data_4RMG
#
_model_server_result.job_id            OBr8pcxKYNdySTqXz9GRdg 
_model_server_result.datetime_utc      '2024-12-02 12:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rmg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    4RMG 
#
_exptl.entry_id    4RMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]-N-[5-(naphthalen-1-ylmethyl)-1,3-thiazol-2-yl]acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.82 
_cell.angle_gamma         90 
_cell.entry_id            4RMG 
_cell.length_a            83.701 
_cell.length_b            54.514 
_cell.length_c            96.693 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'C22 H20 N4 O S2' 
_chem_comp.formula_weight    420.55 
_chem_comp.id                3TE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]-N-[5-(naphthalen-1-ylmethyl)-1,3-thiazol-2-yl]acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C16 3TE sing 1 n n 
S1 C15 3TE sing 2 n n 
N2 C16 3TE doub 3 n y 
N2 C17 3TE sing 4 n y 
C18 C17 3TE sing 5 n n 
C8 C9 3TE doub 6 n y 
C8 C7 3TE sing 7 n y 
C16 N3 3TE sing 8 n y 
C9 C10 3TE sing 9 n y 
C17 C19 3TE doub 10 n y 
C15 C 3TE sing 11 n n 
O C 3TE doub 12 n n 
C N 3TE sing 13 n n 
C7 C6 3TE doub 14 n y 
N3 C20 3TE doub 15 n y 
C10 C11 3TE doub 16 n y 
C19 C20 3TE sing 17 n y 
N C1 3TE sing 18 n n 
C20 C21 3TE sing 19 n n 
S C1 3TE sing 20 n y 
S C3 3TE sing 21 n y 
C1 N1 3TE doub 22 n y 
C6 C11 3TE sing 23 n y 
C6 C5 3TE sing 24 n y 
C11 C12 3TE sing 25 n y 
N1 C2 3TE sing 26 n y 
C3 C2 3TE doub 27 n y 
C3 C4 3TE sing 28 n n 
C4 C5 3TE sing 29 n n 
C5 C14 3TE doub 30 n y 
C12 C13 3TE doub 31 n y 
C14 C13 3TE sing 32 n y 
C2 H1 3TE sing 33 n n 
C4 H2 3TE sing 34 n n 
C4 H3 3TE sing 35 n n 
C7 H4 3TE sing 36 n n 
C8 H5 3TE sing 37 n n 
C9 H6 3TE sing 38 n n 
C10 H7 3TE sing 39 n n 
C15 H8 3TE sing 40 n n 
C15 H9 3TE sing 41 n n 
C21 H10 3TE sing 42 n n 
C21 H11 3TE sing 43 n n 
C21 H12 3TE sing 44 n n 
C19 H13 3TE sing 45 n n 
C18 H14 3TE sing 46 n n 
C18 H15 3TE sing 47 n n 
C18 H16 3TE sing 48 n n 
N H17 3TE sing 49 n n 
C14 H18 3TE sing 50 n n 
C13 H19 3TE sing 51 n n 
C12 H20 3TE sing 52 n n 
#
_atom_sites.entry_id                     4RMG 
_atom_sites.fract_transf_matrix[1][1]    0.011947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005526 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018344 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 400 ZN ZN . 
C 3 3TE A 1 402 1 3TE M25 . 
D 4 NAD A 1 403 2 NAD NAD . 
E 5 HOH A 1 501 1 HOH HOH . 
E 5 HOH A 2 502 2 HOH HOH . 
E 5 HOH A 3 503 3 HOH HOH . 
E 5 HOH A 4 504 4 HOH HOH . 
E 5 HOH A 5 505 5 HOH HOH . 
E 5 HOH A 6 506 6 HOH HOH . 
E 5 HOH A 7 507 7 HOH HOH . 
E 5 HOH A 8 508 8 HOH HOH . 
E 5 HOH A 9 509 9 HOH HOH . 
E 5 HOH A 10 510 10 HOH HOH . 
E 5 HOH A 11 511 11 HOH HOH . 
E 5 HOH A 12 512 12 HOH HOH . 
E 5 HOH A 13 513 13 HOH HOH . 
E 5 HOH A 14 514 14 HOH HOH . 
E 5 HOH A 15 515 15 HOH HOH . 
E 5 HOH A 16 516 16 HOH HOH . 
E 5 HOH A 17 517 17 HOH HOH . 
E 5 HOH A 18 518 18 HOH HOH . 
E 5 HOH A 19 519 19 HOH HOH . 
E 5 HOH A 20 520 20 HOH HOH . 
E 5 HOH A 21 521 21 HOH HOH . 
E 5 HOH A 22 522 22 HOH HOH . 
E 5 HOH A 23 523 23 HOH HOH . 
E 5 HOH A 24 524 24 HOH HOH . 
E 5 HOH A 25 525 25 HOH HOH . 
E 5 HOH A 26 526 26 HOH HOH . 
E 5 HOH A 27 527 27 HOH HOH . 
E 5 HOH A 28 528 28 HOH HOH . 
E 5 HOH A 29 529 29 HOH HOH . 
E 5 HOH A 30 530 30 HOH HOH . 
E 5 HOH A 31 531 31 HOH HOH . 
E 5 HOH A 32 532 32 HOH HOH . 
E 5 HOH A 33 533 33 HOH HOH . 
E 5 HOH A 34 534 34 HOH HOH . 
E 5 HOH A 35 535 35 HOH HOH . 
E 5 HOH A 36 536 36 HOH HOH . 
E 5 HOH A 37 537 37 HOH HOH . 
E 5 HOH A 38 538 38 HOH HOH . 
E 5 HOH A 39 539 39 HOH HOH . 
E 5 HOH A 40 540 40 HOH HOH . 
E 5 HOH A 41 541 41 HOH HOH . 
E 5 HOH A 42 542 42 HOH HOH . 
E 5 HOH A 43 543 43 HOH HOH . 
E 5 HOH A 44 544 44 HOH HOH . 
E 5 HOH A 45 545 45 HOH HOH . 
E 5 HOH A 46 546 46 HOH HOH . 
E 5 HOH A 47 547 47 HOH HOH . 
E 5 HOH A 48 548 48 HOH HOH . 
E 5 HOH A 49 549 49 HOH HOH . 
E 5 HOH A 50 550 50 HOH HOH . 
E 5 HOH A 51 551 51 HOH HOH . 
E 5 HOH A 52 552 52 HOH HOH . 
E 5 HOH A 53 553 53 HOH HOH . 
E 5 HOH A 54 554 54 HOH HOH . 
E 5 HOH A 55 555 55 HOH HOH . 
E 5 HOH A 56 556 56 HOH HOH . 
E 5 HOH A 57 557 57 HOH HOH . 
E 5 HOH A 58 558 58 HOH HOH . 
E 5 HOH A 59 559 59 HOH HOH . 
E 5 HOH A 60 560 60 HOH HOH . 
E 5 HOH A 61 561 61 HOH HOH . 
E 5 HOH A 62 562 62 HOH HOH . 
E 5 HOH A 63 563 63 HOH HOH . 
E 5 HOH A 64 564 64 HOH HOH . 
E 5 HOH A 65 565 65 HOH HOH . 
E 5 HOH A 66 566 66 HOH HOH . 
E 5 HOH A 67 567 67 HOH HOH . 
E 5 HOH A 68 568 68 HOH HOH . 
E 5 HOH A 69 569 69 HOH HOH . 
E 5 HOH A 70 570 70 HOH HOH . 
E 5 HOH A 71 571 71 HOH HOH . 
E 5 HOH A 72 572 72 HOH HOH . 
E 5 HOH A 73 573 73 HOH HOH . 
E 5 HOH A 74 574 74 HOH HOH . 
E 5 HOH A 75 575 75 HOH HOH . 
E 5 HOH A 76 576 76 HOH HOH . 
E 5 HOH A 77 577 77 HOH HOH . 
E 5 HOH A 78 578 78 HOH HOH . 
E 5 HOH A 79 579 79 HOH HOH . 
E 5 HOH A 80 580 80 HOH HOH . 
E 5 HOH A 81 581 81 HOH HOH . 
E 5 HOH A 82 582 82 HOH HOH . 
E 5 HOH A 83 583 83 HOH HOH . 
E 5 HOH A 84 584 84 HOH HOH . 
E 5 HOH A 85 585 85 HOH HOH . 
E 5 HOH A 86 586 86 HOH HOH . 
E 5 HOH A 87 587 87 HOH HOH . 
E 5 HOH A 88 588 88 HOH HOH . 
E 5 HOH A 89 589 89 HOH HOH . 
E 5 HOH A 90 590 90 HOH HOH . 
E 5 HOH A 91 591 91 HOH HOH . 
E 5 HOH A 92 592 92 HOH HOH . 
E 5 HOH A 93 593 93 HOH HOH . 
E 5 HOH A 94 594 94 HOH HOH . 
E 5 HOH A 95 595 95 HOH HOH . 
E 5 HOH A 96 596 96 HOH HOH . 
E 5 HOH A 97 597 97 HOH HOH . 
E 5 HOH A 98 598 98 HOH HOH . 
E 5 HOH A 99 599 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 3TE . . . C 3 -18.307 -25.207 13.658 1 31.31 ? C1 3TE 402 A 1 
HETATM 2 C C2 3TE . . . C 3 -16.74 -26.044 14.913 1 34.57 ? C2 3TE 402 A 1 
HETATM 3 C C3 3TE . . . C 3 -16.076 -24.936 14.536 1 31.09 ? C3 3TE 402 A 1 
HETATM 4 C C4 3TE . . . C 3 -14.67 -24.535 14.922 1 31.71 ? C4 3TE 402 A 1 
HETATM 5 C C5 3TE . . . C 3 -13.62 -25.627 14.967 1 33.14 ? C5 3TE 402 A 1 
HETATM 6 C C6 3TE . . . C 3 -13.226 -26.321 13.783 1 34.5 ? C6 3TE 402 A 1 
HETATM 7 S S 3TE . . . C 3 -17.082 -24.015 13.461 1 31.51 ? S 3TE 402 A 1 
HETATM 8 N N1 3TE . . . C 3 -18.005 -26.212 14.426 1 33.59 ? N1 3TE 402 A 1 
HETATM 9 C C7 3TE . . . C 3 -13.681 -25.965 12.485 1 33.04 ? C7 3TE 402 A 1 
HETATM 10 C C8 3TE . . . C 3 -13.245 -26.637 11.379 1 33.02 ? C8 3TE 402 A 1 
HETATM 11 N N2 3TE . . . C 3 -22.333 -28.25 10.77 1 27.46 ? N2 3TE 402 A 1 
HETATM 12 C C9 3TE . . . C 3 -12.355 -27.69 11.497 1 35.96 ? C9 3TE 402 A 1 
HETATM 13 C C10 3TE . . . C 3 -11.891 -28.072 12.719 1 33.94 ? C10 3TE 402 A 1 
HETATM 14 O O 3TE . . . C 3 -19.319 -23.157 12.007 1 31.55 ? O 3TE 402 A 1 
HETATM 15 C C 3TE . . . C 3 -19.951 -24.184 12.23 1 33.99 ? C 3TE 402 A 1 
HETATM 16 C C15 3TE . . . C 3 -21.304 -24.463 11.611 1 33.08 ? C15 3TE 402 A 1 
HETATM 17 S S1 3TE . . . C 3 -21.525 -25.778 10.392 1 34.23 ? S1 3TE 402 A 1 
HETATM 18 C C16 3TE . . . C 3 -21.92 -27.156 11.396 1 28.5 ? C16 3TE 402 A 1 
HETATM 19 N N3 3TE . . . C 3 -21.664 -27.005 12.699 1 30.11 ? N3 3TE 402 A 1 
HETATM 20 C C20 3TE . . . C 3 -21.895 -28.083 13.46 1 27.53 ? C20 3TE 402 A 1 
HETATM 21 C C21 3TE . . . C 3 -21.467 -27.989 14.89 1 30.22 ? C21 3TE 402 A 1 
HETATM 22 C C19 3TE . . . C 3 -22.41 -29.239 12.923 1 27.59 ? C19 3TE 402 A 1 
HETATM 23 C C17 3TE . . . C 3 -22.63 -29.29 11.559 1 29.39 ? C17 3TE 402 A 1 
HETATM 24 C C18 3TE . . . C 3 -23.263 -30.474 10.898 1 28.93 ? C18 3TE 402 A 1 
HETATM 25 N N 3TE . . . C 3 -19.57 -25.114 13.146 1 32.62 ? N 3TE 402 A 1 
HETATM 26 C C14 3TE . . . C 3 -13.096 -26.024 16.175 1 33.94 ? C14 3TE 402 A 1 
HETATM 27 C C13 3TE . . . C 3 -12.225 -27.093 16.271 1 35.16 ? C13 3TE 402 A 1 
HETATM 28 C C12 3TE . . . C 3 -11.837 -27.777 15.161 1 36 ? C12 3TE 402 A 1 
HETATM 29 C C11 3TE . . . C 3 -12.306 -27.407 13.889 1 35.71 ? C11 3TE 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#