH HOH . D 4 HOH A 78 678 591 HOH HOH . D 4 HOH A 79 679 592 HOH HOH . D 4 HOH A 80 680 593 HOH HOH . D 4 HOH A 81 681 594 HOH HOH . D 4 HOH A 82 682 595 HOH HOH . D 4 HOH A 83 683 596 HOH HOH . D 4 HOH A 84 684 597 HOH HOH . D 4 HOH A 85 685 598 HOH HOH . D 4 HOH A 86 686 599 HOH HOH . D 4 HOH A 87 687 601 HOH HOH . D 4 HOH A 88 688 602 HOH HOH . D 4 HOH A 89 689 603 HOH HOH . D 4 HOH A 90 690 605 HOH HOH . D 4 HOH A 91 691 606 HOH HOH . D 4 HOH A 92 692 608 HOH HOH . D 4 HOH A 93 693 609 HOH HOH . D 4 HOH A 94 694 610 HOH HOH . D 4 HOH A 95 695 611 HOH HOH . D 4 HOH A 96 696 612 HOH HOH . D 4 HOH A 97 697 614 HOH HOH . D 4 HOH A 98 698 616 HOH HOH . D 4 HOH A 99 699 617 HOH HOH . D 4 HOH A 100 700 618 HOH HOH . D 4 HOH A 101 701 619 HOH HOH . D 4 HOH A 102 702 620 HOH HOH . D 4 HOH A 103 703 621 HOH HOH . D 4 HOH A 104 704 622 HOH HOH . D 4 HOH A 105 705 623 HOH HOH . D 4 HOH A 106 706 624 HOH HOH . D 4 HOH A 107 707 628 HOH HOH . D 4 HOH A 108 708 629 HOH HOH . D 4 HOH A 109 709 631 HOH HOH . D 4 HOH A 110 710 632 HOH HOH . D 4 HOH A 111 711 633 HOH HOH . D 4 HOH A 112 712 634 HOH HOH . D 4 HOH A 113 713 635 HOH HOH . D 4 HOH A 114 714 636 HOH HOH . D 4 HOH A 115 715 637 HOH HOH . D 4 HOH A 116 716 638 HOH HOH . D 4 HOH A 117 717 639 HOH HOH . D 4 HOH A 118 718 640 HOH HOH . D 4 HOH A 119 719 641 HOH HOH . D 4 HOH A 120 720 642 HOH HOH . D 4 HOH A 121 721 643 HOH HOH . D 4 HOH A 122 722 562 HOH HOH . E 4 HOH B 1 501 600 HOH HOH . E 4 HOH B 2 502 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3SW . . . C 3 65.926 46.297 29.405 1 24.17 ? C1 3SW 500 A 1 HETATM 2 C C10 3SW . . . C 3 61.397 47.377 29.178 1 22.19 ? C10 3SW 500 A 1 HETATM 3 C C11 3SW . . . C 3 60.189 46.91 28.675 1 19.41 ? C11 3SW 500 A 1 HETATM 4 C C9 3SW . . . C 3 62.442 47.846 28.261 1 21.62 ? C9 3SW 500 A 1 HETATM 5 O O2 3SW . . . C 3 56.689 45.468 30.806 1 21.64 ? O2 3SW 500 A 1 HETATM 6 C C14 3SW . . . C 3 56.625 46.442 30.023 1 22.17 ? C14 3SW 500 A 1 HETATM 7 C C20 3SW . . . C 3 59.43 45.587 30.786 1 19.08 ? C20 3SW 500 A 1 HETATM 8 C C19 3SW . . . C 3 64.741 48.671 27.655 1 22.67 ? C19 3SW 500 A 1 HETATM 9 C C12 3SW . . . C 3 59.114 46.449 29.561 1 20.31 ? C12 3SW 500 A 1 HETATM 10 C C13 3SW . . . C 3 57.808 46.812 29.241 1 21.26 ? C13 3SW 500 A 1 HETATM 11 C C2 3SW . . . C 3 67.085 45.486 29.991 1 25.17 ? C2 3SW 500 A 1 HETATM 12 C C4 3SW . . . C 3 66.76 46.567 32.217 1 22.63 ? C4 3SW 500 A 1 HETATM 13 C C5 3SW . . . C 3 65.463 46.974 31.911 1 24.74 ? C5 3SW 500 A 1 HETATM 14 C C6 3SW . . . C 3 65.156 47.076 30.478 1 24.09 ? C6 3SW 500 A 1 HETATM 15 C C7 3SW . . . C 3 64.143 47.942 30.077 1 20.89 ? C7 3SW 500 A 1 HETATM 16 C C8 3SW . . . C 3 63.741 48.122 28.676 1 23.27 ? C8 3SW 500 A 1 HETATM 17 C C3 3SW . . . C 3 67.785 46.231 31.131 1 26.54 ? C3 3SW 500 A 1 HETATM 18 O O1 3SW . . . C 3 55.604 47.145 29.863 1 22.13 ? O1 3SW 500 A 1 HETATM 19 C C4' 3SW . . . C 3 64.936 48.772 35.845 1 25.77 ? C4' 3SW 500 A 1 HETATM 20 C C3' 3SW . . . C 3 63.837 48.98 34.801 1 23.59 ? C3' 3SW 500 A 1 HETATM 21 C C5' 3SW . . . C 3 62.612 48.111 35.1 1 26.58 ? C5' 3SW 500 A 1 HETATM 22 C C2' 3SW . . . C 3 64.378 48.762 33.384 1 26.8 ? C2' 3SW 500 A 1 HETATM 23 C C1' 3SW . . . C 3 64.428 47.282 32.998 1 25.83 ? C1' 3SW 500 A 1 HETATM 24 C C6' 3SW . . . C 3 67.191 46.502 33.685 1 23.2 ? C6' 3SW 500 A 1 HETATM 25 C C7' 3SW . . . C 3 68.543 45.841 33.967 1 22.32 ? C7' 3SW 500 A 1 HETATM 26 C C8' 3SW . . . C 3 67.244 45.107 34.311 1 23.35 ? C8' 3SW 500 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #