data_4RMG
#
_model_server_result.job_id            Xshcdb_2gmo1SepO0somyA 
_model_server_result.datetime_utc      '2024-11-13 19:01:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rmg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    4RMG 
#
_exptl.entry_id    4RMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.82 
_cell.angle_gamma         90 
_cell.entry_id            4RMG 
_cell.length_a            83.701 
_cell.length_b            54.514 
_cell.length_c            96.693 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 289 n n 
PA O2A NAD sing 290 n n 
PA O5B NAD sing 291 n n 
PA O3 NAD sing 292 n n 
O2A HOA2 NAD sing 293 n n 
O5B C5B NAD sing 294 n n 
C5B C4B NAD sing 295 n n 
C5B H51A NAD sing 296 n n 
C5B H52A NAD sing 297 n n 
C4B O4B NAD sing 298 n n 
C4B C3B NAD sing 299 n n 
C4B H4B NAD sing 300 n n 
O4B C1B NAD sing 301 n n 
C3B O3B NAD sing 302 n n 
C3B C2B NAD sing 303 n n 
C3B H3B NAD sing 304 n n 
O3B HO3A NAD sing 305 n n 
C2B O2B NAD sing 306 n n 
C2B C1B NAD sing 307 n n 
C2B H2B NAD sing 308 n n 
O2B HO2A NAD sing 309 n n 
C1B N9A NAD sing 310 n n 
C1B H1B NAD sing 311 n n 
N9A C8A NAD sing 312 n y 
N9A C4A NAD sing 313 n y 
C8A N7A NAD doub 314 n y 
C8A H8A NAD sing 315 n n 
N7A C5A NAD sing 316 n y 
C5A C6A NAD sing 317 n y 
C5A C4A NAD doub 318 n y 
C6A N6A NAD sing 319 n n 
C6A N1A NAD doub 320 n y 
N6A H61A NAD sing 321 n n 
N6A H62A NAD sing 322 n n 
N1A C2A NAD sing 323 n y 
C2A N3A NAD doub 324 n y 
C2A H2A NAD sing 325 n n 
N3A C4A NAD sing 326 n y 
O3 PN NAD sing 327 n n 
PN O1N NAD doub 328 n n 
PN O2N NAD sing 329 n n 
PN O5D NAD sing 330 n n 
O5D C5D NAD sing 331 n n 
C5D C4D NAD sing 332 n n 
C5D H51N NAD sing 333 n n 
C5D H52N NAD sing 334 n n 
C4D O4D NAD sing 335 n n 
C4D C3D NAD sing 336 n n 
C4D H4D NAD sing 337 n n 
O4D C1D NAD sing 338 n n 
C3D O3D NAD sing 339 n n 
C3D C2D NAD sing 340 n n 
C3D H3D NAD sing 341 n n 
O3D HO3N NAD sing 342 n n 
C2D O2D NAD sing 343 n n 
C2D C1D NAD sing 344 n n 
C2D H2D NAD sing 345 n n 
O2D HO2N NAD sing 346 n n 
C1D N1N NAD sing 347 n n 
C1D H1D NAD sing 348 n n 
N1N C2N NAD sing 349 n y 
N1N C6N NAD doub 350 n y 
C2N C3N NAD doub 351 n y 
C2N H2N NAD sing 352 n n 
C3N C7N NAD sing 353 n n 
C3N C4N NAD sing 354 n y 
C7N O7N NAD doub 355 n n 
C7N N7N NAD sing 356 n n 
N7N H71N NAD sing 357 n n 
N7N H72N NAD sing 358 n n 
C4N C5N NAD doub 359 n y 
C4N H4N NAD sing 360 n n 
C5N C6N NAD sing 361 n y 
C5N H5N NAD sing 362 n n 
C6N H6N NAD sing 363 n n 
#
_atom_sites.entry_id                     4RMG 
_atom_sites.fract_transf_matrix[1][1]    0.011947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005526 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018344 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 400 ZN ZN . 
C 3 3TE A 1 402 1 3TE M25 . 
D 4 NAD A 1 403 2 NAD NAD . 
E 5 HOH A 1 501 1 HOH HOH . 
E 5 HOH A 2 502 2 HOH HOH . 
E 5 HOH A 3 503 3 HOH HOH . 
E 5 HOH A 4 504 4 HOH HOH . 
E 5 HOH A 5 505 5 HOH HOH . 
E 5 HOH A 6 506 6 HOH HOH . 
E 5 HOH A 7 507 7 HOH HOH . 
E 5 HOH A 8 508 8 HOH HOH . 
E 5 HOH A 9 509 9 HOH HOH . 
E 5 HOH A 10 510 10 HOH HOH . 
E 5 HOH A 11 511 11 HOH HOH . 
E 5 HOH A 12 512 12 HOH HOH . 
E 5 HOH A 13 513 13 HOH HOH . 
E 5 HOH A 14 514 14 HOH HOH . 
E 5 HOH A 15 515 15 HOH HOH . 
E 5 HOH A 16 516 16 HOH HOH . 
E 5 HOH A 17 517 17 HOH HOH . 
E 5 HOH A 18 518 18 HOH HOH . 
E 5 HOH A 19 519 19 HOH HOH . 
E 5 HOH A 20 520 20 HOH HOH . 
E 5 HOH A 21 521 21 HOH HOH . 
E 5 HOH A 22 522 22 HOH HOH . 
E 5 HOH A 23 523 23 HOH HOH . 
E 5 HOH A 24 524 24 HOH HOH . 
E 5 HOH A 25 525 25 HOH HOH . 
E 5 HOH A 26 526 26 HOH HOH . 
E 5 HOH A 27 527 27 HOH HOH . 
E 5 HOH A 28 528 28 HOH HOH . 
E 5 HOH A 29 529 29 HOH HOH . 
E 5 HOH A 30 530 30 HOH HOH . 
E 5 HOH A 31 531 31 HOH HOH . 
E 5 HOH A 32 532 32 HOH HOH . 
E 5 HOH A 33 533 33 HOH HOH . 
E 5 HOH A 34 534 34 HOH HOH . 
E 5 HOH A 35 535 35 HOH HOH . 
E 5 HOH A 36 536 36 HOH HOH . 
E 5 HOH A 37 537 37 HOH HOH . 
E 5 HOH A 38 538 38 HOH HOH . 
E 5 HOH A 39 539 39 HOH HOH . 
E 5 HOH A 40 540 40 HOH HOH . 
E 5 HOH A 41 541 41 HOH HOH . 
E 5 HOH A 42 542 42 HOH HOH . 
E 5 HOH A 43 543 43 HOH HOH . 
E 5 HOH A 44 544 44 HOH HOH . 
E 5 HOH A 45 545 45 HOH HOH . 
E 5 HOH A 46 546 46 HOH HOH . 
E 5 HOH A 47 547 47 HOH HOH . 
E 5 HOH A 48 548 48 HOH HOH . 
E 5 HOH A 49 549 49 HOH HOH . 
E 5 HOH A 50 550 50 HOH HOH . 
E 5 HOH A 51 551 51 HOH HOH . 
E 5 HOH A 52 552 52 HOH HOH . 
E 5 HOH A 53 553 53 HOH HOH . 
E 5 HOH A 54 554 54 HOH HOH . 
E 5 HOH A 55 555 55 HOH HOH . 
E 5 HOH A 56 556 56 HOH HOH . 
E 5 HOH A 57 557 57 HOH HOH . 
E 5 HOH A 58 558 58 HOH HOH . 
E 5 HOH A 59 559 59 HOH HOH . 
E 5 HOH A 60 560 60 HOH HOH . 
E 5 HOH A 61 561 61 HOH HOH . 
E 5 HOH A 62 562 62 HOH HOH . 
E 5 HOH A 63 563 63 HOH HOH . 
E 5 HOH A 64 564 64 HOH HOH . 
E 5 HOH A 65 565 65 HOH HOH . 
E 5 HOH A 66 566 66 HOH HOH . 
E 5 HOH A 67 567 67 HOH HOH . 
E 5 HOH A 68 568 68 HOH HOH . 
E 5 HOH A 69 569 69 HOH HOH . 
E 5 HOH A 70 570 70 HOH HOH . 
E 5 HOH A 71 571 71 HOH HOH . 
E 5 HOH A 72 572 72 HOH HOH . 
E 5 HOH A 73 573 73 HOH HOH . 
E 5 HOH A 74 574 74 HOH HOH . 
E 5 HOH A 75 575 75 HOH HOH . 
E 5 HOH A 76 576 76 HOH HOH . 
E 5 HOH A 77 577 77 HOH HOH . 
E 5 HOH A 78 578 78 HOH HOH . 
E 5 HOH A 79 579 79 HOH HOH . 
E 5 HOH A 80 580 80 HOH HOH . 
E 5 HOH A 81 581 81 HOH HOH . 
E 5 HOH A 82 582 82 HOH HOH . 
E 5 HOH A 83 583 83 HOH HOH . 
E 5 HOH A 84 584 84 HOH HOH . 
E 5 HOH A 85 585 85 HOH HOH . 
E 5 HOH A 86 586 86 HOH HOH . 
E 5 HOH A 87 587 87 HOH HOH . 
E 5 HOH A 88 588 88 HOH HOH . 
E 5 HOH A 89 589 89 HOH HOH . 
E 5 HOH A 90 590 90 HOH HOH . 
E 5 HOH A 91 591 91 HOH HOH . 
E 5 HOH A 92 592 92 HOH HOH . 
E 5 HOH A 93 593 93 HOH HOH . 
E 5 HOH A 94 594 94 HOH HOH . 
E 5 HOH A 95 595 95 HOH HOH . 
E 5 HOH A 96 596 96 HOH HOH . 
E 5 HOH A 97 597 97 HOH HOH . 
E 5 HOH A 98 598 98 HOH HOH . 
E 5 HOH A 99 599 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 4 -13.417 -17.692 4.114 1 50.68 ? PA NAD 403 A 1 
HETATM 2 O O1A NAD . . . D 4 -12.806 -17.605 5.459 1 43.21 ? O1A NAD 403 A 1 
HETATM 3 O O2A NAD . . . D 4 -12.613 -17.274 2.94 1 48.3 ? O2A NAD 403 A 1 
HETATM 4 O O5B NAD . . . D 4 -14.793 -16.879 4.135 1 52.71 ? O5B NAD 403 A 1 
HETATM 5 C C5B NAD . . . D 4 -15.716 -17.009 3.032 1 47.83 ? C5B NAD 403 A 1 
HETATM 6 C C4B NAD . . . D 4 -15.383 -16.066 1.897 1 46.15 ? C4B NAD 403 A 1 
HETATM 7 O O4B NAD . . . D 4 -16.571 -15.876 1.089 1 44.49 ? O4B NAD 403 A 1 
HETATM 8 C C3B NAD . . . D 4 -14.93 -14.651 2.242 1 47.27 ? C3B NAD 403 A 1 
HETATM 9 O O3B NAD . . . D 4 -14.199 -14.129 1.13 1 48.56 ? O3B NAD 403 A 1 
HETATM 10 C C2B NAD . . . D 4 -16.265 -13.903 2.346 1 48.31 ? C2B NAD 403 A 1 
HETATM 11 O O2B NAD . . . D 4 -16.214 -12.512 2.059 1 52 ? O2B NAD 403 A 1 
HETATM 12 C C1B NAD . . . D 4 -17.02 -14.531 1.18 1 46.5 ? C1B NAD 403 A 1 
HETATM 13 N N9A NAD . . . D 4 -18.481 -14.524 1.305 1 47.53 ? N9A NAD 403 A 1 
HETATM 14 C C8A NAD . . . D 4 -19.26 -14.716 2.422 1 47.38 ? C8A NAD 403 A 1 
HETATM 15 N N7A NAD . . . D 4 -20.536 -14.887 2.164 1 41.46 ? N7A NAD 403 A 1 
HETATM 16 C C5A NAD . . . D 4 -20.604 -14.797 0.78 1 48.31 ? C5A NAD 403 A 1 
HETATM 17 C C6A NAD . . . D 4 -21.657 -14.997 -0.139 1 41.28 ? C6A NAD 403 A 1 
HETATM 18 N N6A NAD . . . D 4 -22.883 -15.401 0.204 1 47.81 ? N6A NAD 403 A 1 
HETATM 19 N N1A NAD . . . D 4 -21.375 -14.857 -1.45 1 38.9 ? N1A NAD 403 A 1 
HETATM 20 C C2A NAD . . . D 4 -20.129 -14.52 -1.817 1 41.89 ? C2A NAD 403 A 1 
HETATM 21 N N3A NAD . . . D 4 -19.049 -14.329 -1.052 1 39.73 ? N3A NAD 403 A 1 
HETATM 22 C C4A NAD . . . D 4 -19.35 -14.518 0.244 1 45.6 ? C4A NAD 403 A 1 
HETATM 23 O O3 NAD . . . D 4 -13.86 -19.219 3.903 1 39.31 ? O3 NAD 403 A 1 
HETATM 24 P PN NAD . . . D 4 -13.082 -20.577 3.581 1 37.66 ? PN NAD 403 A 1 
HETATM 25 O O1N NAD . . . D 4 -14.052 -21.622 3.194 1 40.52 ? O1N NAD 403 A 1 
HETATM 26 O O2N NAD . . . D 4 -11.864 -20.391 2.736 1 38.11 ? O2N NAD 403 A 1 
HETATM 27 O O5D NAD . . . D 4 -12.546 -21.086 5.012 1 43.91 ? O5D NAD 403 A 1 
HETATM 28 C C5D NAD . . . D 4 -13.372 -21.039 6.204 1 42.9 ? C5D NAD 403 A 1 
HETATM 29 C C4D NAD . . . D 4 -12.799 -21.998 7.216 1 39.51 ? C4D NAD 403 A 1 
HETATM 30 O O4D NAD . . . D 4 -13.701 -22.033 8.337 1 44.53 ? O4D NAD 403 A 1 
HETATM 31 C C3D NAD . . . D 4 -12.709 -23.455 6.781 1 39.12 ? C3D NAD 403 A 1 
HETATM 32 O O3D NAD . . . D 4 -11.773 -24.205 7.569 1 42.25 ? O3D NAD 403 A 1 
HETATM 33 C C2D NAD . . . D 4 -14.127 -23.935 7.065 1 37.82 ? C2D NAD 403 A 1 
HETATM 34 O O2D NAD . . . D 4 -14.295 -25.291 7.436 1 36.52 ? O2D NAD 403 A 1 
HETATM 35 C C1D NAD . . . D 4 -14.492 -23.204 8.347 1 39.7 ? C1D NAD 403 A 1 
HETATM 36 N N1N NAD . . . D 4 -16.008 -22.832 8.288 1 39.21 ? N1N NAD 403 A 1 
HETATM 37 C C2N NAD . . . D 4 -16.934 -23.711 7.718 1 35.65 ? C2N NAD 403 A 1 
HETATM 38 C C3N NAD . . . D 4 -18.266 -23.357 7.678 1 32.51 ? C3N NAD 403 A 1 
HETATM 39 C C7N NAD . . . D 4 -19.169 -24.252 7.005 1 27.88 ? C7N NAD 403 A 1 
HETATM 40 O O7N NAD . . . D 4 -18.91 -25.416 6.973 1 27.28 ? O7N NAD 403 A 1 
HETATM 41 N N7N NAD . . . D 4 -20.271 -23.715 6.433 1 28.2 ? N7N NAD 403 A 1 
HETATM 42 C C4N NAD . . . D 4 -18.671 -22.155 8.249 1 35.52 ? C4N NAD 403 A 1 
HETATM 43 C C5N NAD . . . D 4 -17.748 -21.319 8.844 1 36.72 ? C5N NAD 403 A 1 
HETATM 44 C C6N NAD . . . D 4 -16.406 -21.663 8.832 1 39.48 ? C6N NAD 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#