data_4RME # _model_server_result.job_id HIjFSPwN8mDPmeuxC5UOrA _model_server_result.datetime_utc '2025-02-05 15:53:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 4RME # _exptl.entry_id 4RME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.541 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,4E,6Z,8E)-3,7-dimethyl-8-[2-(3-methylbutyl)-3-(propan-2-yl)cyclohex-2-en-1-ylidene]octa-2,4,6-trienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RME _cell.length_a 65.971 _cell.length_b 65.971 _cell.length_c 112.347 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RME _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.942 131.942 56.1735 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H36 O2' _chem_comp.formula_weight 356.541 _chem_comp.id 3T2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,4E,6Z,8E)-3,7-dimethyl-8-[2-(3-methylbutyl)-3-(propan-2-yl)cyclohex-2-en-1-ylidene]octa-2,4,6-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C8 3T2 sing 1 n n C9 C8 3T2 doub 2 z n C9 C10 3T2 sing 3 n n C8 C7 3T2 sing 4 n n C11 C10 3T2 doub 5 e n C11 C12 3T2 sing 6 n n C5 C4 3T2 sing 7 n n C5 C6 3T2 sing 8 n n C13 C12 3T2 doub 9 e n C13 C14 3T2 sing 10 n n C4 C3 3T2 sing 11 n n C12 C20 3T2 sing 12 n n C7 C6 3T2 doub 13 e n O2 C14 3T2 doub 14 n n C14 O1 3T2 sing 15 n n C6 C1 3T2 sing 16 n n C3 C2 3T2 sing 17 n n C1 C2 3T2 doub 18 n n C1 C1' 3T2 sing 19 n n C2 C6' 3T2 sing 20 n n C1' C2' 3T2 sing 21 n n C8' C6' 3T2 sing 22 n n C6' C7' 3T2 sing 23 n n C2' C3' 3T2 sing 24 n n C3' C5' 3T2 sing 25 n n C3' C4' 3T2 sing 26 n n C13 H1 3T2 sing 27 n n C11 H2 3T2 sing 28 n n C9 H3 3T2 sing 29 n n C20 H4 3T2 sing 30 n n C20 H5 3T2 sing 31 n n C20 H6 3T2 sing 32 n n O1 H7 3T2 sing 33 n n C3 H8 3T2 sing 34 n n C3 H9 3T2 sing 35 n n C4 H10 3T2 sing 36 n n C4 H11 3T2 sing 37 n n C5 H12 3T2 sing 38 n n C5 H13 3T2 sing 39 n n C7 H14 3T2 sing 40 n n C10 H15 3T2 sing 41 n n C4' H16 3T2 sing 42 n n C4' H17 3T2 sing 43 n n C4' H18 3T2 sing 44 n n C3' H19 3T2 sing 45 n n C5' H20 3T2 sing 46 n n C5' H21 3T2 sing 47 n n C5' H22 3T2 sing 48 n n C2' H23 3T2 sing 49 n n C2' H24 3T2 sing 50 n n C1' H25 3T2 sing 51 n n C1' H26 3T2 sing 52 n n C6' H27 3T2 sing 53 n n C7' H28 3T2 sing 54 n n C7' H29 3T2 sing 55 n n C7' H30 3T2 sing 56 n n C8' H31 3T2 sing 57 n n C8' H32 3T2 sing 58 n n C8' H33 3T2 sing 59 n n C19 H34 3T2 sing 60 n n C19 H35 3T2 sing 61 n n C19 H36 3T2 sing 62 n n # _atom_sites.entry_id 4RME _atom_sites.fract_transf_matrix[1][1] 0.015158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3T2 A 1 500 500 3T2 111 . D 4 HOH A 1 601 501 HOH HOH . D 4 HOH A 2 602 502 HOH HOH . D 4 HOH A 3 603 503 HOH HOH . D 4 HOH A 4 604 504 HOH HOH . D 4 HOH A 5 605 505 HOH HOH . D 4 HOH A 6 606 506 HOH HOH . D 4 HOH A 7 607 507 HOH HOH . D 4 HOH A 8 608 508 HOH HOH . D 4 HOH A 9 609 509 HOH HOH . D 4 HOH A 10 610 510 HOH HOH . D 4 HOH A 11 611 511 HOH HOH . D 4 HOH A 12 612 512 HOH HOH . D 4 HOH A 13 613 513 HOH HOH . D 4 HOH A 14 614 516 HOH HOH . D 4 HOH A 15 615 518 HOH HOH . D 4 HOH A 16 616 519 HOH HOH . D 4 HOH A 17 617 521 HOH HOH . D 4 HOH A 18 618 522 HOH HOH . D 4 HOH A 19 619 523 HOH HOH . D 4 HOH A 20 620 524 HOH HOH . D 4 HOH A 21 621 525 HOH HOH . D 4 HOH A 22 622 526 HOH HOH . D 4 HOH A 23 623 528 HOH HOH . D 4 HOH A 24 624 529 HOH HOH . D 4 HOH A 25 625 530 HOH HOH . D 4 HOH A 26 626 531 HOH HOH . D 4 HOH A 27 627 532 HOH HOH . D 4 HOH A 28 628 533 HOH HOH . D 4 HOH A 29 629 534 HOH HOH . D 4 HOH A 30 630 535 HOH HOH . D 4 HOH A 31 631 536 HOH HOH . D 4 HOH A 32 632 539 HOH HOH . D 4 HOH A 33 633 540 HOH HOH . D 4 HOH A 34 634 541 HOH HOH . D 4 HOH A 35 635 542 HOH HOH . D 4 HOH A 36 636 544 HOH HOH . D 4 HOH A 37 637 545 HOH HOH . D 4 HOH A 38 638 546 HOH HOH . D 4 HOH A 39 639 548 HOH HOH . D 4 HOH A 40 640 549 HOH HOH . D 4 HOH A 41 641 555 HOH HOH . D 4 HOH A 42 642 556 HOH HOH . D 4 HOH A 43 643 557 HOH HOH . D 4 HOH A 44 644 558 HOH HOH . D 4 HOH A 45 645 561 HOH HOH . D 4 HOH A 46 646 562 HOH HOH . D 4 HOH A 47 647 564 HOH HOH . D 4 HOH A 48 648 565 HOH HOH . D 4 HOH A 49 649 567 HOH HOH . D 4 HOH A 50 650 568 HOH HOH . D 4 HOH A 51 651 569 HOH HOH . D 4 HOH A 52 652 570 HOH HOH . D 4 HOH A 53 653 571 HOH HOH . D 4 HOH A 54 654 572 HOH HOH . D 4 HOH A 55 655 573 HOH HOH . D 4 HOH A 56 656 574 HOH HOH . D 4 HOH A 57 657 575 HOH HOH . D 4 HOH A 58 658 577 HOH HOH . D 4 HOH A 59 659 581 HOH HOH . D 4 HOH A 60 660 582 HOH HOH . D 4 HOH A 61 661 584 HOH HOH . D 4 HOH A 62 662 585 HOH HOH . D 4 HOH A 63 663 586 HOH HOH . D 4 HOH A 64 664 587 HOH HOH . D 4 HOH A 65 665 588 HOH HOH . D 4 HOH A 66 666 589 HOH HOH . D 4 HOH A 67 667 590 HOH HOH . D 4 HOH A 68 668 591 HOH HOH . D 4 HOH A 69 669 592 HOH HOH . D 4 HOH A 70 670 593 HOH HOH . D 4 HOH A 71 671 594 HOH HOH . D 4 HOH A 72 672 595 HOH HOH . D 4 HOH A 73 673 597 HOH HOH . D 4 HOH A 74 674 598 HOH HOH . D 4 HOH A 75 675 599 HOH HOH . D 4 HOH A 76 676 600 HOH HOH . D 4 HOH A 77 677 601 HOH HOH . D 4 HOH A 78 678 602 HOH HOH . D 4 HOH A 79 679 603 HOH HOH . D 4 HOH A 80 680 605 HOH HOH . D 4 HOH A 81 681 606 HOH HOH . D 4 HOH A 82 682 608 HOH HOH . D 4 HOH A 83 683 609 HOH HOH . D 4 HOH A 84 684 610 HOH HOH . D 4 HOH A 85 685 611 HOH HOH . D 4 HOH A 86 686 612 HOH HOH . D 4 HOH A 87 687 615 HOH HOH . D 4 HOH A 88 688 616 HOH HOH . D 4 HOH A 89 689 617 HOH HOH . D 4 HOH A 90 690 618 HOH HOH . D 4 HOH A 91 691 619 HOH HOH . D 4 HOH A 92 692 620 HOH HOH . D 4 HOH A 93 693 621 HOH HOH . D 4 HOH A 94 694 622 HOH HOH . D 4 HOH A 95 695 623 HOH HOH . D 4 HOH A 96 696 624 HOH HOH . D 4 HOH A 97 697 628 HOH HOH . D 4 HOH A 98 698 629 HOH HOH . D 4 HOH A 99 699 630 HOH HOH . D 4 HOH A 100 700 632 HOH HOH . D 4 HOH A 101 701 633 HOH HOH . D 4 HOH A 102 702 634 HOH HOH . D 4 HOH A 103 703 637 HOH HOH . D 4 HOH A 104 704 638 HOH HOH . D 4 HOH A 105 705 640 HOH HOH . D 4 HOH A 106 706 641 HOH HOH . D 4 HOH A 107 707 642 HOH HOH . D 4 HOH A 108 708 643 HOH HOH . E 4 HOH B 1 501 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 3T2 . . . C 3 57.78 46.833 29.231 1 34 ? C13 3T2 500 A 1 HETATM 2 C C11 3T2 . . . C 3 60.144 46.944 28.633 1 34.3 ? C11 3T2 500 A 1 HETATM 3 C C9 3T2 . . . C 3 62.327 47.936 28.115 1 37.45 ? C9 3T2 500 A 1 HETATM 4 C C8 3T2 . . . C 3 63.637 48.287 28.424 1 36.8 ? C8 3T2 500 A 1 HETATM 5 C C20 3T2 . . . C 3 59.432 45.634 30.77 1 30.06 ? C20 3T2 500 A 1 HETATM 6 O O1 3T2 . . . C 3 56.66 45.445 30.75 1 31.7 ? O1 3T2 500 A 1 HETATM 7 O O2 3T2 . . . C 3 55.618 47.228 29.962 1 35.37 ? O2 3T2 500 A 1 HETATM 8 C C1 3T2 . . . C 3 65.516 47.158 31.561 1 36.39 ? C1 3T2 500 A 1 HETATM 9 C C2 3T2 . . . C 3 66.47 46.182 31.844 1 35.16 ? C2 3T2 500 A 1 HETATM 10 C C3 3T2 . . . C 3 66.931 45.099 30.861 1 35.61 ? C3 3T2 500 A 1 HETATM 11 C C4 3T2 . . . C 3 66.68 45.466 29.396 1 36.02 ? C4 3T2 500 A 1 HETATM 12 C C5 3T2 . . . C 3 65.275 46.037 29.19 1 37.34 ? C5 3T2 500 A 1 HETATM 13 C C6 3T2 . . . C 3 64.987 47.159 30.191 1 36.46 ? C6 3T2 500 A 1 HETATM 14 C C7 3T2 . . . C 3 64.18 48.217 29.785 1 37.39 ? C7 3T2 500 A 1 HETATM 15 C C10 3T2 . . . C 3 61.342 47.475 29.099 1 35.49 ? C10 3T2 500 A 1 HETATM 16 C C12 3T2 . . . C 3 59.09 46.48 29.541 1 33.04 ? C12 3T2 500 A 1 HETATM 17 C C14 3T2 . . . C 3 56.608 46.468 30.033 1 33.83 ? C14 3T2 500 A 1 HETATM 18 C C4' 3T2 . . . C 3 64.671 48.83 35.609 1 39.81 ? C4' 3T2 500 A 1 HETATM 19 C C3' 3T2 . . . C 3 63.568 48.69 34.558 1 36.86 ? C3' 3T2 500 A 1 HETATM 20 C C5' 3T2 . . . C 3 62.249 48.277 35.215 1 38.45 ? C5' 3T2 500 A 1 HETATM 21 C C2' 3T2 . . . C 3 63.962 47.675 33.483 1 35.74 ? C2' 3T2 500 A 1 HETATM 22 C C1' 3T2 . . . C 3 65.079 48.211 32.584 1 36.45 ? C1' 3T2 500 A 1 HETATM 23 C C6' 3T2 . . . C 3 67.134 46.2 33.226 1 33.04 ? C6' 3T2 500 A 1 HETATM 24 C C7' 3T2 . . . C 3 66.958 44.85 33.926 1 36.27 ? C7' 3T2 500 A 1 HETATM 25 C C8' 3T2 . . . C 3 68.617 46.555 33.103 1 34.65 ? C8' 3T2 500 A 1 HETATM 26 C C19 3T2 . . . C 3 64.528 48.841 27.311 1 38.28 ? C19 3T2 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #