data_4RNG
#
_model_server_result.job_id            aapVhMh-6c72RzyAZGSCAg 
_model_server_result.datetime_utc      '2025-07-03 09:23:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rng 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":101}' 
#
_entry.id    4RNG 
#
_exptl.entry_id    4RNG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RNG 
_cell.length_a            52.88 
_cell.length_b            96.155 
_cell.length_c            119.797 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RNG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA hexameric 6 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G,H,I,K 1 1 
B,D,J,L,M 2 1 
E,F,N,O,P,Q 3 1 
A,C,G,H,I,K 4 2 
B,D,E,F,J,L,M,N,O,P,Q 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_445 -x-1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -52.88 -48.0775 59.8985 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 N N N 
? 2 O N N 
? 2 Q N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 222 n n 
C10 C9 OLC doub 223 n n 
C10 C11 OLC sing 224 n n 
C9 C8 OLC sing 225 n n 
C17 C16 OLC sing 226 z n 
C11 C12 OLC sing 227 n n 
C8 C7 OLC sing 228 n n 
C24 C22 OLC sing 229 n n 
C24 O25 OLC sing 230 n n 
C16 C15 OLC sing 231 n n 
C12 C13 OLC sing 232 n n 
C7 C6 OLC sing 233 n n 
C15 C14 OLC sing 234 n n 
C13 C14 OLC sing 235 n n 
C6 C5 OLC sing 236 n n 
C5 C4 OLC sing 237 n n 
C4 C3 OLC sing 238 n n 
C3 C2 OLC sing 239 n n 
C2 C1 OLC sing 240 n n 
C21 C22 OLC sing 241 n n 
C21 O20 OLC sing 242 n n 
C1 O19 OLC doub 243 n n 
C1 O20 OLC sing 244 n n 
C22 O23 OLC sing 245 n n 
C18 H18 OLC sing 246 n n 
C18 H18A OLC sing 247 n n 
C18 H18B OLC sing 248 n n 
C10 H10 OLC sing 249 n n 
C9 H9 OLC sing 250 n n 
C17 H17 OLC sing 251 n n 
C17 H17A OLC sing 252 n n 
C11 H11 OLC sing 253 n n 
C11 H11A OLC sing 254 n n 
C8 H8 OLC sing 255 n n 
C8 H8A OLC sing 256 n n 
C24 H24 OLC sing 257 n n 
C24 H24A OLC sing 258 n n 
C16 H16 OLC sing 259 n n 
C16 H16A OLC sing 260 n n 
C12 H12 OLC sing 261 n n 
C12 H12A OLC sing 262 n n 
C7 H7 OLC sing 263 n n 
C7 H7A OLC sing 264 n n 
C15 H15 OLC sing 265 n n 
C15 H15A OLC sing 266 n n 
C13 H13 OLC sing 267 n n 
C13 H13A OLC sing 268 n n 
C6 H6 OLC sing 269 n n 
C6 H6A OLC sing 270 n n 
C14 H14 OLC sing 271 n n 
C14 H14A OLC sing 272 n n 
C5 H5 OLC sing 273 n n 
C5 H5A OLC sing 274 n n 
C4 H4 OLC sing 275 n n 
C4 H4A OLC sing 276 n n 
C3 H3 OLC sing 277 n n 
C3 H3A OLC sing 278 n n 
C2 H2 OLC sing 279 n n 
C2 H2A OLC sing 280 n n 
C21 H21 OLC sing 281 n n 
C21 H21A OLC sing 282 n n 
C22 H22 OLC sing 283 n n 
O25 HO25 OLC sing 284 n n 
O23 HO23 OLC sing 285 n n 
#
_atom_sites.entry_id                     4RNG 
_atom_sites.fract_transf_matrix[1][1]    0.018911 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 OLC A 1 101 3 OLC OLC . 
H 3 SO4 A 1 102 1 SO4 SO4 . 
I 3 SO4 A 1 103 6 SO4 SO4 . 
J 3 SO4 B 1 101 4 SO4 SO4 . 
K 3 SO4 C 1 101 5 SO4 SO4 . 
L 3 SO4 D 1 101 3 SO4 SO4 . 
M 3 SO4 D 1 102 7 SO4 SO4 . 
N 2 OLC E 1 101 1 OLC OLC . 
O 2 OLC E 1 102 2 OLC OLC . 
P 3 SO4 E 1 103 2 SO4 SO4 . 
Q 2 OLC F 1 101 4 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . N 2 -8.749 -99.793 27.813 1 25.64 ? C18 OLC 101 E 1 
HETATM 2 C C10 OLC . . . N 2 -9.924 -98.308 19.376 1 26.34 ? C10 OLC 101 E 1 
HETATM 3 C C9 OLC . . . N 2 -10.664 -98.93 18.472 1 24.61 ? C9 OLC 101 E 1 
HETATM 4 C C17 OLC . . . N 2 -9.932 -98.99 27.305 1 27.29 ? C17 OLC 101 E 1 
HETATM 5 C C11 OLC . . . N 2 -10.485 -97.908 20.72 1 22.53 ? C11 OLC 101 E 1 
HETATM 6 C C8 OLC . . . N 2 -12.087 -99.153 18.846 1 31.53 ? C8 OLC 101 E 1 
HETATM 7 C C24 OLC . . . N 2 -18.897 -102.686 11.265 1 60.58 ? C24 OLC 101 E 1 
HETATM 8 C C16 OLC . . . N 2 -9.488 -97.769 26.508 1 20.14 ? C16 OLC 101 E 1 
HETATM 9 C C12 OLC . . . N 2 -9.808 -98.792 21.762 1 18.76 ? C12 OLC 101 E 1 
HETATM 10 C C7 OLC . . . N 2 -12.647 -100.467 18.388 1 37.26 ? C7 OLC 101 E 1 
HETATM 11 C C15 OLC . . . N 2 -8.564 -98.158 25.359 1 27.45 ? C15 OLC 101 E 1 
HETATM 12 C C13 OLC . . . N 2 -9.264 -98.005 22.943 1 22.43 ? C13 OLC 101 E 1 
HETATM 13 C C6 OLC . . . N 2 -13.797 -100.676 19.345 1 41.8 ? C6 OLC 101 E 1 
HETATM 14 C C14 OLC . . . N 2 -9.322 -98.84 24.226 1 28.99 ? C14 OLC 101 E 1 
HETATM 15 C C5 OLC . . . N 2 -14.647 -101.789 18.8 1 50.01 ? C5 OLC 101 E 1 
HETATM 16 C C4 OLC . . . N 2 -15.601 -101.255 17.762 1 53.52 ? C4 OLC 101 E 1 
HETATM 17 C C3 OLC . . . N 2 -16.965 -101.825 18.111 1 54.2 ? C3 OLC 101 E 1 
HETATM 18 C C2 OLC . . . N 2 -18.003 -101.425 17.076 1 58.14 ? C2 OLC 101 E 1 
HETATM 19 C C21 OLC . . . N 2 -18.072 -102.815 13.547 1 52.16 ? C21 OLC 101 E 1 
HETATM 20 C C1 OLC . . . N 2 -17.833 -102.364 15.915 1 58.25 ? C1 OLC 101 E 1 
HETATM 21 C C22 OLC . . . N 2 -19.14 -103.341 12.611 1 55.17 ? C22 OLC 101 E 1 
HETATM 22 O O19 OLC . . . N 2 -16.998 -103.247 15.964 1 68.8 ? O19 OLC 101 E 1 
HETATM 23 O O25 OLC . . . N 2 -17.728 -103.28 10.686 1 65.94 ? O25 OLC 101 E 1 
HETATM 24 O O23 OLC . . . N 2 -18.965 -104.759 12.468 1 53.92 ? O23 OLC 101 E 1 
HETATM 25 O O20 OLC . . . N 2 -18.648 -102.266 14.724 1 48.87 ? O20 OLC 101 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#