data_4RN6
#
_model_server_result.job_id            xwgAiNZVWHQevJu4FX2WGg 
_model_server_result.datetime_utc      '2024-12-04 09:01:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    4RN6 
#
_exptl.entry_id    4RN6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              508.634 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.62 
_cell.angle_gamma         90 
_cell.entry_id            4RN6 
_cell.length_a            43.919 
_cell.length_b            81.84 
_cell.length_c            77.761 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 1 1_555 A SG CYS 150 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 59 A CYS 42 1_555 A SG CYS 75 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 204 A CYS 168 1_555 A SG CYS 218 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 232 A CYS 191 1_555 A SG CYS 262 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 B SG CYS 4 B CYS 1 1_555 B SG CYS 150 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 B SG CYS 59 B CYS 42 1_555 B SG CYS 75 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 B SG CYS 204 B CYS 168 1_555 B SG CYS 218 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf8 B SG CYS 232 B CYS 191 1_555 B SG CYS 262 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C23 H36 N6 O5 S' 
_chem_comp.formula_weight    508.634 
_chem_comp.id                15U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     S-argatroban 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C2 15U sing 1 n n 
C2 C3 15U sing 2 n n 
C2 C1 15U sing 3 n n 
C3 C4 15U sing 4 n n 
C1 N 15U sing 5 n n 
C4 C5 15U doub 6 n y 
C4 C9 15U sing 7 n y 
C41 C51 15U sing 8 n n 
C41 C31 15U sing 9 n n 
C5 C6 15U sing 10 n y 
C71 C31 15U sing 11 n n 
C51 N2 15U sing 12 n n 
N C9 15U sing 13 n n 
C9 C8 15U doub 14 n y 
C31 C21 15U sing 15 n n 
O C 15U doub 16 n n 
C6 C7 15U doub 17 n y 
N2 C 15U sing 18 n n 
N2 C11 15U sing 19 n n 
C CA 15U sing 20 n n 
C8 C7 15U sing 21 n y 
C8 S 15U sing 22 n n 
C21 C11 15U sing 23 n n 
C11 C61 15U sing 24 n n 
NH2 CZ 15U doub 25 n n 
O11 C61 15U doub 26 n n 
N1 CA 15U sing 27 n n 
N1 S 15U sing 28 n n 
C61 O21 15U sing 29 n n 
CA CB 15U sing 30 n n 
S O1 15U doub 31 n n 
S O2 15U doub 32 n n 
CG CB 15U sing 33 n n 
CG CD 15U sing 34 n n 
CZ NH1 15U sing 35 n n 
CZ NE 15U sing 36 n n 
CD NE 15U sing 37 n n 
C1 H1 15U sing 38 n n 
C1 H2 15U sing 39 n n 
C2 H3 15U sing 40 n n 
C3 H4 15U sing 41 n n 
C3 H5 15U sing 42 n n 
C5 H6 15U sing 43 n n 
C6 H7 15U sing 44 n n 
C7 H8 15U sing 45 n n 
C10 H9 15U sing 46 n n 
C10 H10 15U sing 47 n n 
C10 H11 15U sing 48 n n 
N H12 15U sing 49 n n 
N1 H13 15U sing 50 n n 
CA H14 15U sing 51 n n 
CB H15 15U sing 52 n n 
CB H16 15U sing 53 n n 
CG H17 15U sing 54 n n 
CG H18 15U sing 55 n n 
CD H19 15U sing 56 n n 
CD H20 15U sing 57 n n 
NE H21 15U sing 58 n n 
NH1 H22 15U sing 59 n n 
NH1 H23 15U sing 60 n n 
NH2 H24 15U sing 61 n n 
C11 H26 15U sing 62 n n 
C21 H27 15U sing 63 n n 
C21 H28 15U sing 64 n n 
C31 H29 15U sing 65 n n 
C41 H30 15U sing 66 n n 
C41 H31 15U sing 67 n n 
C51 H32 15U sing 68 n n 
C51 H33 15U sing 69 n n 
O21 H34 15U sing 70 n n 
C71 H35 15U sing 71 n n 
C71 H36 15U sing 72 n n 
C71 H37 15U sing 73 n n 
#
_atom_sites.entry_id                     4RN6 
_atom_sites.fract_transf_matrix[1][1]    0.022769 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004269 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 15U A 1 301 301 15U 15U . 
D 2 15U B 1 301 301 15U 15U . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S 15U . . . D 2 11.288 -13.697 43.956 1 31 ? S 15U 301 B 1 
HETATM 2 O O1 15U . . . D 2 10.284 -12.68 44.106 1 31.15 ? O1 15U 301 B 1 
HETATM 3 O O2 15U . . . D 2 10.702 -14.84 43.307 1 30.68 ? O2 15U 301 B 1 
HETATM 4 C C1 15U . . . D 2 12.352 -10.734 47.105 1 28.48 ? C1 15U 301 B 1 
HETATM 5 C C2 15U . . . D 2 13.521 -11.115 48.018 1 28.32 ? C2 15U 301 B 1 
HETATM 6 C C3 15U . . . D 2 13.25 -12.455 48.699 1 28.44 ? C3 15U 301 B 1 
HETATM 7 C C4 15U . . . D 2 12.837 -13.48 47.669 1 28.59 ? C4 15U 301 B 1 
HETATM 8 C C5 15U . . . D 2 12.973 -14.837 47.933 1 28.74 ? C5 15U 301 B 1 
HETATM 9 C C6 15U . . . D 2 12.588 -15.791 46.99 1 28.86 ? C6 15U 301 B 1 
HETATM 10 C C7 15U . . . D 2 12.06 -15.436 45.748 1 29.32 ? C7 15U 301 B 1 
HETATM 11 C C8 15U . . . D 2 11.88 -14.1 45.39 1 29.76 ? C8 15U 301 B 1 
HETATM 12 C C9 15U . . . D 2 12.272 -13.049 46.364 1 28.82 ? C9 15U 301 B 1 
HETATM 13 C C10 15U . . . D 2 13.776 -10.032 49.055 1 28.17 ? C10 15U 301 B 1 
HETATM 14 N N 15U . . . D 2 12.132 -11.736 46.075 1 28.3 ? N 15U 301 B 1 
HETATM 15 N N1 15U . . . D 2 12.479 -13.118 43.043 1 30.55 ? N1 15U 301 B 1 
HETATM 16 C CA 15U . . . D 2 13.764 -13.795 42.909 1 30.08 ? CA 15U 301 B 1 
HETATM 17 C C 15U . . . D 2 14.742 -13.438 44.007 1 29.97 ? C 15U 301 B 1 
HETATM 18 O O 15U . . . D 2 14.597 -12.394 44.624 1 29.81 ? O 15U 301 B 1 
HETATM 19 C CB 15U . . . D 2 14.336 -13.486 41.527 1 30.19 ? CB 15U 301 B 1 
HETATM 20 C CG 15U . . . D 2 15.153 -12.196 41.478 1 29.73 ? CG 15U 301 B 1 
HETATM 21 C CD 15U . . . D 2 16.067 -12.191 40.261 1 29.22 ? CD 15U 301 B 1 
HETATM 22 N NE 15U . . . D 2 16.126 -10.887 39.632 1 28.6 ? NE 15U 301 B 1 
HETATM 23 C CZ 15U . . . D 2 16.872 -9.892 40.108 1 28.31 ? CZ 15U 301 B 1 
HETATM 24 N NH1 15U . . . D 2 16.582 -8.641 39.76 1 28.6 ? NH1 15U 301 B 1 
HETATM 25 N NH2 15U . . . D 2 17.843 -10.124 40.877 1 27.54 ? NH2 15U 301 B 1 
HETATM 26 N N2 15U . . . D 2 15.759 -14.261 44.291 1 30.05 ? N2 15U 301 B 1 
HETATM 27 C C11 15U . . . D 2 15.681 -15.725 44.106 1 30.38 ? C11 15U 301 B 1 
HETATM 28 C C21 15U . . . D 2 15.814 -16.381 45.489 1 29.78 ? C21 15U 301 B 1 
HETATM 29 C C31 15U . . . D 2 17.014 -15.876 46.29 1 29.84 ? C31 15U 301 B 1 
HETATM 30 C C41 15U . . . D 2 17.058 -14.348 46.274 1 30.37 ? C41 15U 301 B 1 
HETATM 31 C C51 15U . . . D 2 17.033 -13.805 44.846 1 30.1 ? C51 15U 301 B 1 
HETATM 32 C C61 15U . . . D 2 16.682 -16.329 43.139 1 31.29 ? C61 15U 301 B 1 
HETATM 33 O O11 15U . . . D 2 17.787 -15.774 42.942 1 31.32 ? O11 15U 301 B 1 
HETATM 34 O O21 15U . . . D 2 16.375 -17.395 42.554 1 31.99 ? O21 15U 301 B 1 
HETATM 35 C C71 15U . . . D 2 16.978 -16.395 47.721 1 29.42 ? C71 15U 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#