data_4RMI # _model_server_result.job_id Ho8Au4UNVVoeTA4Etr6P8Q _model_server_result.datetime_utc '2024-11-30 07:32:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4RMI # _exptl.entry_id 4RMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.492 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-benzyl-1,3-thiazol-2-yl)-2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.71 _cell.angle_gamma 90 _cell.entry_id 4RMI _cell.length_a 36.212 _cell.length_b 73.745 _cell.length_c 55.858 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 1 B GLU 87 1_555 B N ALY 2 B ALY 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 B C ALY 2 B ALY 88 1_555 B N ARG 3 B ARG 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A SG CYS 143 A CYS 195 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A SG CYS 148 A CYS 200 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A SG CYS 169 A CYS 221 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc4 A SG CYS 172 A CYS 224 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C18 H18 N4 O S2' _chem_comp.formula_weight 370.492 _chem_comp.id 3TK _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-benzyl-1,3-thiazol-2-yl)-2-[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C 3TK sing 1 n n C O 3TK doub 2 n n C C11 3TK sing 3 n n C1 N 3TK sing 4 n n N HN 3TK sing 5 n n C3 S 3TK sing 6 n y C1 S 3TK sing 7 n y N1 C1 3TK doub 8 n y C2 N1 3TK sing 9 n y C12 S1 3TK sing 10 n n C11 S1 3TK sing 11 n n C2 C3 3TK doub 12 n y C2 H2 3TK sing 13 n n C13 N2 3TK doub 14 n y N2 C12 3TK sing 15 n y C4 C3 3TK sing 16 n n C16 N3 3TK sing 17 n y C12 N3 3TK doub 18 n y C5 C4 3TK sing 19 n n C4 H4 3TK sing 20 n n C4 H4A 3TK sing 21 n n C6 C5 3TK doub 22 n y C5 C10 3TK sing 23 n y C7 C6 3TK sing 24 n y C6 H6 3TK sing 25 n n C7 C8 3TK doub 26 n y C7 H7 3TK sing 27 n n C8 C9 3TK sing 28 n y C8 H8 3TK sing 29 n n C9 C10 3TK doub 30 n y C9 H9 3TK sing 31 n n C10 H10 3TK sing 32 n n C11 H11 3TK sing 33 n n C11 H11A 3TK sing 34 n n C14 C13 3TK sing 35 n n C13 C15 3TK sing 36 n y C14 H14 3TK sing 37 n n C14 H14A 3TK sing 38 n n C14 H14B 3TK sing 39 n n C15 C16 3TK doub 40 n y C15 H15 3TK sing 41 n n C16 C17 3TK sing 42 n n C17 H17 3TK sing 43 n n C17 H17A 3TK sing 44 n n C17 H17B 3TK sing 45 n n # _atom_sites.entry_id 4RMI _atom_sites.fract_transf_matrix[1][1] 0.027615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002277 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 4 3TK A 1 402 402 3TK 3TK . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 508 HOH HOH . E 5 HOH A 9 509 509 HOH HOH . E 5 HOH A 10 510 510 HOH HOH . E 5 HOH A 11 511 511 HOH HOH . E 5 HOH A 12 512 512 HOH HOH . E 5 HOH A 13 513 513 HOH HOH . E 5 HOH A 14 514 514 HOH HOH . E 5 HOH A 15 515 515 HOH HOH . E 5 HOH A 16 516 516 HOH HOH . E 5 HOH A 17 517 517 HOH HOH . E 5 HOH A 18 518 518 HOH HOH . E 5 HOH A 19 519 519 HOH HOH . E 5 HOH A 20 520 520 HOH HOH . E 5 HOH A 21 521 521 HOH HOH . E 5 HOH A 22 522 522 HOH HOH . E 5 HOH A 23 523 523 HOH HOH . E 5 HOH A 24 524 524 HOH HOH . E 5 HOH A 25 525 525 HOH HOH . E 5 HOH A 26 526 526 HOH HOH . E 5 HOH A 27 527 527 HOH HOH . E 5 HOH A 28 528 528 HOH HOH . E 5 HOH A 29 529 529 HOH HOH . E 5 HOH A 30 530 530 HOH HOH . E 5 HOH A 31 531 531 HOH HOH . E 5 HOH A 32 532 532 HOH HOH . E 5 HOH A 33 533 533 HOH HOH . E 5 HOH A 34 534 534 HOH HOH . E 5 HOH A 35 535 535 HOH HOH . E 5 HOH A 36 536 536 HOH HOH . E 5 HOH A 37 537 537 HOH HOH . E 5 HOH A 38 538 538 HOH HOH . E 5 HOH A 39 539 539 HOH HOH . E 5 HOH A 40 540 540 HOH HOH . E 5 HOH A 41 541 541 HOH HOH . E 5 HOH A 42 542 542 HOH HOH . E 5 HOH A 43 543 543 HOH HOH . E 5 HOH A 44 544 544 HOH HOH . E 5 HOH A 45 545 545 HOH HOH . E 5 HOH A 46 546 546 HOH HOH . E 5 HOH A 47 547 547 HOH HOH . E 5 HOH A 48 548 548 HOH HOH . E 5 HOH A 49 549 549 HOH HOH . E 5 HOH A 50 550 550 HOH HOH . E 5 HOH A 51 551 551 HOH HOH . E 5 HOH A 52 552 552 HOH HOH . E 5 HOH A 53 553 553 HOH HOH . E 5 HOH A 54 554 554 HOH HOH . E 5 HOH A 55 555 555 HOH HOH . E 5 HOH A 56 556 556 HOH HOH . E 5 HOH A 57 557 557 HOH HOH . E 5 HOH A 58 558 558 HOH HOH . E 5 HOH A 59 559 559 HOH HOH . E 5 HOH A 60 560 560 HOH HOH . E 5 HOH A 61 561 561 HOH HOH . E 5 HOH A 62 562 562 HOH HOH . E 5 HOH A 63 563 563 HOH HOH . E 5 HOH A 64 564 564 HOH HOH . E 5 HOH A 65 565 565 HOH HOH . E 5 HOH A 66 566 566 HOH HOH . E 5 HOH A 67 567 567 HOH HOH . E 5 HOH A 68 568 568 HOH HOH . E 5 HOH A 69 569 569 HOH HOH . E 5 HOH A 70 570 570 HOH HOH . E 5 HOH A 71 571 571 HOH HOH . E 5 HOH A 72 572 572 HOH HOH . E 5 HOH A 73 573 573 HOH HOH . E 5 HOH A 74 574 574 HOH HOH . E 5 HOH A 75 575 575 HOH HOH . E 5 HOH A 76 576 576 HOH HOH . E 5 HOH A 77 577 577 HOH HOH . E 5 HOH A 78 578 578 HOH HOH . E 5 HOH A 79 579 579 HOH HOH . E 5 HOH A 80 580 580 HOH HOH . E 5 HOH A 81 581 581 HOH HOH . E 5 HOH A 82 582 582 HOH HOH . E 5 HOH A 83 583 583 HOH HOH . E 5 HOH A 84 584 584 HOH HOH . E 5 HOH A 85 585 585 HOH HOH . E 5 HOH A 86 586 586 HOH HOH . E 5 HOH A 87 587 587 HOH HOH . E 5 HOH A 88 588 588 HOH HOH . E 5 HOH A 89 589 589 HOH HOH . E 5 HOH A 90 590 590 HOH HOH . E 5 HOH A 91 591 591 HOH HOH . E 5 HOH A 92 592 592 HOH HOH . E 5 HOH A 93 593 593 HOH HOH . E 5 HOH A 94 594 594 HOH HOH . E 5 HOH A 95 595 595 HOH HOH . E 5 HOH A 96 596 596 HOH HOH . E 5 HOH A 97 597 597 HOH HOH . E 5 HOH A 98 598 598 HOH HOH . E 5 HOH A 99 599 599 HOH HOH . E 5 HOH A 100 600 600 HOH HOH . E 5 HOH A 101 601 601 HOH HOH . E 5 HOH A 102 602 602 HOH HOH . E 5 HOH A 103 603 603 HOH HOH . E 5 HOH A 104 604 604 HOH HOH . E 5 HOH A 105 605 605 HOH HOH . E 5 HOH A 106 606 606 HOH HOH . E 5 HOH A 107 607 607 HOH HOH . E 5 HOH A 108 608 608 HOH HOH . E 5 HOH A 109 609 609 HOH HOH . E 5 HOH A 110 610 610 HOH HOH . E 5 HOH A 111 611 611 HOH HOH . E 5 HOH A 112 612 612 HOH HOH . E 5 HOH A 113 613 613 HOH HOH . E 5 HOH A 114 614 614 HOH HOH . E 5 HOH A 115 615 615 HOH HOH . E 5 HOH A 116 616 616 HOH HOH . E 5 HOH A 117 617 617 HOH HOH . E 5 HOH A 118 618 618 HOH HOH . E 5 HOH A 119 619 619 HOH HOH . E 5 HOH A 120 620 620 HOH HOH . E 5 HOH A 121 621 621 HOH HOH . E 5 HOH A 122 622 622 HOH HOH . E 5 HOH A 123 623 623 HOH HOH . E 5 HOH A 124 624 624 HOH HOH . E 5 HOH A 125 625 625 HOH HOH . E 5 HOH A 126 626 626 HOH HOH . E 5 HOH A 127 627 627 HOH HOH . E 5 HOH A 128 628 628 HOH HOH . E 5 HOH A 129 629 629 HOH HOH . E 5 HOH A 130 630 630 HOH HOH . E 5 HOH A 131 631 631 HOH HOH . E 5 HOH A 132 632 632 HOH HOH . E 5 HOH A 133 633 633 HOH HOH . E 5 HOH A 134 634 634 HOH HOH . E 5 HOH A 135 635 635 HOH HOH . E 5 HOH A 136 636 636 HOH HOH . E 5 HOH A 137 637 637 HOH HOH . E 5 HOH A 138 638 638 HOH HOH . E 5 HOH A 139 639 639 HOH HOH . E 5 HOH A 140 640 640 HOH HOH . E 5 HOH A 141 641 641 HOH HOH . E 5 HOH A 142 642 642 HOH HOH . E 5 HOH A 143 643 643 HOH HOH . E 5 HOH A 144 644 644 HOH HOH . E 5 HOH A 145 645 645 HOH HOH . E 5 HOH A 146 646 646 HOH HOH . E 5 HOH A 147 647 647 HOH HOH . E 5 HOH A 148 648 648 HOH HOH . E 5 HOH A 149 649 649 HOH HOH . E 5 HOH A 150 650 650 HOH HOH . E 5 HOH A 151 651 651 HOH HOH . E 5 HOH A 152 652 652 HOH HOH . E 5 HOH A 153 653 653 HOH HOH . E 5 HOH A 154 654 654 HOH HOH . E 5 HOH A 155 655 655 HOH HOH . E 5 HOH A 156 656 656 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 3TK . . . D 4 -18.784 4.408 11.446 1 26.82 ? C 3TK 402 A 1 HETATM 2 N N 3TK . . . D 4 -18.708 4.861 10.157 1 27.34 ? N 3TK 402 A 1 HETATM 3 O O 3TK . . . D 4 -19.132 3.264 11.746 1 27.8 ? O 3TK 402 A 1 HETATM 4 S S 3TK . . . D 4 -19.047 2.327 9.111 1 30.9 ? S 3TK 402 A 1 HETATM 5 C C1 3TK . . . D 4 -18.763 4.04 9.049 1 28.74 ? C1 3TK 402 A 1 HETATM 6 N N1 3TK . . . D 4 -18.663 4.545 7.855 1 30.78 ? N1 3TK 402 A 1 HETATM 7 S S1 3TK . . . D 4 -16.892 6.209 13.098 1 24.67 ? S1 3TK 402 A 1 HETATM 8 C C2 3TK . . . D 4 -18.833 3.547 6.919 1 30.88 ? C2 3TK 402 A 1 HETATM 9 N N2 3TK . . . D 4 -17.311 7.268 10.672 1 18.66 ? N2 3TK 402 A 1 HETATM 10 C C3 3TK . . . D 4 -19.045 2.296 7.382 1 30.76 ? C3 3TK 402 A 1 HETATM 11 N N3 3TK . . . D 4 -15.421 8.013 11.975 1 20.1 ? N3 3TK 402 A 1 HETATM 12 C C4 3TK . . . D 4 -19.25 1.072 6.621 1 32.27 ? C4 3TK 402 A 1 HETATM 13 C C5 3TK . . . D 4 -18.082 0.115 6.559 1 33.53 ? C5 3TK 402 A 1 HETATM 14 C C6 3TK . . . D 4 -17.349 -0.036 5.39 1 35.18 ? C6 3TK 402 A 1 HETATM 15 C C7 3TK . . . D 4 -16.25 -0.88 5.346 1 36.15 ? C7 3TK 402 A 1 HETATM 16 C C8 3TK . . . D 4 -15.883 -1.597 6.461 1 35.22 ? C8 3TK 402 A 1 HETATM 17 C C9 3TK . . . D 4 -16.614 -1.473 7.624 1 35.54 ? C9 3TK 402 A 1 HETATM 18 C C10 3TK . . . D 4 -17.705 -0.619 7.673 1 34.28 ? C10 3TK 402 A 1 HETATM 19 C C11 3TK . . . D 4 -18.399 5.424 12.502 1 25.43 ? C11 3TK 402 A 1 HETATM 20 C C12 3TK . . . D 4 -16.503 7.253 11.749 1 20.18 ? C12 3TK 402 A 1 HETATM 21 C C13 3TK . . . D 4 -16.994 8.161 9.725 1 17.06 ? C13 3TK 402 A 1 HETATM 22 C C14 3TK . . . D 4 -17.882 8.201 8.517 1 16.89 ? C14 3TK 402 A 1 HETATM 23 C C15 3TK . . . D 4 -15.9 9.005 9.868 1 17.49 ? C15 3TK 402 A 1 HETATM 24 C C16 3TK . . . D 4 -15.132 8.905 11.019 1 19.26 ? C16 3TK 402 A 1 HETATM 25 C C17 3TK . . . D 4 -13.922 9.756 11.247 1 19.34 ? C17 3TK 402 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #